Wall clock time and date at job start Tue Mar 31 2020 18:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 119.99869 * 2 1 4 4 O 1.21273 * 120.00652 * 4.89864 * 3 2 1 5 5 C 1.50711 * 119.99541 * 184.90019 * 3 2 1 6 6 H 1.08997 * 109.20192 * 48.94466 * 5 3 2 7 7 C 1.53288 * 109.20606 * 289.58464 * 5 3 2 8 8 N 1.46785 * 108.49923 * 179.52197 * 7 5 3 9 9 C 1.49427 * 112.10563 * 166.24555 * 8 7 5 10 10 C 1.57031 * 99.32278 * 246.54134 * 9 8 7 11 11 C 1.55455 * 101.36422 * 44.29783 * 10 9 8 12 12 C 1.49511 * 107.60812 * 57.81140 * 8 7 5 13 13 C 1.52887 * 111.06503 * 159.52969 * 12 8 7 14 14 C 1.50168 * 114.92959 * 302.47024 * 12 8 7 15 15 O 1.42806 * 109.20242 * 168.24947 * 5 3 2 16 16 C 1.46504 * 119.99681 * 179.97438 * 2 1 3 17 17 H 1.08996 * 110.77672 * 179.23750 * 16 2 1 18 18 C 1.55153 * 110.72122 * 302.47848 * 16 2 1 19 19 C 1.55128 * 101.48701 * 82.69663 * 18 16 2 20 20 N 1.47415 * 104.72338 * 37.29434 * 19 18 16 21 21 C 1.36939 * 125.65216 * 155.81265 * 20 19 18 22 22 H 1.07997 * 120.00252 * 191.26569 * 21 20 19 23 23 C 1.38813 * 119.99198 * 11.27407 * 21 20 19 24 24 N 1.31615 * 120.00482 * 8.78781 * 23 21 20 25 25 Si 1.86808 * 119.99623 * 188.78863 * 23 21 20 26 26 H 1.48502 * 109.46989 * 265.02166 * 25 23 21 27 27 H 1.48496 * 109.47108 * 145.02210 * 25 23 21 28 28 H 1.48498 * 109.46962 * 25.01944 * 25 23 21 29 29 C 1.47023 * 108.70484 * 335.55660 * 20 19 18 30 30 H 1.09001 * 109.47284 * 264.82191 * 1 2 3 31 31 H 1.08997 * 109.47338 * 24.81866 * 1 2 3 32 32 H 1.09001 * 109.47542 * 144.82122 * 1 2 3 33 33 H 1.08996 * 109.63425 * 299.23415 * 7 5 3 34 34 H 1.09003 * 109.63013 * 59.81932 * 7 5 3 35 35 H 1.09002 * 111.42503 * 4.06886 * 9 8 7 36 36 H 1.08996 * 111.42416 * 129.01322 * 9 8 7 37 37 H 1.09005 * 118.86913 * 179.55308 * 10 9 8 38 38 H 1.08998 * 114.71684 * 183.08100 * 11 10 9 39 39 H 1.09004 * 114.76199 * 48.77889 * 11 10 9 40 40 H 1.09006 * 114.69562 * 52.51419 * 13 12 8 41 41 H 1.08995 * 114.69952 * 186.75973 * 13 12 8 42 42 H 1.08997 * 109.70071 * 172.77139 * 14 12 8 43 43 H 1.08997 * 109.69985 * 293.33969 * 14 12 8 44 44 H 1.09001 * 111.00096 * 200.93565 * 18 16 2 45 45 H 1.09001 * 111.00353 * 324.78094 * 18 16 2 46 46 H 1.08997 * 110.49283 * 278.45081 * 19 18 16 47 47 H 1.08999 * 110.33988 * 156.05758 * 19 18 16 48 48 H 0.97002 * 119.99949 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.88752 * 120.70382 * 29 20 19 50 50 H 1.09001 * 109.88357 * 241.71513 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2156 0.0897 5 6 3.6418 1.1695 -0.1115 6 1 3.9408 0.5277 -0.9402 7 6 4.2448 0.6272 1.1893 8 7 5.7069 0.6255 1.0597 9 6 6.3878 0.4292 2.3752 10 6 7.0722 1.8351 2.5197 11 6 5.9167 2.7835 2.0930 12 6 6.1365 2.0270 0.7655 13 6 7.6128 2.2321 1.1059 14 6 5.5210 2.6331 -0.4628 15 8 4.0921 2.5011 -0.3635 16 6 2.1974 -1.2688 0.0006 17 1 3.2732 -1.0942 -0.0131 18 6 1.7970 -2.1333 1.2251 19 6 0.4935 -2.8035 0.7172 20 7 0.7451 -3.0792 -0.7089 21 6 0.1221 -4.0416 -1.4578 22 1 0.4983 -4.2899 -2.4393 23 6 -0.9932 -4.6979 -0.9555 24 7 -1.5557 -4.2811 0.1590 25 14 -1.6956 -6.1730 -1.8613 26 1 -2.7975 -5.7282 -2.7519 27 1 -2.2196 -7.1543 -0.8777 28 1 -0.6281 -6.8089 -2.6744 29 6 1.7714 -2.1458 -1.1957 30 1 -0.3634 -0.0927 1.0235 31 1 -0.3634 0.9327 -0.4313 32 1 -0.3634 -0.8400 -0.5921 33 1 3.9517 1.2655 2.0228 34 1 3.8911 -0.3895 1.3610 35 1 5.6675 0.2529 3.1740 36 1 7.1270 -0.3703 2.3255 37 1 7.6680 2.0415 3.4088 38 1 6.1815 3.8405 2.0647 39 1 4.9607 2.5853 2.5778 40 1 8.2892 1.5050 0.6563 41 1 7.9603 3.2619 1.0239 42 1 5.7891 3.6877 -0.5260 43 1 5.8783 2.1094 -1.3495 44 1 2.5627 -2.8772 1.4453 45 1 1.5994 -1.5088 2.0964 46 1 -0.3527 -2.1257 0.8290 47 1 0.3102 -3.7327 1.2566 48 1 -2.3348 -4.7400 0.5102 49 1 2.6300 -2.7019 -1.5720 50 1 1.3586 -1.5210 -1.9878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033278146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:45 Heat of formation + Delta-G solvation = 30.333718 kcal Electronic energy + Delta-G solvation = -31310.688797 eV Core-core repulsion = 27341.383527 eV Total energy + Delta-G solvation = -3969.305271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.20488 -41.43434 -39.35589 -38.32480 -36.04633 -34.77019 -33.78293 -31.28441 -30.96807 -30.40629 -29.39699 -27.74373 -26.54978 -26.22979 -25.39513 -24.37721 -22.52037 -22.04571 -21.32055 -20.37329 -19.75916 -18.91264 -18.69865 -17.88702 -17.08924 -16.81310 -16.72783 -16.53268 -16.46187 -16.16087 -15.73030 -15.48729 -15.25287 -14.76621 -14.50476 -14.24977 -14.06540 -13.91493 -13.65348 -13.55092 -13.47139 -13.30165 -13.22382 -12.92911 -12.78027 -12.72465 -12.51188 -12.35683 -12.07091 -12.05249 -11.90162 -11.84765 -11.73063 -11.67683 -11.56679 -11.15089 -10.86102 -10.65206 -10.62603 -9.78519 -9.67371 -8.80934 -7.86165 -5.20040 1.33125 1.48107 1.48827 1.58038 1.60001 2.50792 2.59868 2.67831 3.21145 3.29057 3.34278 3.41586 3.46038 3.60858 3.65876 3.76137 3.77991 3.91604 3.94778 4.00036 4.08508 4.21260 4.38037 4.42089 4.52169 4.54454 4.57507 4.62594 4.63661 4.68498 4.70473 4.81679 4.86692 4.88239 4.91609 4.93666 4.97682 5.01133 5.08058 5.10864 5.17149 5.34238 5.47613 5.48892 5.62844 5.72012 5.79295 5.91744 6.22656 6.29911 6.96711 7.11279 7.78214 8.43780 9.25264 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002995 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.604712 B = 9347.248798 C = 9811.399770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.588 5.588 3 C 0.519 3.481 4 O -0.566 6.566 5 C 0.087 3.913 6 H 0.101 0.899 7 C 0.013 3.987 8 N -0.476 5.476 9 C 0.029 3.971 10 C -0.133 4.133 11 C -0.179 4.179 12 C -0.004 4.004 13 C -0.093 4.093 14 C 0.086 3.914 15 O -0.381 6.381 16 C 0.126 3.874 17 H 0.133 0.867 18 C -0.141 4.141 19 C 0.171 3.829 20 N -0.617 5.617 21 C -0.241 4.241 22 H 0.077 0.923 23 C -0.058 4.058 24 N -0.943 5.943 25 Si 0.972 3.028 26 H -0.291 1.291 27 H -0.295 1.295 28 H -0.269 1.269 29 C 0.122 3.878 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.016 0.984 47 H 0.031 0.969 48 H 0.247 0.753 49 H 0.052 0.948 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.653 12.348 4.861 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.321 5.321 3 C 0.307 3.693 4 O -0.445 6.445 5 C 0.026 3.974 6 H 0.118 0.882 7 C -0.116 4.116 8 N -0.200 5.200 9 C -0.098 4.098 10 C -0.151 4.151 11 C -0.218 4.218 12 C -0.094 4.094 13 C -0.130 4.130 14 C 0.010 3.990 15 O -0.299 6.299 16 C 0.023 3.977 17 H 0.150 0.850 18 C -0.181 4.181 19 C 0.046 3.954 20 N -0.344 5.344 21 C -0.370 4.370 22 H 0.095 0.905 23 C -0.252 4.252 24 N -0.591 5.591 25 Si 0.800 3.200 26 H -0.218 1.218 27 H -0.221 1.221 28 H -0.194 1.194 29 C -0.004 4.004 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.034 0.966 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 21.154 12.446 4.440 24.942 hybrid contribution -1.595 -0.540 0.218 1.698 sum 19.559 11.906 4.658 23.367 Atomic orbital electron populations 1.21622 0.79056 1.02211 1.01821 1.47804 1.07041 1.05510 1.71720 1.20553 0.89812 0.83005 0.75969 1.90660 1.70845 1.32384 1.50582 1.21770 0.89758 0.86491 0.99400 0.88171 1.23120 0.90178 1.02751 0.95579 1.67263 1.04289 1.20995 1.27412 1.23966 0.98198 0.97802 0.89805 1.24899 0.97236 0.93693 0.99296 1.24597 0.98608 1.00676 0.97880 1.23627 0.99947 0.89907 0.95892 1.23338 0.91635 1.03449 0.94620 1.22138 0.78043 1.02766 0.96092 1.88158 1.23562 1.25659 1.92563 1.22483 0.96895 0.82154 0.96162 0.84967 1.23291 0.99408 0.98851 0.96509 1.21429 0.92959 0.96981 0.83983 1.44702 1.44918 1.37425 1.07371 1.19329 1.06776 1.11233 0.99648 0.90482 1.25551 0.97730 1.02797 0.99073 1.70119 1.23218 1.42312 1.23480 0.85173 0.78154 0.79300 0.77330 1.21831 1.22138 1.19393 1.21802 0.92566 0.91160 0.94872 0.92624 0.91758 0.91167 0.93391 0.87241 0.91029 0.87510 0.85370 0.87568 0.93520 0.89963 0.85977 0.85787 0.91007 0.88790 0.90169 0.96574 0.95030 0.94380 0.93062 0.96303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.59 8.44 127.77 1.08 4.66 16 2 N -0.59 -19.76 2.83 -815.96 -2.31 -22.07 16 3 C 0.52 17.67 7.02 87.66 0.62 18.28 16 4 O -0.57 -23.65 16.07 15.91 0.26 -23.40 16 5 C 0.09 2.35 2.31 29.95 0.07 2.42 16 6 H 0.10 2.48 7.41 -2.39 -0.02 2.46 16 7 C 0.01 0.29 4.28 86.42 0.37 0.66 16 8 N -0.48 -8.89 6.03 -875.15 -5.27 -14.17 16 9 C 0.03 0.43 7.02 87.23 0.61 1.04 16 10 C -0.13 -1.53 6.40 -15.58 -0.10 -1.63 16 11 C -0.18 -2.85 7.01 28.37 0.20 -2.65 16 12 C 0.00 -0.06 1.59 -5.73 -0.01 -0.07 16 13 C -0.09 -0.96 7.81 28.24 0.22 -0.74 16 14 C 0.09 1.59 6.72 71.07 0.48 2.07 16 15 O -0.38 -10.68 10.01 -130.06 -1.30 -11.98 16 16 C 0.13 3.89 2.58 46.18 0.12 4.00 16 17 H 0.13 3.25 4.33 -2.39 -0.01 3.24 16 18 C -0.14 -4.61 6.31 32.06 0.20 -4.40 16 19 C 0.17 7.77 4.56 86.93 0.40 8.16 16 20 N -0.62 -29.62 2.96 -691.57 -2.05 -31.67 16 21 C -0.24 -12.95 10.23 84.03 0.86 -12.09 16 22 H 0.08 4.02 7.84 -2.91 -0.02 3.99 16 23 C -0.06 -3.17 5.40 84.86 0.46 -2.71 16 24 N -0.94 -54.66 10.70 21.65 0.23 -54.43 16 25 Si 0.97 44.77 29.56 68.60 2.03 46.80 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 29 C 0.12 4.65 6.14 86.73 0.53 5.18 16 30 H 0.06 2.05 7.64 -2.39 -0.02 2.03 16 31 H 0.06 2.41 7.34 -2.39 -0.02 2.40 16 32 H 0.07 3.04 5.65 -2.39 -0.01 3.03 16 33 H 0.05 1.20 5.97 -2.39 -0.01 1.18 16 34 H 0.11 2.34 5.32 -2.39 -0.01 2.33 16 35 H 0.07 1.07 7.73 -2.39 -0.02 1.05 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.11 1.40 7.85 -2.39 -0.02 1.38 16 39 H 0.05 0.99 6.08 -2.38 -0.01 0.97 16 40 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.12 0.77 7.84 -2.39 -0.02 0.75 16 42 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.02 0.81 5.44 -2.39 -0.01 0.79 16 47 H 0.03 1.64 7.00 -2.39 -0.02 1.62 16 48 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.02 0.77 7.92 -2.39 -0.02 0.75 16 Total: -1.00 -69.94 368.13 -1.36 -71.31 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.95 Total: 17.42 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 6.10 Total: 22.18 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -9.40 Total: -122.33 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -1.05 Total: -35.37 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.94 -1.36 -71.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033278146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.639 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds