Wall clock time and date at job start Tue Mar 31 2020 18:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00189 * 2 1 4 4 O 1.21276 * 119.99979 * 185.58957 * 3 2 1 5 5 C 1.50706 * 120.00026 * 5.31302 * 3 2 1 6 6 H 1.08997 * 109.20178 * 312.91245 * 5 3 2 7 7 C 1.53291 * 109.20248 * 72.26420 * 5 3 2 8 8 N 1.46780 * 108.50031 * 60.21598 * 7 5 3 9 9 C 1.49422 * 112.11069 * 166.24699 * 8 7 5 10 10 C 1.57028 * 99.32622 * 246.53774 * 9 8 7 11 11 C 1.55452 * 101.36409 * 44.29537 * 10 9 8 12 12 C 1.49513 * 107.61434 * 57.80940 * 8 7 5 13 13 C 1.52884 * 111.06760 * 159.53612 * 12 8 7 14 14 C 1.50166 * 114.92489 * 302.47363 * 12 8 7 15 15 O 1.42798 * 109.20756 * 193.59542 * 5 3 2 16 16 C 1.46497 * 119.99887 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.89008 * 176.11391 * 16 2 1 18 18 C 1.55161 * 111.00350 * 300.00038 * 16 2 1 19 19 C 1.54324 * 102.94311 * 153.57589 * 18 16 2 20 20 N 1.47030 * 107.27021 * 337.80541 * 19 18 16 21 21 C 1.36933 * 125.64568 * 178.98725 * 20 19 18 22 22 H 1.08006 * 120.00110 * 174.90124 * 21 20 19 23 23 C 1.38809 * 120.00365 * 354.90093 * 21 20 19 24 24 N 1.31620 * 119.99782 * 5.77654 * 23 21 20 25 25 Si 1.86802 * 120.00273 * 185.76638 * 23 21 20 26 26 H 1.48499 * 109.46911 * 95.00108 * 25 23 21 27 27 H 1.48499 * 109.47496 * 214.99741 * 25 23 21 28 28 H 1.48502 * 109.47248 * 334.99880 * 25 23 21 29 29 C 1.47426 * 108.70279 * 358.93944 * 20 19 18 30 30 H 1.09000 * 109.47446 * 93.50970 * 1 2 3 31 31 H 1.09001 * 109.47564 * 213.51684 * 1 2 3 32 32 H 1.09003 * 109.47037 * 333.51417 * 1 2 3 33 33 H 1.09006 * 109.63249 * 179.97438 * 7 5 3 34 34 H 1.09000 * 109.63451 * 300.51356 * 7 5 3 35 35 H 1.09001 * 111.42386 * 4.06240 * 9 8 7 36 36 H 1.09004 * 111.43312 * 129.00741 * 9 8 7 37 37 H 1.09004 * 118.87519 * 179.55044 * 10 9 8 38 38 H 1.09005 * 114.72096 * 183.08823 * 11 10 9 39 39 H 1.09004 * 114.71646 * 48.77686 * 11 10 9 40 40 H 1.08998 * 114.69717 * 52.51209 * 13 12 8 41 41 H 1.08999 * 114.69774 * 186.76516 * 13 12 8 42 42 H 1.09000 * 109.69995 * 172.76331 * 14 12 8 43 43 H 1.08997 * 109.70355 * 293.37145 * 14 12 8 44 44 H 1.09002 * 110.71609 * 271.93437 * 18 16 2 45 45 H 1.08999 * 110.71937 * 35.21007 * 18 16 2 46 46 H 1.08997 * 109.88258 * 97.21987 * 19 18 16 47 47 H 1.08995 * 109.88680 * 218.23447 * 19 18 16 48 48 H 0.97004 * 119.99926 * 179.97438 * 24 23 21 49 49 H 1.08997 * 110.36261 * 265.29119 * 29 20 19 50 50 H 1.09000 * 110.36245 * 142.96918 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3473 1.1696 -0.1023 5 6 1.3903 2.4695 0.1209 6 1 0.5461 2.4631 -0.5686 7 6 0.8693 2.6204 1.5546 8 7 2.0167 2.6168 2.4699 9 6 1.6449 3.0834 3.8398 10 6 2.4668 4.4206 3.8850 11 6 2.1636 5.0141 2.4806 12 6 2.9221 3.7355 2.0649 13 6 3.8504 4.1341 3.2124 14 6 3.4079 3.6743 0.6453 15 8 2.2642 3.5469 -0.2178 16 6 2.1974 -1.2687 -0.0006 17 1 3.2717 -1.0973 -0.0695 18 6 1.8483 -2.1130 1.2535 19 6 2.1062 -3.5589 0.7796 20 7 2.0263 -3.5578 -0.6886 21 6 2.2157 -4.6453 -1.4988 22 1 2.0545 -4.5602 -2.5634 23 6 2.6149 -5.8571 -0.9522 24 7 2.7015 -5.9930 0.3541 25 14 3.0291 -7.2951 -2.0703 26 1 4.4936 -7.3269 -2.3137 27 1 2.6073 -8.5632 -1.4229 28 1 2.3156 -7.1382 -3.3632 29 6 1.7072 -2.1923 -1.1436 30 1 -0.3634 -0.0629 -1.0257 31 1 -0.3634 -0.8568 0.5674 32 1 -0.3633 0.9198 0.4583 33 1 0.3267 3.5610 1.6500 34 1 0.2077 1.7878 1.7934 35 1 0.5741 3.2712 3.9195 36 1 1.9816 2.3830 4.6042 37 1 2.4137 5.0411 4.7796 38 1 2.6837 5.9457 2.2574 39 1 1.1079 5.0264 2.2092 40 1 4.4092 3.3089 3.6538 41 1 4.4561 5.0201 3.0215 42 1 3.9511 4.5877 0.4030 43 1 4.0623 2.8120 0.5177 44 1 2.5043 -1.8571 2.0855 45 1 0.8025 -1.9786 1.5300 46 1 3.0979 -3.8815 1.0965 47 1 1.3497 -4.2253 1.1938 48 1 2.9801 -6.8400 0.7362 49 1 0.6324 -2.0815 -1.2864 50 1 2.2389 -1.9667 -2.0681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033278143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:37 Heat of formation + Delta-G solvation = 51.535639 kcal Electronic energy + Delta-G solvation = -31158.993305 eV Core-core repulsion = 27190.607418 eV Total energy + Delta-G solvation = -3968.385887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.49346 -40.01490 -37.90655 -36.60949 -35.03165 -33.80972 -32.11139 -29.88015 -29.59460 -28.99468 -27.45944 -26.66382 -25.80867 -24.86948 -24.36955 -23.50996 -21.00855 -20.56475 -20.08742 -19.27895 -18.62125 -17.33388 -16.97782 -16.74699 -16.26855 -15.93503 -15.66932 -15.20394 -14.71223 -14.63185 -14.41540 -14.16735 -13.96090 -13.60392 -13.25495 -13.04290 -12.96509 -12.72182 -12.46622 -12.34016 -12.17051 -12.10299 -11.89666 -11.73851 -11.67553 -11.43065 -11.23043 -10.93278 -10.87258 -10.78519 -10.67611 -10.50571 -10.27339 -10.14117 -10.05489 -9.77369 -9.70171 -9.08338 -8.61896 -8.57849 -8.28567 -6.81727 -5.70478 -3.03701 2.73277 3.11792 3.39590 3.42415 3.47606 3.49220 3.53902 3.91606 4.03911 4.23910 4.27183 4.45035 4.52840 4.65685 4.77874 4.81496 4.99645 5.06771 5.12387 5.26761 5.29826 5.36671 5.39771 5.43613 5.45754 5.47820 5.55311 5.56204 5.59031 5.64689 5.70104 5.73756 5.78385 5.81250 5.92130 6.00992 6.25196 6.28601 6.33812 6.55343 6.56867 6.63658 6.74856 6.83408 7.02258 7.55513 7.62319 7.66575 7.84386 8.26396 8.38237 9.22910 9.83134 10.48825 11.41262 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025058 B = 0.002765 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.123489 B =10124.819036 C =10358.923516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.597 5.597 3 C 0.507 3.493 4 O -0.529 6.529 5 C 0.077 3.923 6 H 0.126 0.874 7 C 0.008 3.992 8 N -0.465 5.465 9 C 0.035 3.965 10 C -0.144 4.144 11 C -0.176 4.176 12 C 0.020 3.980 13 C -0.111 4.111 14 C 0.070 3.930 15 O -0.357 6.357 16 C 0.126 3.874 17 H 0.105 0.895 18 C -0.150 4.150 19 C 0.179 3.821 20 N -0.603 5.603 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.041 0.959 48 H 0.252 0.748 49 H 0.021 0.979 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 23.889 7.092 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.330 5.330 3 C 0.294 3.706 4 O -0.406 6.406 5 C 0.015 3.985 6 H 0.144 0.856 7 C -0.121 4.121 8 N -0.189 5.189 9 C -0.092 4.092 10 C -0.162 4.162 11 C -0.215 4.215 12 C -0.070 4.070 13 C -0.148 4.148 14 C -0.006 4.006 15 O -0.274 6.274 16 C 0.023 3.977 17 H 0.123 0.877 18 C -0.189 4.189 19 C 0.054 3.946 20 N -0.330 5.330 21 C -0.357 4.357 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.547 23.165 6.858 24.583 hybrid contribution -0.434 -0.177 -0.245 0.529 sum -4.981 22.988 6.613 24.433 Atomic orbital electron populations 1.21928 0.80312 1.02939 1.02267 1.47796 1.06615 1.06050 1.72566 1.21035 0.88281 0.85331 0.75982 1.90558 1.14162 1.86352 1.49480 1.22147 0.93382 0.86274 0.96676 0.85618 1.23188 0.94182 1.02733 0.92006 1.67250 1.11739 1.38144 1.01760 1.23838 0.98676 0.94634 0.92093 1.24885 0.96761 0.97399 0.97199 1.24563 1.01060 0.98796 0.97054 1.23375 0.97052 0.90039 0.96572 1.23296 0.94702 1.01617 0.95200 1.22240 0.88879 1.04423 0.85039 1.88126 1.36497 1.48163 1.54619 1.22405 0.97400 0.80967 0.96941 0.87709 1.23204 1.00342 0.98516 0.96834 1.21145 1.00978 0.89017 0.83457 1.44384 1.83306 1.03051 1.02241 1.19054 1.39071 0.87490 0.90075 0.90405 1.24828 1.01554 0.97917 0.96004 1.69973 1.53216 1.24698 1.08827 0.86107 0.78301 0.81931 0.79483 1.21576 1.21768 1.20637 1.21744 0.96976 0.85944 0.94929 0.92217 0.90267 0.91457 0.92035 0.88231 0.91100 0.88883 0.87448 0.88942 0.91297 0.90324 0.88134 0.88615 0.87656 0.91926 0.92299 0.93145 0.94051 0.93740 0.96151 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 8.58 59.85 0.51 1.28 16 2 N -0.60 -9.09 2.91 -171.48 -0.50 -9.59 16 3 C 0.51 7.93 6.39 -10.98 -0.07 7.86 16 4 O -0.53 -10.20 13.03 -14.15 -0.18 -10.39 16 5 C 0.08 0.93 2.84 -27.73 -0.08 0.85 16 6 H 0.13 1.20 7.32 -51.93 -0.38 0.82 16 7 C 0.01 0.08 4.54 -3.74 -0.02 0.06 16 8 N -0.47 -5.32 5.57 -227.97 -1.27 -6.59 16 9 C 0.04 0.31 7.02 -0.23 0.00 0.31 16 10 C -0.14 -1.12 6.40 -98.01 -0.63 -1.75 16 11 C -0.18 -1.49 7.01 -30.15 -0.21 -1.70 16 12 C 0.02 0.21 1.59 -143.65 -0.23 -0.02 16 13 C -0.11 -0.97 7.81 -30.36 -0.24 -1.21 16 14 C 0.07 0.87 6.16 35.75 0.22 1.10 16 15 O -0.36 -4.78 10.53 -54.94 -0.58 -5.35 16 16 C 0.13 2.41 3.46 -65.78 -0.23 2.18 16 17 H 0.10 2.27 7.02 -51.93 -0.36 1.91 16 18 C -0.15 -2.88 6.52 -24.89 -0.16 -3.05 16 19 C 0.18 4.40 5.38 -3.06 -0.02 4.39 16 20 N -0.60 -15.67 3.39 -170.07 -0.58 -16.25 16 21 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 22 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 23 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 24 N -0.92 -27.25 10.35 55.49 0.57 -26.67 16 25 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.13 2.80 6.79 -2.53 -0.02 2.78 16 30 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 31 H 0.08 0.93 6.39 -51.93 -0.33 0.60 16 32 H 0.07 0.55 4.39 -51.93 -0.23 0.32 16 33 H 0.06 0.54 5.98 -51.93 -0.31 0.22 16 34 H 0.10 0.91 6.00 -51.93 -0.31 0.59 16 35 H 0.07 0.54 7.73 -51.93 -0.40 0.14 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.69 7.85 -51.93 -0.41 0.28 16 39 H 0.07 0.61 6.08 -51.93 -0.32 0.29 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.70 7.85 -51.93 -0.41 0.29 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.11 1.64 5.40 -51.93 -0.28 1.36 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.02 6.37 -51.93 -0.33 0.69 16 46 H 0.05 1.39 7.26 -51.93 -0.38 1.01 16 47 H 0.04 1.11 7.63 -51.93 -0.40 0.71 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.02 0.42 6.92 -51.93 -0.36 0.06 16 50 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -33.51 366.05 -11.15 -44.66 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.70 Total: 1.15 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.41 Total: 6.17 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -1.77 Total: -59.09 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.76 Total: -15.74 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.51 -11.15 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033278143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.200 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds