Wall clock time and date at job start Tue Mar 31 2020 18:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00189 * 2 1 4 4 O 1.21276 * 119.99979 * 185.58957 * 3 2 1 5 5 C 1.50706 * 120.00026 * 5.31302 * 3 2 1 6 6 H 1.08997 * 109.20178 * 312.91245 * 5 3 2 7 7 C 1.53291 * 109.20248 * 72.26420 * 5 3 2 8 8 N 1.46780 * 108.50031 * 60.21598 * 7 5 3 9 9 C 1.49422 * 112.11069 * 166.24699 * 8 7 5 10 10 C 1.57028 * 99.32622 * 246.53774 * 9 8 7 11 11 C 1.55452 * 101.36409 * 44.29537 * 10 9 8 12 12 C 1.49513 * 107.61434 * 57.80940 * 8 7 5 13 13 C 1.52884 * 111.06760 * 159.53612 * 12 8 7 14 14 C 1.50166 * 114.92489 * 302.47363 * 12 8 7 15 15 O 1.42798 * 109.20756 * 193.59542 * 5 3 2 16 16 C 1.46497 * 119.99887 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.89008 * 176.11391 * 16 2 1 18 18 C 1.55161 * 111.00350 * 300.00038 * 16 2 1 19 19 C 1.54324 * 102.94311 * 153.57589 * 18 16 2 20 20 N 1.47030 * 107.27021 * 337.80541 * 19 18 16 21 21 C 1.36933 * 125.64568 * 178.98725 * 20 19 18 22 22 H 1.08006 * 120.00110 * 174.90124 * 21 20 19 23 23 C 1.38809 * 120.00365 * 354.90093 * 21 20 19 24 24 N 1.31620 * 119.99782 * 5.77654 * 23 21 20 25 25 Si 1.86802 * 120.00273 * 185.76638 * 23 21 20 26 26 H 1.48499 * 109.46911 * 95.00108 * 25 23 21 27 27 H 1.48499 * 109.47496 * 214.99741 * 25 23 21 28 28 H 1.48502 * 109.47248 * 334.99880 * 25 23 21 29 29 C 1.47426 * 108.70279 * 358.93944 * 20 19 18 30 30 H 1.09000 * 109.47446 * 93.50970 * 1 2 3 31 31 H 1.09001 * 109.47564 * 213.51684 * 1 2 3 32 32 H 1.09003 * 109.47037 * 333.51417 * 1 2 3 33 33 H 1.09006 * 109.63249 * 179.97438 * 7 5 3 34 34 H 1.09000 * 109.63451 * 300.51356 * 7 5 3 35 35 H 1.09001 * 111.42386 * 4.06240 * 9 8 7 36 36 H 1.09004 * 111.43312 * 129.00741 * 9 8 7 37 37 H 1.09004 * 118.87519 * 179.55044 * 10 9 8 38 38 H 1.09005 * 114.72096 * 183.08823 * 11 10 9 39 39 H 1.09004 * 114.71646 * 48.77686 * 11 10 9 40 40 H 1.08998 * 114.69717 * 52.51209 * 13 12 8 41 41 H 1.08999 * 114.69774 * 186.76516 * 13 12 8 42 42 H 1.09000 * 109.69995 * 172.76331 * 14 12 8 43 43 H 1.08997 * 109.70355 * 293.37145 * 14 12 8 44 44 H 1.09002 * 110.71609 * 271.93437 * 18 16 2 45 45 H 1.08999 * 110.71937 * 35.21007 * 18 16 2 46 46 H 1.08997 * 109.88258 * 97.21987 * 19 18 16 47 47 H 1.08995 * 109.88680 * 218.23447 * 19 18 16 48 48 H 0.97004 * 119.99926 * 179.97438 * 24 23 21 49 49 H 1.08997 * 110.36261 * 265.29119 * 29 20 19 50 50 H 1.09000 * 110.36245 * 142.96918 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3473 1.1696 -0.1023 5 6 1.3903 2.4695 0.1209 6 1 0.5461 2.4631 -0.5686 7 6 0.8693 2.6204 1.5546 8 7 2.0167 2.6168 2.4699 9 6 1.6449 3.0834 3.8398 10 6 2.4668 4.4206 3.8850 11 6 2.1636 5.0141 2.4806 12 6 2.9221 3.7355 2.0649 13 6 3.8504 4.1341 3.2124 14 6 3.4079 3.6743 0.6453 15 8 2.2642 3.5469 -0.2178 16 6 2.1974 -1.2687 -0.0006 17 1 3.2717 -1.0973 -0.0695 18 6 1.8483 -2.1130 1.2535 19 6 2.1062 -3.5589 0.7796 20 7 2.0263 -3.5578 -0.6886 21 6 2.2157 -4.6453 -1.4988 22 1 2.0545 -4.5602 -2.5634 23 6 2.6149 -5.8571 -0.9522 24 7 2.7015 -5.9930 0.3541 25 14 3.0291 -7.2951 -2.0703 26 1 4.4936 -7.3269 -2.3137 27 1 2.6073 -8.5632 -1.4229 28 1 2.3156 -7.1382 -3.3632 29 6 1.7072 -2.1923 -1.1436 30 1 -0.3634 -0.0629 -1.0257 31 1 -0.3634 -0.8568 0.5674 32 1 -0.3633 0.9198 0.4583 33 1 0.3267 3.5610 1.6500 34 1 0.2077 1.7878 1.7934 35 1 0.5741 3.2712 3.9195 36 1 1.9816 2.3830 4.6042 37 1 2.4137 5.0411 4.7796 38 1 2.6837 5.9457 2.2574 39 1 1.1079 5.0264 2.2092 40 1 4.4092 3.3089 3.6538 41 1 4.4561 5.0201 3.0215 42 1 3.9511 4.5877 0.4030 43 1 4.0623 2.8120 0.5177 44 1 2.5043 -1.8571 2.0855 45 1 0.8025 -1.9786 1.5300 46 1 3.0979 -3.8815 1.0965 47 1 1.3497 -4.2253 1.1938 48 1 2.9801 -6.8400 0.7362 49 1 0.6324 -2.0815 -1.2864 50 1 2.2389 -1.9667 -2.0681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033278143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:36 Heat of formation + Delta-G solvation = 27.904797 kcal Electronic energy + Delta-G solvation = -31160.018015 eV Core-core repulsion = 27190.607418 eV Total energy + Delta-G solvation = -3969.410597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.24121 -41.19939 -39.33079 -37.88720 -36.40883 -34.81546 -33.93733 -31.33922 -30.51644 -30.33142 -28.95527 -27.85049 -26.67829 -26.29973 -25.51096 -24.50100 -22.24317 -22.04380 -21.29403 -20.48957 -19.68164 -18.94734 -18.37624 -17.74685 -17.29907 -16.87501 -16.69697 -16.62630 -16.29573 -15.89773 -15.50205 -15.41498 -15.25440 -14.60131 -14.46195 -14.21371 -14.11072 -13.98583 -13.80900 -13.68322 -13.54579 -13.21766 -12.98776 -12.92492 -12.76996 -12.75493 -12.49497 -12.32558 -12.19834 -12.08736 -12.01867 -11.93750 -11.81770 -11.55705 -11.50214 -11.16950 -11.07002 -10.72251 -10.09543 -9.61574 -9.44930 -8.92243 -7.87942 -5.23959 1.44657 1.47655 1.56051 1.56974 1.90143 2.49000 2.62963 2.69879 3.28370 3.30999 3.36878 3.40719 3.52139 3.59257 3.67702 3.86246 3.93481 3.97077 4.03518 4.08484 4.18716 4.21881 4.36631 4.40279 4.48430 4.55590 4.58155 4.63399 4.67411 4.72338 4.76008 4.81654 4.83721 4.88761 4.92756 4.93591 4.99981 5.02944 5.08990 5.16048 5.20448 5.41384 5.55229 5.57500 5.60778 5.70853 5.85710 5.92653 6.16300 6.45181 7.06674 7.18026 7.72745 8.37306 9.22560 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025058 B = 0.002765 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.123489 B =10124.819036 C =10358.923516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.595 5.595 3 C 0.500 3.500 4 O -0.574 6.574 5 C 0.081 3.919 6 H 0.157 0.843 7 C 0.012 3.988 8 N -0.499 5.499 9 C 0.033 3.967 10 C -0.129 4.129 11 C -0.162 4.162 12 C 0.003 3.997 13 C -0.114 4.114 14 C 0.070 3.930 15 O -0.368 6.368 16 C 0.144 3.856 17 H 0.071 0.929 18 C -0.128 4.128 19 C 0.189 3.811 20 N -0.625 5.625 21 C -0.246 4.246 22 H 0.082 0.918 23 C -0.063 4.063 24 N -0.949 5.949 25 Si 0.979 3.021 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.266 1.266 29 C 0.133 3.867 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.009 0.991 47 H 0.015 0.985 48 H 0.248 0.752 49 H 0.045 0.955 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 26.335 7.282 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.328 5.328 3 C 0.289 3.711 4 O -0.454 6.454 5 C 0.019 3.981 6 H 0.174 0.826 7 C -0.116 4.116 8 N -0.223 5.223 9 C -0.094 4.094 10 C -0.148 4.148 11 C -0.200 4.200 12 C -0.087 4.087 13 C -0.152 4.152 14 C -0.006 4.006 15 O -0.286 6.286 16 C 0.038 3.962 17 H 0.089 0.911 18 C -0.167 4.167 19 C 0.064 3.936 20 N -0.352 5.352 21 C -0.374 4.374 22 H 0.100 0.900 23 C -0.257 4.257 24 N -0.597 5.597 25 Si 0.807 3.193 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.190 1.190 29 C 0.007 3.993 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.147 0.853 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.028 0.972 47 H 0.033 0.967 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.905 25.654 7.037 27.483 hybrid contribution 0.328 -0.922 -0.343 1.037 sum -6.577 24.732 6.694 26.452 Atomic orbital electron populations 1.22253 0.77336 1.04910 1.03599 1.47804 1.08254 1.04372 1.72350 1.21905 0.88021 0.86513 0.74678 1.90566 1.16433 1.87081 1.51271 1.22381 0.93213 0.83419 0.99068 0.82590 1.23218 0.93949 1.04300 0.90153 1.67207 1.12659 1.39289 1.03145 1.23904 0.99923 0.94985 0.90623 1.24850 0.95212 0.96936 0.97777 1.24485 1.00852 0.97909 0.96779 1.23427 0.98242 0.91367 0.95644 1.23423 0.95343 1.01678 0.94751 1.22181 0.88385 1.03439 0.86605 1.88097 1.36786 1.48263 1.55411 1.21824 0.96092 0.82622 0.95637 0.91108 1.22979 1.02174 0.94762 0.96822 1.20862 0.97788 0.91823 0.83155 1.44663 1.83367 1.04414 1.02740 1.19441 1.38791 0.88502 0.90707 0.89981 1.25692 1.01850 1.00670 0.97454 1.70187 1.54091 1.24983 1.10453 0.85050 0.77726 0.78343 0.78155 1.21688 1.21787 1.19037 1.21848 0.98003 0.84250 0.95176 0.90936 0.90395 0.87722 0.89859 0.87026 0.89257 0.89669 0.85256 0.87709 0.91055 0.92316 0.86281 0.86969 0.91601 0.91524 0.89393 0.97244 0.96726 0.94274 0.93735 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 8.58 127.77 1.10 2.24 16 2 N -0.59 -17.32 2.91 -814.82 -2.37 -19.69 16 3 C 0.50 15.31 6.39 87.66 0.56 15.87 16 4 O -0.57 -22.96 13.03 15.83 0.21 -22.75 16 5 C 0.08 1.74 2.84 29.95 0.08 1.83 16 6 H 0.16 2.34 7.32 -2.39 -0.02 2.33 16 7 C 0.01 0.21 4.54 86.42 0.39 0.60 16 8 N -0.50 -10.48 5.57 -875.16 -4.87 -15.35 16 9 C 0.03 0.50 7.02 87.23 0.61 1.11 16 10 C -0.13 -1.63 6.40 -15.58 -0.10 -1.73 16 11 C -0.16 -2.20 7.01 28.38 0.20 -2.00 16 12 C 0.00 0.07 1.59 -5.73 -0.01 0.06 16 13 C -0.11 -1.86 7.81 28.25 0.22 -1.64 16 14 C 0.07 1.72 6.16 71.07 0.44 2.16 16 15 O -0.37 -9.31 10.53 -130.14 -1.37 -10.68 16 16 C 0.14 5.51 3.46 46.39 0.16 5.67 16 17 H 0.07 3.23 7.02 -2.39 -0.02 3.21 16 18 C -0.13 -4.95 6.52 31.78 0.21 -4.74 16 19 C 0.19 9.66 5.38 86.73 0.47 10.13 16 20 N -0.62 -33.27 3.39 -691.97 -2.35 -35.62 16 21 C -0.25 -14.17 10.27 84.03 0.86 -13.31 16 22 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 23 C -0.06 -3.69 5.48 84.86 0.47 -3.23 16 24 N -0.95 -58.17 10.35 21.65 0.22 -57.95 16 25 Si 0.98 46.69 29.56 68.60 2.03 48.72 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 29 C 0.13 5.70 6.79 86.86 0.59 6.29 16 30 H 0.07 1.24 7.97 -2.39 -0.02 1.22 16 31 H 0.08 1.55 6.39 -2.39 -0.02 1.54 16 32 H 0.10 1.22 4.39 -2.39 -0.01 1.21 16 33 H 0.08 1.07 5.98 -2.38 -0.01 1.05 16 34 H 0.11 1.56 6.00 -2.39 -0.01 1.54 16 35 H 0.09 1.01 7.73 -2.39 -0.02 1.00 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.18 7.85 -2.38 -0.02 1.16 16 39 H 0.07 0.95 6.08 -2.38 -0.01 0.94 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.12 1.43 7.85 -2.39 -0.02 1.41 16 42 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 2.16 5.40 -2.39 -0.01 2.15 16 44 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.09 2.89 6.37 -2.39 -0.02 2.88 16 46 H 0.01 0.54 7.26 -2.39 -0.02 0.53 16 47 H 0.01 0.81 7.63 -2.39 -0.02 0.79 16 48 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 49 H 0.04 1.72 6.92 -2.39 -0.02 1.70 16 50 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -77.30 366.05 -1.31 -78.60 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.95 Total: 15.41 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.25 Total: 19.30 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -9.37 Total: -128.60 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.16 Total: -33.43 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.30 -1.31 -78.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033278143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.507 kcal (2) G-P(sol) polarization free energy of solvation -77.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds