Wall clock time and date at job start Tue Mar 31 2020 18:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00255 * 2 1 4 4 O 1.21277 * 120.00427 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99517 * 359.97438 * 3 2 1 6 6 H 1.09000 * 110.33043 * 30.12815 * 5 3 2 7 7 C 1.54906 * 110.36718 * 267.76556 * 5 3 2 8 8 C 1.55161 * 101.58573 * 204.15422 * 7 5 3 9 9 C 1.54327 * 102.93672 * 35.50281 * 8 7 5 10 10 N 1.47022 * 107.27445 * 337.80919 * 9 8 7 11 11 C 1.34777 * 125.64620 * 178.97844 * 10 9 8 12 12 O 1.21279 * 119.99463 * 174.71080 * 11 10 9 13 13 C 1.50694 * 120.00413 * 354.70855 * 11 10 9 14 14 C 1.53004 * 117.50061 * 248.75262 * 13 11 10 15 15 C 1.52995 * 117.50204 * 180.08923 * 13 11 10 16 16 C 1.46500 * 119.99889 * 179.97438 * 2 1 3 17 17 H 1.09001 * 110.88532 * 183.88920 * 16 2 1 18 18 C 1.55154 * 111.00499 * 60.00634 * 16 2 1 19 19 C 1.54327 * 102.94167 * 277.42455 * 18 16 2 20 20 N 1.47024 * 107.26870 * 337.81181 * 19 18 16 21 21 C 1.36936 * 125.64368 * 178.89803 * 20 19 18 22 22 H 1.08002 * 119.99581 * 180.02562 * 21 20 19 23 23 C 1.38818 * 120.00156 * 0.02562 * 21 20 19 24 24 N 1.31615 * 119.99826 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99702 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47425 * 59.99898 * 25 23 21 27 27 H 1.48507 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47301 * 299.99799 * 25 23 21 29 29 C 1.47421 * 108.70517 * 358.93182 * 20 19 18 30 30 H 1.09012 * 109.46804 * 90.00414 * 1 2 3 31 31 H 1.09001 * 109.47710 * 209.99962 * 1 2 3 32 32 H 1.08996 * 109.47436 * 330.00593 * 1 2 3 33 33 H 1.08993 * 111.00629 * 322.23247 * 7 5 3 34 34 H 1.09008 * 111.00336 * 86.04494 * 7 5 3 35 35 H 1.08998 * 110.71894 * 277.14655 * 8 7 5 36 36 H 1.08992 * 110.72156 * 153.86560 * 8 7 5 37 37 H 1.09002 * 109.88238 * 218.38793 * 9 8 7 38 38 H 1.08999 * 109.88238 * 97.22843 * 9 8 7 39 39 H 1.09006 * 115.54935 * 34.41406 * 13 11 10 40 40 H 1.09007 * 117.49364 * 359.97438 * 14 13 11 41 41 H 1.08991 * 117.50149 * 145.01778 * 14 13 11 42 42 H 1.08999 * 117.49960 * 214.97731 * 15 13 11 43 43 H 1.09002 * 117.49635 * 359.97438 * 15 13 11 44 44 H 1.08999 * 110.71954 * 35.79073 * 18 16 2 45 45 H 1.09005 * 110.71909 * 158.88472 * 18 16 2 46 46 H 1.08995 * 109.87656 * 97.22317 * 19 18 16 47 47 H 1.08998 * 109.88369 * 218.23390 * 19 18 16 48 48 H 0.96996 * 119.99857 * 179.97438 * 24 23 21 49 49 H 1.09002 * 110.37178 * 265.29477 * 29 20 19 50 50 H 1.09007 * 110.36283 * 142.96775 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4722 -0.0006 6 1 0.4302 2.3583 0.5121 7 6 1.1654 2.9671 -1.4519 8 6 0.9927 4.4941 -1.2376 9 6 1.9653 4.7923 -0.0771 10 7 2.1889 3.5289 0.6407 11 6 2.9945 3.3642 1.7086 12 8 3.0303 2.2962 2.2820 13 6 3.8507 4.5070 2.1900 14 6 5.3649 4.3795 2.0116 15 6 4.7450 4.2564 3.4058 16 6 2.1974 -1.2687 0.0006 17 1 3.2717 -1.0972 0.0696 18 6 1.8484 -2.1130 -1.2535 19 6 0.5311 -2.8069 -0.8474 20 7 0.4792 -2.8192 0.6219 21 6 -0.5413 -3.3279 1.3801 22 1 -0.4846 -3.2885 2.4579 23 6 -1.6486 -3.8941 0.7634 24 7 -1.7178 -3.9416 -0.5501 25 14 -3.0409 -4.5874 1.7978 26 1 -3.6135 -3.5094 2.6437 27 1 -4.0973 -5.1301 0.9061 28 1 -2.5193 -5.6734 2.6660 29 6 1.7074 -2.1924 1.1436 30 1 -0.3633 -0.0001 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 2.0357 2.7557 -2.0729 34 1 0.2651 2.5282 -1.8821 35 1 -0.0324 4.7300 -0.9519 36 1 1.2808 5.0443 -2.1333 37 1 1.5250 5.5281 0.5958 38 1 2.9098 5.1666 -0.4719 39 1 3.4132 5.4997 2.0831 40 1 5.7418 3.4686 1.5462 41 1 5.9236 5.2881 1.7877 42 1 4.8963 5.0843 4.0985 43 1 4.7138 3.2650 3.8577 44 1 1.6945 -1.4704 -2.1204 45 1 2.6287 -2.8475 -1.4533 46 1 -0.3183 -2.2505 -1.2437 47 1 0.5165 -3.8275 -1.2298 48 1 -2.4913 -4.3376 -0.9810 49 1 2.4567 -2.9524 1.3649 50 1 1.4848 -1.6067 2.0356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033485857.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:32 Heat of formation + Delta-G solvation = -11.692840 kcal Electronic energy + Delta-G solvation = -31036.737343 eV Core-core repulsion = 27065.609664 eV Total energy + Delta-G solvation = -3971.127679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95148 -40.62627 -39.22022 -38.22655 -36.92149 -35.85418 -34.10402 -32.68019 -31.42985 -30.52425 -29.35859 -27.51638 -26.36906 -26.15577 -24.21788 -23.35941 -22.81000 -21.96625 -21.80071 -20.44852 -19.48508 -18.95896 -18.78849 -18.41856 -17.29822 -16.93013 -16.64702 -16.39753 -16.10773 -15.73417 -15.61606 -15.30182 -15.23853 -14.57736 -14.49659 -14.37225 -13.98742 -13.84845 -13.63397 -13.48863 -13.43513 -13.30588 -13.01259 -12.85471 -12.77902 -12.69710 -12.48524 -12.35769 -12.24543 -12.07194 -11.98081 -11.82908 -11.72066 -11.56893 -11.53093 -11.46081 -10.89534 -10.77528 -10.71808 -9.68372 -9.65860 -8.81544 -7.83941 -5.19785 1.39018 1.47921 1.49705 1.56137 1.56881 1.87982 2.13467 2.49562 2.91968 3.27714 3.34976 3.50300 3.61720 3.69955 3.73624 3.84479 3.86077 3.91142 3.96295 3.98561 4.13613 4.20477 4.26151 4.39112 4.46180 4.59473 4.64416 4.67548 4.69948 4.74623 4.80686 4.82131 4.83357 4.89623 4.93273 4.99349 5.00046 5.07276 5.18602 5.20245 5.25350 5.32821 5.45348 5.58402 5.66299 5.77890 6.17845 6.43365 6.51181 7.10787 7.11204 7.24110 7.74067 8.39931 9.25293 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.003243 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.161197 B = 8633.006305 C = 8977.200701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.589 5.589 3 C 0.512 3.488 4 O -0.574 6.574 5 C 0.111 3.889 6 H 0.100 0.900 7 C -0.116 4.116 8 C -0.116 4.116 9 C 0.094 3.906 10 N -0.608 5.608 11 C 0.544 3.456 12 O -0.580 6.580 13 C -0.188 4.188 14 C -0.141 4.141 15 C -0.152 4.152 16 C 0.136 3.864 17 H 0.092 0.908 18 C -0.138 4.138 19 C 0.190 3.810 20 N -0.612 5.612 21 C -0.245 4.245 22 H 0.074 0.926 23 C -0.051 4.051 24 N -0.942 5.942 25 Si 0.974 3.026 26 H -0.277 1.277 27 H -0.292 1.292 28 H -0.284 1.284 29 C 0.128 3.872 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.159 0.841 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.008 0.992 48 H 0.249 0.751 49 H 0.032 0.968 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 24.779 -2.514 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.321 5.321 3 C 0.301 3.699 4 O -0.453 6.453 5 C 0.004 3.996 6 H 0.118 0.882 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.027 4.027 10 N -0.343 5.343 11 C 0.335 3.665 12 O -0.459 6.459 13 C -0.208 4.208 14 C -0.178 4.178 15 C -0.190 4.190 16 C 0.031 3.969 17 H 0.110 0.890 18 C -0.177 4.177 19 C 0.066 3.934 20 N -0.339 5.339 21 C -0.374 4.374 22 H 0.091 0.909 23 C -0.245 4.245 24 N -0.590 5.590 25 Si 0.802 3.198 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.211 1.211 29 C 0.002 3.998 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.088 0.912 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.051 0.949 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.050 0.950 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.283 24.108 -2.177 25.278 hybrid contribution -0.813 -1.455 0.613 1.776 sum 6.470 22.652 -1.564 23.610 Atomic orbital electron populations 1.22146 0.78143 1.04497 1.02458 1.47658 1.07737 1.04850 1.71844 1.21015 0.87822 0.86066 0.75026 1.90595 1.15504 1.87622 1.51575 1.22087 0.94044 0.85638 0.97827 0.88219 1.22765 1.03824 0.98065 0.90753 1.22694 1.00676 0.93274 0.98689 1.22417 1.01062 0.84485 0.94703 1.48403 1.44927 1.11030 1.29910 1.20117 0.78932 0.88802 0.78643 1.90719 1.67308 1.30227 1.57658 1.22226 0.93383 0.98524 1.06677 1.22978 0.91232 1.04223 0.99399 1.23010 1.00953 1.03783 0.91212 1.21954 0.95950 0.83029 0.95977 0.89021 1.23109 0.98957 0.98707 0.96915 1.20940 0.92987 0.96500 0.82990 1.44719 1.17621 1.69152 1.02417 1.19258 0.96041 1.32040 0.90036 0.90857 1.25483 1.00503 1.01597 0.96911 1.70137 1.30406 1.50425 1.08039 0.85236 0.78833 0.78237 0.77463 1.20293 1.21748 1.21075 1.21889 0.89154 0.93588 0.95181 0.91944 0.89677 0.90580 0.91173 0.87452 0.88255 0.86844 0.88494 0.89902 0.82345 0.91243 0.84119 0.84576 0.90868 0.90310 0.90158 0.94896 0.97400 0.94182 0.95039 0.95110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.53 8.52 127.77 1.09 3.61 16 2 N -0.59 -22.53 2.91 -814.83 -2.37 -24.90 16 3 C 0.51 19.02 5.64 87.66 0.49 19.52 16 4 O -0.57 -25.26 14.33 16.87 0.24 -25.01 16 5 C 0.11 2.99 2.93 44.72 0.13 3.12 16 6 H 0.10 2.61 5.91 -2.39 -0.01 2.60 16 7 C -0.12 -2.07 6.49 31.99 0.21 -1.86 16 8 C -0.12 -1.12 6.95 31.79 0.22 -0.90 16 9 C 0.09 1.22 6.24 86.73 0.54 1.76 16 10 N -0.61 -15.21 3.12 -792.27 -2.47 -17.68 16 11 C 0.54 16.75 6.81 87.66 0.60 17.35 16 12 O -0.58 -24.59 14.42 16.86 0.24 -24.35 16 13 C -0.19 -3.78 5.57 -11.54 -0.06 -3.85 16 14 C -0.14 -2.62 10.24 30.62 0.31 -2.31 16 15 C -0.15 -3.01 10.05 30.62 0.31 -2.70 16 16 C 0.14 5.58 3.66 46.38 0.17 5.75 16 17 H 0.09 3.89 7.02 -2.39 -0.02 3.87 16 18 C -0.14 -5.42 6.48 31.78 0.21 -5.21 16 19 C 0.19 9.24 4.33 86.73 0.38 9.62 16 20 N -0.61 -31.48 1.88 -691.98 -1.30 -32.77 16 21 C -0.25 -13.65 9.79 84.03 0.82 -12.83 16 22 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 23 C -0.05 -2.82 5.49 84.86 0.47 -2.35 16 24 N -0.94 -54.30 10.31 21.65 0.22 -54.07 16 25 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 29 C 0.13 5.89 6.40 86.86 0.56 6.45 16 30 H 0.06 2.07 7.90 -2.38 -0.02 2.05 16 31 H 0.08 3.84 4.73 -2.39 -0.01 3.83 16 32 H 0.08 2.32 5.80 -2.39 -0.01 2.30 16 33 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 34 H 0.11 1.62 8.14 -2.38 -0.02 1.61 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.16 1.88 7.75 -2.38 -0.02 1.86 16 40 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.98 7.67 -2.39 -0.02 1.96 16 44 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 46 H 0.03 1.70 6.34 -2.39 -0.02 1.69 16 47 H 0.01 0.43 7.51 -2.39 -0.02 0.41 16 48 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 49 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -79.99 385.93 3.96 -76.03 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.93 Total: 20.45 kcal Atomic # 6 Polarization: 28.74 SS G_CDS: 6.43 Total: 35.17 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -5.92 Total: -129.43 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: 0.48 Total: -49.36 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -79.99 3.96 -76.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033485857.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.341 kcal (2) G-P(sol) polarization free energy of solvation -79.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds