Wall clock time and date at job start Tue Mar 31 2020 18:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 119.99869 * 2 1 4 4 O 1.21273 * 120.00652 * 4.89864 * 3 2 1 5 5 C 1.50711 * 119.99541 * 184.90019 * 3 2 1 6 6 H 1.08997 * 109.20192 * 48.94466 * 5 3 2 7 7 C 1.53288 * 109.20606 * 289.58464 * 5 3 2 8 8 N 1.46785 * 108.49923 * 179.52197 * 7 5 3 9 9 C 1.49427 * 112.10563 * 166.24555 * 8 7 5 10 10 C 1.57031 * 99.32278 * 246.54134 * 9 8 7 11 11 C 1.55455 * 101.36422 * 44.29783 * 10 9 8 12 12 C 1.49511 * 107.60812 * 57.81140 * 8 7 5 13 13 C 1.52887 * 111.06503 * 159.52969 * 12 8 7 14 14 C 1.50168 * 114.92959 * 302.47024 * 12 8 7 15 15 O 1.42806 * 109.20242 * 168.24947 * 5 3 2 16 16 C 1.46504 * 119.99681 * 179.97438 * 2 1 3 17 17 H 1.08996 * 110.77672 * 179.23750 * 16 2 1 18 18 C 1.55153 * 110.72122 * 302.47848 * 16 2 1 19 19 C 1.55128 * 101.48701 * 82.69663 * 18 16 2 20 20 N 1.47415 * 104.72338 * 37.29434 * 19 18 16 21 21 C 1.36939 * 125.65216 * 155.81265 * 20 19 18 22 22 H 1.07997 * 120.00252 * 191.26569 * 21 20 19 23 23 C 1.38813 * 119.99198 * 11.27407 * 21 20 19 24 24 N 1.31615 * 120.00482 * 8.78781 * 23 21 20 25 25 Si 1.86808 * 119.99623 * 188.78863 * 23 21 20 26 26 H 1.48502 * 109.46989 * 265.02166 * 25 23 21 27 27 H 1.48496 * 109.47108 * 145.02210 * 25 23 21 28 28 H 1.48498 * 109.46962 * 25.01944 * 25 23 21 29 29 C 1.47023 * 108.70484 * 335.55660 * 20 19 18 30 30 H 1.09001 * 109.47284 * 264.82191 * 1 2 3 31 31 H 1.08997 * 109.47338 * 24.81866 * 1 2 3 32 32 H 1.09001 * 109.47542 * 144.82122 * 1 2 3 33 33 H 1.08996 * 109.63425 * 299.23415 * 7 5 3 34 34 H 1.09003 * 109.63013 * 59.81932 * 7 5 3 35 35 H 1.09002 * 111.42503 * 4.06886 * 9 8 7 36 36 H 1.08996 * 111.42416 * 129.01322 * 9 8 7 37 37 H 1.09005 * 118.86913 * 179.55308 * 10 9 8 38 38 H 1.08998 * 114.71684 * 183.08100 * 11 10 9 39 39 H 1.09004 * 114.76199 * 48.77889 * 11 10 9 40 40 H 1.09006 * 114.69562 * 52.51419 * 13 12 8 41 41 H 1.08995 * 114.69952 * 186.75973 * 13 12 8 42 42 H 1.08997 * 109.70071 * 172.77139 * 14 12 8 43 43 H 1.08997 * 109.69985 * 293.33969 * 14 12 8 44 44 H 1.09001 * 111.00096 * 200.93565 * 18 16 2 45 45 H 1.09001 * 111.00353 * 324.78094 * 18 16 2 46 46 H 1.08997 * 110.49283 * 278.45081 * 19 18 16 47 47 H 1.08999 * 110.33988 * 156.05758 * 19 18 16 48 48 H 0.97002 * 119.99949 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.88752 * 120.70382 * 29 20 19 50 50 H 1.09001 * 109.88357 * 241.71513 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2156 0.0897 5 6 3.6418 1.1695 -0.1115 6 1 3.9408 0.5277 -0.9402 7 6 4.2448 0.6272 1.1893 8 7 5.7069 0.6255 1.0597 9 6 6.3878 0.4292 2.3752 10 6 7.0722 1.8351 2.5197 11 6 5.9167 2.7835 2.0930 12 6 6.1365 2.0270 0.7655 13 6 7.6128 2.2321 1.1059 14 6 5.5210 2.6331 -0.4628 15 8 4.0921 2.5011 -0.3635 16 6 2.1974 -1.2688 0.0006 17 1 3.2732 -1.0942 -0.0131 18 6 1.7970 -2.1333 1.2251 19 6 0.4935 -2.8035 0.7172 20 7 0.7451 -3.0792 -0.7089 21 6 0.1221 -4.0416 -1.4578 22 1 0.4983 -4.2899 -2.4393 23 6 -0.9932 -4.6979 -0.9555 24 7 -1.5557 -4.2811 0.1590 25 14 -1.6956 -6.1730 -1.8613 26 1 -2.7975 -5.7282 -2.7519 27 1 -2.2196 -7.1543 -0.8777 28 1 -0.6281 -6.8089 -2.6744 29 6 1.7714 -2.1458 -1.1957 30 1 -0.3634 -0.0927 1.0235 31 1 -0.3634 0.9327 -0.4313 32 1 -0.3634 -0.8400 -0.5921 33 1 3.9517 1.2655 2.0228 34 1 3.8911 -0.3895 1.3610 35 1 5.6675 0.2529 3.1740 36 1 7.1270 -0.3703 2.3255 37 1 7.6680 2.0415 3.4088 38 1 6.1815 3.8405 2.0647 39 1 4.9607 2.5853 2.5778 40 1 8.2892 1.5050 0.6563 41 1 7.9603 3.2619 1.0239 42 1 5.7891 3.6877 -0.5260 43 1 5.8783 2.1094 -1.3495 44 1 2.5627 -2.8772 1.4453 45 1 1.5994 -1.5088 2.0964 46 1 -0.3527 -2.1257 0.8290 47 1 0.3102 -3.7327 1.2566 48 1 -2.3348 -4.7400 0.5102 49 1 2.6300 -2.7019 -1.5720 50 1 1.3586 -1.5210 -1.9878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033278146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:46 Heat of formation + Delta-G solvation = 51.411056 kcal Electronic energy + Delta-G solvation = -31309.774816 eV Core-core repulsion = 27341.383527 eV Total energy + Delta-G solvation = -3968.391289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.46902 -40.08076 -37.95518 -37.12255 -34.45986 -33.81311 -31.93364 -30.21237 -29.65687 -29.22301 -27.86993 -26.38849 -25.74744 -24.63263 -24.48636 -23.30126 -21.07808 -20.66700 -20.27100 -19.32748 -18.69978 -17.45715 -17.08974 -16.68850 -16.20386 -15.93410 -15.33537 -15.27748 -14.91815 -14.70376 -14.66465 -14.17302 -13.90225 -13.69087 -13.39364 -13.11151 -12.95528 -12.63374 -12.42231 -12.24213 -12.07184 -11.97499 -11.76212 -11.70900 -11.63859 -11.26649 -11.13770 -10.98097 -10.97096 -10.92204 -10.86666 -10.52522 -10.23061 -10.14281 -10.03555 -9.77223 -9.72795 -9.45651 -8.89748 -8.65155 -8.28493 -6.86093 -5.81023 -3.14382 2.67510 2.85147 3.36072 3.36649 3.42997 3.44457 3.72813 3.89316 4.00836 4.18924 4.27578 4.44742 4.57844 4.63295 4.74132 4.86557 4.97906 5.09336 5.15755 5.21327 5.26332 5.33285 5.34815 5.38126 5.39511 5.42295 5.47689 5.52494 5.58286 5.63538 5.63697 5.73040 5.77976 5.93604 6.09760 6.13894 6.18775 6.20787 6.41063 6.43294 6.50795 6.54210 6.61901 6.78312 6.92942 7.39784 7.51869 7.67700 7.72526 8.18874 8.35701 9.13022 9.74379 10.40906 11.31954 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002995 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.604712 B = 9347.248798 C = 9811.399770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.589 5.589 3 C 0.519 3.481 4 O -0.528 6.528 5 C 0.080 3.920 6 H 0.091 0.909 7 C 0.003 3.997 8 N -0.468 5.468 9 C 0.035 3.965 10 C -0.144 4.144 11 C -0.174 4.174 12 C 0.008 3.992 13 C -0.108 4.108 14 C 0.092 3.908 15 O -0.353 6.353 16 C 0.110 3.890 17 H 0.098 0.902 18 C -0.159 4.159 19 C 0.167 3.833 20 N -0.600 5.600 21 C -0.231 4.231 22 H 0.076 0.924 23 C -0.004 4.004 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.067 0.933 48 H 0.253 0.747 49 H 0.035 0.965 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.308 11.976 4.769 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.322 5.322 3 C 0.305 3.695 4 O -0.404 6.404 5 C 0.018 3.982 6 H 0.108 0.892 7 C -0.126 4.126 8 N -0.192 5.192 9 C -0.093 4.093 10 C -0.162 4.162 11 C -0.212 4.212 12 C -0.082 4.082 13 C -0.146 4.146 14 C 0.015 3.985 15 O -0.270 6.270 16 C 0.006 3.994 17 H 0.116 0.884 18 C -0.198 4.198 19 C 0.042 3.958 20 N -0.327 5.327 21 C -0.360 4.360 22 H 0.094 0.906 23 C -0.201 4.201 24 N -0.563 5.563 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.002 4.002 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 17.759 12.074 4.361 21.913 hybrid contribution -0.572 -0.499 0.288 0.811 sum 17.188 11.575 4.649 21.237 Atomic orbital electron populations 1.21886 0.77842 1.03675 1.02384 1.47765 1.07619 1.04922 1.71941 1.19939 0.88331 0.83898 0.77356 1.90684 1.69695 1.31110 1.48895 1.21869 0.92386 0.85944 0.98000 0.89154 1.23279 0.88777 1.03253 0.97260 1.67246 1.05668 1.20100 1.26156 1.23847 0.98050 0.96526 0.90838 1.24889 0.97990 0.95215 0.98140 1.24535 0.99029 0.99580 0.98078 1.23459 0.97993 0.90494 0.96264 1.23293 0.93587 1.02070 0.95634 1.21852 0.80182 1.01231 0.95220 1.88200 1.20859 1.25628 1.92326 1.22508 0.95424 0.83274 0.98166 0.88428 1.23430 1.01900 0.98592 0.95913 1.21628 0.90785 0.98789 0.84568 1.44477 1.44433 1.37074 1.06693 1.18994 1.06775 1.10821 0.99378 0.90647 1.24818 0.96980 1.00221 0.98065 1.69933 1.22968 1.41315 1.22102 0.86135 0.78892 0.82333 0.78580 1.21612 1.21649 1.20592 1.21652 0.93313 0.91373 0.93859 0.92714 0.91502 0.88459 0.92270 0.87473 0.90827 0.88703 0.87309 0.88782 0.90990 0.90371 0.88082 0.87694 0.91728 0.90800 0.91787 0.94324 0.91440 0.93648 0.94770 0.95201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.53 8.44 59.85 0.51 2.03 16 2 N -0.59 -10.01 2.83 -171.84 -0.49 -10.49 16 3 C 0.52 8.95 7.02 -10.98 -0.08 8.88 16 4 O -0.53 -10.91 16.07 -14.23 -0.23 -11.14 16 5 C 0.08 1.13 2.31 -27.73 -0.06 1.07 16 6 H 0.09 1.22 7.41 -51.93 -0.38 0.84 16 7 C 0.00 0.04 4.28 -3.74 -0.02 0.02 16 8 N -0.47 -5.01 6.03 -227.97 -1.37 -6.38 16 9 C 0.03 0.30 7.02 -0.23 0.00 0.30 16 10 C -0.14 -1.08 6.40 -98.01 -0.63 -1.70 16 11 C -0.17 -1.58 7.01 -30.16 -0.21 -1.80 16 12 C 0.01 0.08 1.59 -143.65 -0.23 -0.15 16 13 C -0.11 -0.77 7.81 -30.37 -0.24 -1.01 16 14 C 0.09 0.96 6.72 35.75 0.24 1.20 16 15 O -0.35 -5.15 10.01 -55.02 -0.55 -5.70 16 16 C 0.11 1.78 2.58 -66.09 -0.17 1.61 16 17 H 0.10 1.35 4.33 -51.93 -0.22 1.13 16 18 C -0.16 -2.70 6.31 -24.47 -0.15 -2.85 16 19 C 0.17 3.72 4.56 -2.42 -0.01 3.71 16 20 N -0.60 -14.27 2.96 -169.94 -0.50 -14.77 16 21 C -0.23 -6.16 10.23 -15.06 -0.15 -6.31 16 22 H 0.08 1.97 7.84 -52.49 -0.41 1.55 16 23 C 0.00 -0.10 5.40 -17.43 -0.09 -0.20 16 24 N -0.92 -25.73 10.70 55.49 0.59 -25.13 16 25 Si 0.91 21.47 29.56 -169.99 -5.03 16.44 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.12 2.43 6.14 -3.06 -0.02 2.41 16 30 H 0.05 0.97 7.64 -51.93 -0.40 0.58 16 31 H 0.07 1.21 7.34 -51.93 -0.38 0.83 16 32 H 0.10 2.02 5.65 -51.93 -0.29 1.73 16 33 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 34 H 0.11 1.29 5.32 -51.93 -0.28 1.01 16 35 H 0.07 0.63 7.73 -51.93 -0.40 0.23 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 39 H 0.07 0.80 6.08 -51.93 -0.32 0.48 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.55 7.84 -51.93 -0.41 0.14 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.04 0.92 5.44 -51.93 -0.28 0.64 16 47 H 0.07 1.71 7.00 -51.93 -0.36 1.34 16 48 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.03 0.61 7.92 -51.93 -0.41 0.20 16 LS Contribution 368.13 15.07 5.55 5.55 Total: -1.00 -31.30 368.13 -11.13 -42.43 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.78 Total: 1.98 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.32 Total: 7.21 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -1.77 Total: -56.78 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.78 Total: -16.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.30 -11.13 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033278146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.845 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds