Wall clock time and date at job start Tue Mar 31 2020 18:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00255 * 2 1 4 4 O 1.21277 * 120.00427 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99517 * 359.97438 * 3 2 1 6 6 H 1.09000 * 110.33043 * 30.12815 * 5 3 2 7 7 C 1.54906 * 110.36718 * 267.76556 * 5 3 2 8 8 C 1.55161 * 101.58573 * 204.15422 * 7 5 3 9 9 C 1.54327 * 102.93672 * 35.50281 * 8 7 5 10 10 N 1.47022 * 107.27445 * 337.80919 * 9 8 7 11 11 C 1.34777 * 125.64620 * 178.97844 * 10 9 8 12 12 O 1.21279 * 119.99463 * 174.71080 * 11 10 9 13 13 C 1.50694 * 120.00413 * 354.70855 * 11 10 9 14 14 C 1.53004 * 117.50061 * 248.75262 * 13 11 10 15 15 C 1.52995 * 117.50204 * 180.08923 * 13 11 10 16 16 C 1.46500 * 119.99889 * 179.97438 * 2 1 3 17 17 H 1.09001 * 110.88532 * 183.88920 * 16 2 1 18 18 C 1.55154 * 111.00499 * 60.00634 * 16 2 1 19 19 C 1.54327 * 102.94167 * 277.42455 * 18 16 2 20 20 N 1.47024 * 107.26870 * 337.81181 * 19 18 16 21 21 C 1.36936 * 125.64368 * 178.89803 * 20 19 18 22 22 H 1.08002 * 119.99581 * 180.02562 * 21 20 19 23 23 C 1.38818 * 120.00156 * 0.02562 * 21 20 19 24 24 N 1.31615 * 119.99826 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99702 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47425 * 59.99898 * 25 23 21 27 27 H 1.48507 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47301 * 299.99799 * 25 23 21 29 29 C 1.47421 * 108.70517 * 358.93182 * 20 19 18 30 30 H 1.09012 * 109.46804 * 90.00414 * 1 2 3 31 31 H 1.09001 * 109.47710 * 209.99962 * 1 2 3 32 32 H 1.08996 * 109.47436 * 330.00593 * 1 2 3 33 33 H 1.08993 * 111.00629 * 322.23247 * 7 5 3 34 34 H 1.09008 * 111.00336 * 86.04494 * 7 5 3 35 35 H 1.08998 * 110.71894 * 277.14655 * 8 7 5 36 36 H 1.08992 * 110.72156 * 153.86560 * 8 7 5 37 37 H 1.09002 * 109.88238 * 218.38793 * 9 8 7 38 38 H 1.08999 * 109.88238 * 97.22843 * 9 8 7 39 39 H 1.09006 * 115.54935 * 34.41406 * 13 11 10 40 40 H 1.09007 * 117.49364 * 359.97438 * 14 13 11 41 41 H 1.08991 * 117.50149 * 145.01778 * 14 13 11 42 42 H 1.08999 * 117.49960 * 214.97731 * 15 13 11 43 43 H 1.09002 * 117.49635 * 359.97438 * 15 13 11 44 44 H 1.08999 * 110.71954 * 35.79073 * 18 16 2 45 45 H 1.09005 * 110.71909 * 158.88472 * 18 16 2 46 46 H 1.08995 * 109.87656 * 97.22317 * 19 18 16 47 47 H 1.08998 * 109.88369 * 218.23390 * 19 18 16 48 48 H 0.96996 * 119.99857 * 179.97438 * 24 23 21 49 49 H 1.09002 * 110.37178 * 265.29477 * 29 20 19 50 50 H 1.09007 * 110.36283 * 142.96775 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4722 -0.0006 6 1 0.4302 2.3583 0.5121 7 6 1.1654 2.9671 -1.4519 8 6 0.9927 4.4941 -1.2376 9 6 1.9653 4.7923 -0.0771 10 7 2.1889 3.5289 0.6407 11 6 2.9945 3.3642 1.7086 12 8 3.0303 2.2962 2.2820 13 6 3.8507 4.5070 2.1900 14 6 5.3649 4.3795 2.0116 15 6 4.7450 4.2564 3.4058 16 6 2.1974 -1.2687 0.0006 17 1 3.2717 -1.0972 0.0696 18 6 1.8484 -2.1130 -1.2535 19 6 0.5311 -2.8069 -0.8474 20 7 0.4792 -2.8192 0.6219 21 6 -0.5413 -3.3279 1.3801 22 1 -0.4846 -3.2885 2.4579 23 6 -1.6486 -3.8941 0.7634 24 7 -1.7178 -3.9416 -0.5501 25 14 -3.0409 -4.5874 1.7978 26 1 -3.6135 -3.5094 2.6437 27 1 -4.0973 -5.1301 0.9061 28 1 -2.5193 -5.6734 2.6660 29 6 1.7074 -2.1924 1.1436 30 1 -0.3633 -0.0001 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 2.0357 2.7557 -2.0729 34 1 0.2651 2.5282 -1.8821 35 1 -0.0324 4.7300 -0.9519 36 1 1.2808 5.0443 -2.1333 37 1 1.5250 5.5281 0.5958 38 1 2.9098 5.1666 -0.4719 39 1 3.4132 5.4997 2.0831 40 1 5.7418 3.4686 1.5462 41 1 5.9236 5.2881 1.7877 42 1 4.8963 5.0843 4.0985 43 1 4.7138 3.2650 3.8577 44 1 1.6945 -1.4704 -2.1204 45 1 2.6287 -2.8475 -1.4533 46 1 -0.3183 -2.2505 -1.2437 47 1 0.5165 -3.8275 -1.2298 48 1 -2.4913 -4.3376 -0.9810 49 1 2.4567 -2.9524 1.3649 50 1 1.4848 -1.6067 2.0356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033485857.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:33 Heat of formation + Delta-G solvation = 8.283370 kcal Electronic energy + Delta-G solvation = -31035.871110 eV Core-core repulsion = 27065.609664 eV Total energy + Delta-G solvation = -3970.261446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.76606 -39.24205 -37.92269 -36.88760 -35.93139 -34.15312 -32.23630 -31.72853 -29.92502 -29.07724 -27.67149 -25.88522 -25.34260 -24.37114 -23.09533 -22.55979 -21.93741 -20.60143 -20.02970 -19.14575 -18.25602 -17.53173 -17.41670 -16.88413 -15.89832 -15.80361 -15.13408 -14.88421 -14.71539 -14.62049 -14.33758 -13.85673 -13.71426 -13.49293 -13.46608 -13.00142 -12.68096 -12.51620 -12.31469 -11.94170 -11.91743 -11.76150 -11.70271 -11.67603 -11.59281 -11.37999 -11.05165 -10.92203 -10.86581 -10.74339 -10.65737 -10.60762 -10.19771 -10.15201 -9.88335 -9.73607 -9.62960 -9.36887 -8.66864 -8.58609 -8.06101 -6.79491 -5.73399 -3.07220 2.52565 2.67816 3.10364 3.39573 3.44633 3.45404 3.49655 3.76859 4.19931 4.32645 4.48724 4.60111 4.63980 4.65819 4.75862 4.84853 4.96100 4.98377 5.14481 5.36645 5.43709 5.44455 5.47064 5.47802 5.53443 5.57180 5.61474 5.66279 5.75093 5.80746 5.83174 5.92746 5.95352 6.00835 6.14592 6.16586 6.29127 6.42655 6.59838 6.60302 6.73238 6.86439 7.19321 7.46115 7.55953 7.61327 7.81299 7.95280 8.22893 8.25372 8.63847 9.20354 9.79620 10.45887 11.37507 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.003243 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.161197 B = 8633.006305 C = 8977.200701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.584 5.584 3 C 0.518 3.482 4 O -0.538 6.538 5 C 0.116 3.884 6 H 0.098 0.902 7 C -0.120 4.120 8 C -0.129 4.129 9 C 0.104 3.896 10 N -0.606 5.606 11 C 0.561 3.439 12 O -0.514 6.514 13 C -0.188 4.188 14 C -0.150 4.150 15 C -0.149 4.149 16 C 0.128 3.872 17 H 0.097 0.903 18 C -0.155 4.155 19 C 0.176 3.824 20 N -0.602 5.602 21 C -0.230 4.230 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.125 3.875 30 H 0.050 0.950 31 H 0.124 0.876 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.041 0.959 48 H 0.253 0.747 49 H 0.030 0.970 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 21.267 -1.853 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.316 5.316 3 C 0.304 3.696 4 O -0.415 6.415 5 C 0.009 3.991 6 H 0.115 0.885 7 C -0.158 4.158 8 C -0.167 4.167 9 C -0.019 4.019 10 N -0.342 5.342 11 C 0.350 3.650 12 O -0.389 6.389 13 C -0.209 4.209 14 C -0.187 4.187 15 C -0.186 4.186 16 C 0.023 3.977 17 H 0.115 0.885 18 C -0.195 4.195 19 C 0.051 3.949 20 N -0.329 5.329 21 C -0.358 4.358 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.001 4.001 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.048 0.952 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.766 20.540 -1.492 22.010 hybrid contribution -0.999 -0.353 0.382 1.127 sum 6.766 20.188 -1.110 21.320 Atomic orbital electron populations 1.22302 0.78749 1.05310 1.01974 1.47575 1.07433 1.04957 1.71598 1.20188 0.87942 0.84971 0.76515 1.90623 1.13774 1.87023 1.50124 1.21946 0.94752 0.87428 0.94949 0.88480 1.22718 1.03763 0.95445 0.93876 1.22639 0.99896 0.96017 0.98165 1.22015 0.99630 0.86264 0.93973 1.48159 1.46015 1.09531 1.30527 1.19223 0.78696 0.88442 0.78664 1.90757 1.65171 1.27516 1.55408 1.22104 0.93588 0.98612 1.06570 1.22939 0.91633 1.04020 1.00150 1.22966 1.00803 1.04310 0.90570 1.22175 0.96148 0.82465 0.96886 0.88538 1.23251 1.00854 0.98665 0.96687 1.21205 0.91516 0.98384 0.83751 1.44601 1.17296 1.69189 1.01858 1.19012 0.95109 1.31917 0.89789 0.90513 1.24773 0.98472 1.01125 0.95814 1.69957 1.30110 1.49891 1.06829 0.86223 0.81771 0.78953 0.78948 1.21169 1.21654 1.21231 1.21885 0.89963 0.93410 0.94874 0.93157 0.85771 0.92992 0.89919 0.88833 0.90061 0.89509 0.91219 0.91196 0.86288 0.87956 0.87992 0.88056 0.87359 0.92077 0.91546 0.93162 0.94050 0.93714 0.95230 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 8.52 59.84 0.51 1.57 16 2 N -0.58 -10.98 2.91 -171.48 -0.50 -11.48 16 3 C 0.52 9.50 5.64 -10.99 -0.06 9.44 16 4 O -0.54 -11.50 14.33 -15.24 -0.22 -11.72 16 5 C 0.12 1.63 2.93 -67.57 -0.20 1.43 16 6 H 0.10 1.33 5.91 -51.93 -0.31 1.02 16 7 C -0.12 -1.22 6.49 -24.58 -0.16 -1.38 16 8 C -0.13 -0.91 6.95 -24.89 -0.17 -1.08 16 9 C 0.10 0.88 6.24 -3.06 -0.02 0.86 16 10 N -0.61 -8.05 3.12 -164.35 -0.51 -8.57 16 11 C 0.56 8.68 6.81 -10.99 -0.07 8.60 16 12 O -0.51 -10.39 14.42 -15.24 -0.22 -10.61 16 13 C -0.19 -2.07 5.57 -91.77 -0.51 -2.58 16 14 C -0.15 -1.51 10.24 -26.69 -0.27 -1.78 16 15 C -0.15 -1.55 10.05 -26.69 -0.27 -1.81 16 16 C 0.13 2.56 3.66 -65.78 -0.24 2.31 16 17 H 0.10 1.98 7.02 -51.93 -0.36 1.62 16 18 C -0.16 -3.04 6.48 -24.90 -0.16 -3.20 16 19 C 0.18 4.15 4.33 -3.06 -0.01 4.14 16 20 N -0.60 -14.98 1.88 -170.07 -0.32 -15.30 16 21 C -0.23 -6.24 9.79 -15.06 -0.15 -6.38 16 22 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 24 N -0.92 -25.98 10.31 55.49 0.57 -25.41 16 25 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 C 0.13 2.77 6.40 -2.53 -0.02 2.76 16 30 H 0.05 0.84 7.90 -51.92 -0.41 0.43 16 31 H 0.12 2.73 4.73 -51.93 -0.25 2.49 16 32 H 0.05 0.80 5.80 -51.93 -0.30 0.50 16 33 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 34 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 0.97 7.75 -51.93 -0.40 0.56 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.11 1.37 7.67 -51.93 -0.40 0.97 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.05 1.26 6.34 -51.93 -0.33 0.93 16 47 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -34.21 385.93 -10.49 -44.70 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.19 Total: 3.26 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -1.90 Total: 12.64 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.76 Total: -60.76 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.44 Total: -22.33 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.21 -10.49 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033485857.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.987 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds