Wall clock time and date at job start Tue Mar 31 2020 18:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00187 * 2 1 4 4 C 1.46898 * 111.00247 * 123.95596 * 2 1 3 5 5 C 1.50693 * 109.47243 * 173.15445 * 4 2 1 6 6 C 1.40366 * 126.64995 * 104.77694 * 5 4 2 7 7 C 1.35124 * 107.11876 * 180.29894 * 6 5 4 8 8 O 1.33923 * 108.76807 * 359.74467 * 7 6 5 9 9 C 1.34914 * 109.38517 * 359.97438 * 8 7 6 10 10 C 1.46655 * 125.99110 * 180.02562 * 9 8 7 11 11 O 1.21697 * 120.00166 * 187.32542 * 10 9 8 12 12 N 1.34776 * 119.99926 * 7.32830 * 10 9 8 13 13 C 1.46928 * 120.63062 * 356.58863 * 12 10 9 14 14 C 1.53194 * 108.77116 * 126.39578 * 13 12 10 15 15 C 1.53038 * 109.31687 * 54.63824 * 14 13 12 16 16 C 1.53043 * 109.53649 * 298.63506 * 15 14 13 17 17 H 1.08998 * 109.49769 * 301.37746 * 16 15 14 18 18 N 1.46495 * 109.49798 * 181.31546 * 16 15 14 19 19 C 1.46502 * 119.99758 * 300.27623 * 18 16 15 20 20 C 1.36940 * 120.00362 * 119.99654 * 18 16 15 21 21 H 1.07997 * 119.99518 * 327.39499 * 20 18 16 22 22 C 1.38807 * 119.99847 * 147.38883 * 20 18 16 23 23 N 1.31613 * 120.00602 * 3.61065 * 22 20 18 24 24 Si 1.86800 * 119.99765 * 183.60912 * 22 20 18 25 25 H 1.48500 * 109.47454 * 60.00123 * 24 22 20 26 26 H 1.48501 * 109.47540 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47195 * 300.00258 * 24 22 20 28 28 C 1.46927 * 120.63446 * 176.59526 * 12 10 9 29 29 H 1.08997 * 109.46971 * 296.04496 * 1 2 3 30 30 H 1.08999 * 109.47056 * 56.04785 * 1 2 3 31 31 H 1.08995 * 109.46920 * 176.04946 * 1 2 3 32 32 H 1.08996 * 109.46992 * 189.14124 * 3 2 1 33 33 H 1.08999 * 109.46742 * 309.13492 * 3 2 1 34 34 H 1.08997 * 109.47207 * 69.13472 * 3 2 1 35 35 H 1.09004 * 109.47278 * 53.15253 * 4 2 1 36 36 H 1.08997 * 109.46920 * 293.15306 * 4 2 1 37 37 H 1.08010 * 126.44000 * 0.04365 * 6 5 4 38 38 H 1.08001 * 125.61653 * 179.70668 * 7 6 5 39 39 H 1.08997 * 109.58724 * 6.61127 * 13 12 10 40 40 H 1.08995 * 109.58964 * 246.17912 * 13 12 10 41 41 H 1.08997 * 109.49965 * 294.67967 * 14 13 12 42 42 H 1.09004 * 109.49599 * 174.59100 * 14 13 12 43 43 H 1.08996 * 109.46218 * 178.61567 * 15 14 13 44 44 H 1.09005 * 109.45778 * 58.65325 * 15 14 13 45 45 H 1.08998 * 109.47050 * 274.18184 * 19 18 16 46 46 H 1.08998 * 109.47232 * 34.18811 * 19 18 16 47 47 H 1.09008 * 109.47143 * 154.18923 * 19 18 16 48 48 H 0.96999 * 120.00193 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.58801 * 113.81694 * 28 12 10 50 50 H 1.09003 * 109.58252 * 353.39218 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4925 -0.8860 1.0126 6 6 4.4543 -0.1808 1.7527 7 6 5.6674 -0.5870 1.3177 8 8 5.4957 -1.5047 0.3575 9 6 4.1762 -1.7042 0.1595 10 6 3.5804 -2.6322 -0.8072 11 8 2.3772 -2.6307 -0.9903 12 7 4.3653 -3.4868 -1.4928 13 6 5.8259 -3.4500 -1.3381 14 6 6.3186 -4.8540 -0.9736 15 6 5.8226 -5.8525 -2.0219 16 6 4.2922 -5.8653 -2.0328 17 1 3.9236 -6.1350 -1.0432 18 7 3.8184 -6.8441 -3.0145 19 6 4.1858 -6.7030 -4.4256 20 6 3.0368 -7.8941 -2.6122 21 1 3.1765 -8.3270 -1.6326 22 6 2.0651 -8.4020 -3.4633 23 7 1.9420 -7.9220 -4.6826 24 14 0.9318 -9.7668 -2.8782 25 1 0.1645 -9.3002 -1.6955 26 1 -0.0096 -10.1299 -3.9677 27 1 1.7399 -10.9559 -2.5062 28 6 3.7767 -4.4728 -2.4093 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0729 1.3470 -0.1633 33 1 1.5202 1.9430 -0.7971 34 1 1.7840 1.8418 0.9602 35 1 1.5504 -1.7610 1.1428 36 1 1.7485 -0.2526 2.0667 37 1 4.2610 0.5522 2.5222 38 1 6.6187 -0.2299 1.6836 39 1 6.0918 -2.7519 -0.5443 40 1 6.2848 -3.1335 -2.2748 41 1 5.9310 -5.1326 0.0063 42 1 7.4083 -4.8624 -0.9500 43 1 6.1923 -6.8485 -1.7783 44 1 6.1903 -5.5593 -3.0053 45 1 3.4778 -6.0385 -4.9207 46 1 5.1896 -6.2847 -4.4997 47 1 4.1634 -7.6810 -4.9065 48 1 1.2632 -8.2772 -5.2775 49 1 4.0684 -4.2397 -3.4334 50 1 2.6903 -4.4496 -2.3224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027546438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:54 Heat of formation + Delta-G solvation = 11.779893 kcal Electronic energy + Delta-G solvation = -30599.491040 eV Core-core repulsion = 26629.381215 eV Total energy + Delta-G solvation = -3970.109825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.75126 -40.90527 -38.96376 -38.32009 -36.75131 -34.37600 -33.88429 -32.84513 -31.50930 -30.20219 -28.46132 -28.39317 -28.02520 -26.39648 -25.34795 -23.73285 -23.14745 -22.83615 -22.23749 -20.64273 -20.07727 -18.90951 -18.34226 -17.59532 -17.42877 -16.97627 -16.73756 -16.19761 -16.15263 -15.86119 -15.75344 -15.52626 -15.30119 -15.09907 -14.82112 -14.41736 -14.16699 -14.10064 -13.91927 -13.64990 -13.46859 -13.38689 -13.12199 -12.89594 -12.76683 -12.71936 -12.60471 -12.50343 -12.46872 -12.23659 -12.15352 -12.08041 -11.73848 -11.52229 -11.37818 -11.05437 -10.77229 -10.60503 -9.81421 -9.45412 -9.18528 -8.62888 -7.89645 -5.43092 0.10432 1.42954 1.45663 1.46909 1.52621 1.61610 2.08785 2.23745 2.48287 3.17383 3.27997 3.53834 3.65123 3.71386 3.91700 4.00804 4.06426 4.16845 4.25499 4.26076 4.35175 4.36979 4.46213 4.50138 4.53954 4.65503 4.67399 4.71766 4.73054 4.79794 4.85154 4.97538 4.97952 5.00101 5.03567 5.06661 5.12780 5.17444 5.27777 5.40604 5.41857 5.54063 5.58537 5.64452 5.71019 5.94894 6.09811 6.17929 6.37161 6.44487 7.10237 7.16020 7.83340 8.31475 9.15022 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.003437 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.664435 B = 8144.760093 C = 9500.778914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.557 5.557 3 C 0.031 3.969 4 C 0.126 3.874 5 C -0.092 4.092 6 C -0.226 4.226 7 C 0.006 3.994 8 O -0.160 6.160 9 C -0.081 4.081 10 C 0.583 3.417 11 O -0.543 6.543 12 N -0.602 5.602 13 C 0.090 3.910 14 C -0.118 4.118 15 C -0.123 4.123 16 C 0.169 3.831 17 H 0.044 0.956 18 N -0.608 5.608 19 C 0.179 3.821 20 C -0.275 4.275 21 H 0.064 0.936 22 C -0.039 4.039 23 N -0.931 5.931 24 Si 0.966 3.034 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.271 1.271 28 C 0.120 3.880 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.179 0.821 38 H 0.258 0.742 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.059 0.941 44 H 0.063 0.937 45 H -0.011 1.011 46 H 0.027 0.973 47 H 0.031 0.969 48 H 0.250 0.750 49 H 0.057 0.943 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 20.198 14.626 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.281 5.281 3 C -0.116 4.116 4 C -0.001 4.001 5 C -0.096 4.096 6 C -0.245 4.245 7 C -0.062 4.062 8 O -0.056 6.056 9 C -0.133 4.133 10 C 0.372 3.628 11 O -0.423 6.423 12 N -0.335 5.335 13 C -0.030 4.030 14 C -0.157 4.157 15 C -0.162 4.162 16 C 0.061 3.939 17 H 0.062 0.938 18 N -0.331 5.331 19 C 0.035 3.965 20 C -0.406 4.406 21 H 0.081 0.919 22 C -0.235 4.235 23 N -0.576 5.576 24 Si 0.793 3.207 25 H -0.207 1.207 26 H -0.217 1.217 27 H -0.197 1.197 28 C -0.004 4.004 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.196 0.804 38 H 0.273 0.727 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.008 0.992 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.060 0.940 49 H 0.075 0.925 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.586 19.724 13.747 26.269 hybrid contribution -1.627 -0.605 0.435 1.790 sum 8.959 19.120 14.181 25.435 Atomic orbital electron populations 1.22278 0.86388 1.01717 1.01040 1.61777 1.08588 1.14497 1.43261 1.22360 1.00598 0.87830 1.00857 1.20385 0.89099 0.98598 0.92017 1.20585 0.96768 0.96037 0.96181 1.21960 0.91279 1.05765 1.05454 1.25445 1.01978 0.89880 0.88880 1.84150 1.24192 1.49377 1.47895 1.21487 0.81619 1.05545 1.04614 1.17180 0.85872 0.79829 0.79911 1.90876 1.14859 1.70264 1.66259 1.48220 1.08537 1.33804 1.42917 1.22536 0.77422 0.99211 1.03863 1.21853 1.02366 0.93176 0.98266 1.21921 0.94945 0.99608 0.99718 1.20776 0.94137 0.86842 0.92189 0.93765 1.44008 1.59023 1.25984 1.04061 1.20515 0.93414 0.98506 0.84110 1.19411 1.10996 1.08786 1.01362 0.91864 1.26038 0.98532 1.02205 0.96774 1.70175 1.35368 1.45249 1.06826 0.85380 0.78936 0.79209 0.77144 1.20727 1.21683 1.19661 1.21966 0.97750 0.88730 0.91979 0.94217 0.90855 0.93082 0.92090 0.91255 0.94243 0.91970 0.92109 0.80353 0.72670 0.85763 0.90279 0.92221 0.87322 0.92264 0.91821 0.99241 0.95464 0.94997 0.94028 0.92500 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.58 127.69 1.22 2.02 16 2 N -0.56 -14.85 4.68 -953.50 -4.46 -19.31 16 3 C 0.03 0.63 9.29 127.69 1.19 1.81 16 4 C 0.13 3.25 4.49 85.56 0.38 3.63 16 5 C -0.09 -2.24 4.53 -19.74 -0.09 -2.32 16 6 C -0.23 -3.40 10.65 22.07 0.23 -3.16 16 7 C 0.01 0.07 12.08 67.10 0.81 0.88 16 8 O -0.16 -3.21 7.07 -4.97 -0.04 -3.25 16 9 C -0.08 -2.26 6.85 24.07 0.16 -2.10 16 10 C 0.58 21.46 7.66 86.44 0.66 22.12 16 11 O -0.54 -24.17 14.36 -4.34 -0.06 -24.23 16 12 N -0.60 -21.02 2.97 -823.64 -2.45 -23.47 16 13 C 0.09 2.27 6.31 86.36 0.54 2.81 16 14 C -0.12 -2.88 6.08 30.67 0.19 -2.69 16 15 C -0.12 -4.06 5.10 30.62 0.16 -3.90 16 16 C 0.17 7.29 2.75 45.07 0.12 7.41 16 17 H 0.04 2.06 7.89 -2.39 -0.02 2.04 16 18 N -0.61 -31.78 2.80 -702.36 -1.97 -33.75 16 19 C 0.18 9.14 7.97 127.77 1.02 10.16 16 20 C -0.28 -15.83 9.48 84.03 0.80 -15.03 16 21 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 22 C -0.04 -2.28 5.32 84.86 0.45 -1.83 16 23 N -0.93 -56.77 10.63 21.65 0.23 -56.54 16 24 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 25 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 C 0.12 5.14 5.78 86.36 0.50 5.64 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.60 8.06 -2.39 -0.02 1.58 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.26 7.21 -2.39 -0.02 1.24 16 33 H 0.07 1.29 8.03 -2.39 -0.02 1.27 16 34 H 0.04 0.63 8.11 -2.39 -0.02 0.61 16 35 H 0.06 1.97 7.42 -2.38 -0.02 1.95 16 36 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 37 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.26 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.13 2.66 3.77 -56.54 -0.21 2.45 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.06 2.06 6.74 -2.38 -0.02 2.04 16 45 H -0.01 -0.60 7.79 -2.39 -0.02 -0.62 16 46 H 0.03 1.18 6.46 -2.39 -0.02 1.16 16 47 H 0.03 1.76 6.92 -2.38 -0.02 1.74 16 48 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 49 H 0.06 2.45 7.52 -2.39 -0.02 2.43 16 50 H 0.05 2.46 7.02 -2.39 -0.02 2.44 16 Total: -1.00 -76.31 389.49 2.36 -73.96 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.72 Total: 12.50 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 8.36 Total: 25.46 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -8.65 Total: -133.08 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.10 Total: -27.48 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -76.31 2.36 -73.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027546438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.738 kcal (2) G-P(sol) polarization free energy of solvation -76.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds