Wall clock time and date at job start Tue Mar 31 2020 18:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00255 * 2 1 4 4 C 1.46900 * 110.99656 * 123.95401 * 2 1 3 5 5 C 1.50703 * 109.46880 * 164.24435 * 4 2 1 6 6 C 1.40368 * 126.64037 * 105.59827 * 5 4 2 7 7 C 1.35133 * 107.10921 * 179.83869 * 6 5 4 8 8 O 1.33922 * 108.77006 * 0.43434 * 7 6 5 9 9 C 1.34917 * 109.38716 * 359.72166 * 8 7 6 10 10 C 1.46647 * 125.99089 * 179.97438 * 9 8 7 11 11 O 1.21697 * 120.00022 * 185.21654 * 10 9 8 12 12 N 1.34781 * 120.00364 * 5.20991 * 10 9 8 13 13 C 1.46494 * 120.00250 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.36706 * 35.00476 * 13 12 10 15 15 C 1.50882 * 109.36484 * 154.75153 * 13 12 10 16 16 C 1.52733 * 109.27357 * 212.17959 * 15 13 12 17 17 C 1.47094 * 114.22485 * 274.83192 * 16 15 13 18 18 C 1.54862 * 110.32350 * 62.83206 * 17 16 15 19 19 N 1.44577 * 109.60292 * 288.73284 * 18 17 16 20 20 C 1.36940 * 118.64331 * 270.70900 * 19 18 17 21 21 H 1.08000 * 119.99842 * 183.64869 * 20 19 18 22 22 C 1.38809 * 120.00068 * 3.64148 * 20 19 18 23 23 N 1.31622 * 120.00269 * 29.26377 * 22 20 19 24 24 Si 1.86806 * 120.00218 * 209.26424 * 22 20 19 25 25 H 1.48501 * 109.46882 * 94.99066 * 24 22 20 26 26 H 1.48500 * 109.47337 * 214.98793 * 24 22 20 27 27 H 1.48496 * 109.46819 * 334.99074 * 24 22 20 28 28 C 1.47603 * 122.71379 * 90.72594 * 19 18 17 29 29 H 1.08998 * 109.47133 * 296.04609 * 1 2 3 30 30 H 1.09003 * 109.46921 * 56.04347 * 1 2 3 31 31 H 1.08999 * 109.47703 * 176.04701 * 1 2 3 32 32 H 1.09002 * 109.47239 * 189.74541 * 3 2 1 33 33 H 1.09009 * 109.47127 * 309.74563 * 3 2 1 34 34 H 1.09001 * 109.47565 * 69.74344 * 3 2 1 35 35 H 1.09001 * 109.47106 * 44.24938 * 4 2 1 36 36 H 1.09001 * 109.47279 * 284.24854 * 4 2 1 37 37 H 1.07994 * 126.44619 * 0.02562 * 6 5 4 38 38 H 1.08005 * 125.61368 * 180.16228 * 7 6 5 39 39 H 0.97003 * 119.99344 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.49129 * 332.04361 * 15 13 12 41 41 H 1.09004 * 109.49409 * 92.11422 * 15 13 12 42 42 H 1.08994 * 108.53627 * 153.62198 * 16 15 13 43 43 H 1.09001 * 108.46270 * 35.98092 * 16 15 13 44 44 H 1.08998 * 109.32756 * 302.56732 * 17 16 15 45 45 H 1.09005 * 109.18390 * 183.00307 * 17 16 15 46 46 H 1.09001 * 109.44764 * 168.69552 * 18 17 16 47 47 H 1.08997 * 109.45139 * 48.76963 * 18 17 16 48 48 H 0.96991 * 120.00777 * 179.97438 * 23 22 20 49 49 H 1.09001 * 108.94605 * 197.18724 * 28 19 18 50 50 H 1.09001 * 108.94581 * 78.55706 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4520 -1.0743 0.9047 6 6 4.5483 -0.4662 1.5361 7 6 5.6643 -1.0419 1.0366 8 8 5.3066 -1.9598 0.1294 9 6 3.9612 -1.9948 0.0342 10 6 3.1823 -2.8681 -0.8496 11 8 1.9736 -2.7435 -0.9171 12 7 3.8049 -3.8087 -1.5873 13 6 3.0267 -4.6814 -2.4698 14 1 2.1913 -4.1202 -2.8881 15 6 3.9088 -5.1751 -3.5899 16 6 3.0662 -5.3627 -4.8499 17 6 2.3883 -6.6654 -4.9342 18 6 1.3790 -6.8229 -3.7703 19 7 2.0959 -7.0034 -2.5278 20 6 2.4260 -8.2743 -2.1391 21 1 2.9089 -8.4396 -1.1873 22 6 2.1399 -9.3501 -2.9683 23 7 2.1073 -9.1845 -4.2736 24 14 1.8011 -11.0331 -2.2316 25 1 0.3361 -11.2192 -2.0755 26 1 2.3406 -12.0847 -3.1306 27 1 2.4572 -11.1330 -0.9032 28 6 2.4862 -5.8745 -1.6607 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0713 1.3475 -0.1740 33 1 1.5123 1.9461 -0.7902 34 1 1.7936 1.8381 0.9641 35 1 1.4383 -1.6976 1.2373 36 1 1.8894 -0.1799 2.0505 37 1 4.5076 0.3128 2.2829 38 1 6.6779 -0.7984 1.3191 39 1 4.7684 -3.9082 -1.5333 40 1 4.6938 -4.4442 -3.7838 41 1 4.3592 -6.1263 -3.3060 42 1 3.7139 -5.2526 -5.7195 43 1 2.3112 -4.5771 -4.8803 44 1 3.1300 -7.4622 -4.8790 45 1 1.8572 -6.7320 -5.8838 46 1 0.7463 -7.6913 -3.9536 47 1 0.7584 -5.9293 -3.7046 48 1 1.9078 -9.9363 -4.8531 49 1 3.2574 -6.2107 -0.9677 50 1 1.6165 -5.5498 -1.0895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034363521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:46 Heat of formation + Delta-G solvation = 26.177238 kcal Electronic energy + Delta-G solvation = -30373.487283 eV Core-core repulsion = 26404.001773 eV Total energy + Delta-G solvation = -3969.485509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.79525 -39.41687 -37.71016 -37.31307 -34.63645 -33.41016 -32.97125 -31.28016 -30.45034 -29.31171 -27.60313 -27.26630 -26.05414 -24.30521 -23.54001 -22.48881 -22.13186 -21.14153 -20.11894 -19.38719 -19.11812 -17.97094 -16.55250 -16.47303 -16.18737 -15.78297 -15.25259 -15.22752 -15.02898 -14.62550 -14.47014 -14.11458 -13.66647 -13.54698 -13.45798 -13.18692 -13.06524 -12.64304 -12.54278 -12.30079 -12.03854 -11.96056 -11.84792 -11.68239 -11.54337 -11.41023 -11.07495 -10.93552 -10.61980 -10.28107 -10.15696 -10.00709 -9.91226 -9.73420 -9.67271 -9.45881 -9.19980 -8.80215 -8.54037 -8.33650 -8.17221 -6.81943 -5.70830 -2.98519 1.07521 2.20402 2.67961 3.35729 3.43917 3.47077 3.52696 3.54439 4.03650 4.55206 4.57116 4.62669 4.88855 5.08868 5.15517 5.25198 5.31707 5.33619 5.40450 5.46008 5.51585 5.57774 5.62489 5.71176 5.75412 5.82025 5.83282 5.86628 5.96522 6.15249 6.15331 6.19065 6.31771 6.54604 6.59151 6.69653 6.76157 6.86547 6.92622 6.97623 7.02029 7.03726 7.17848 7.27328 7.35067 7.74623 7.79575 7.85992 8.24829 8.39010 8.44037 9.33166 9.95874 10.35813 11.28958 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.002922 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.644029 B = 9579.624711 C = 9780.139045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.528 5.528 3 C 0.025 3.975 4 C 0.126 3.874 5 C -0.096 4.096 6 C -0.220 4.220 7 C -0.015 4.015 8 O -0.164 6.164 9 C -0.046 4.046 10 C 0.595 3.405 11 O -0.497 6.497 12 N -0.713 5.713 13 C 0.131 3.869 14 H 0.083 0.917 15 C -0.114 4.114 16 C -0.103 4.103 17 C -0.125 4.125 18 C 0.181 3.819 19 N -0.593 5.593 20 C -0.254 4.254 21 H 0.072 0.928 22 C 0.001 3.999 23 N -0.888 5.888 24 Si 0.888 3.112 25 H -0.290 1.290 26 H -0.295 1.295 27 H -0.282 1.282 28 C 0.147 3.853 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.151 0.849 38 H 0.207 0.793 39 H 0.399 0.601 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.102 0.898 45 H 0.032 0.968 46 H 0.078 0.922 47 H 0.004 0.996 48 H 0.250 0.750 49 H 0.049 0.951 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 19.917 8.561 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.252 5.252 3 C -0.123 4.123 4 C -0.002 4.002 5 C -0.100 4.100 6 C -0.239 4.239 7 C -0.085 4.085 8 O -0.059 6.059 9 C -0.100 4.100 10 C 0.380 3.620 11 O -0.372 6.372 12 N -0.364 5.364 13 C 0.026 3.974 14 H 0.101 0.899 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.165 4.165 18 C 0.055 3.945 19 N -0.315 5.315 20 C -0.383 4.383 21 H 0.090 0.910 22 C -0.197 4.197 23 N -0.534 5.534 24 Si 0.718 3.282 25 H -0.217 1.217 26 H -0.222 1.222 27 H -0.208 1.208 28 C 0.019 3.981 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.169 0.831 38 H 0.223 0.777 39 H 0.233 0.767 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.120 0.880 45 H 0.051 0.949 46 H 0.096 0.904 47 H 0.022 0.978 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.549 19.466 7.758 21.443 hybrid contribution 0.283 -0.267 1.248 1.307 sum 4.832 19.199 9.006 21.750 Atomic orbital electron populations 1.22339 0.86689 1.02980 0.99662 1.61776 1.07986 1.12789 1.42628 1.22413 1.01023 0.89128 0.99731 1.20442 0.89725 0.99090 0.90930 1.20347 0.96470 0.96164 0.96984 1.21673 0.91631 1.04983 1.05642 1.24236 1.00325 0.91674 0.92266 1.84085 1.22863 1.49342 1.49608 1.22211 0.79944 1.03781 1.04032 1.16518 0.86526 0.79539 0.79463 1.90893 1.11990 1.69756 1.64601 1.46211 1.11082 1.34809 1.44284 1.21661 0.94137 0.91316 0.90291 0.89939 1.21297 0.97487 1.01460 0.94920 1.20480 0.98011 1.00130 0.95484 1.21422 1.01423 0.95608 0.98013 1.20746 0.92495 0.97373 0.83848 1.43992 1.63958 1.01396 1.22156 1.19342 1.35252 0.82687 1.00996 0.90965 1.24641 1.02656 0.97419 0.94961 1.70336 1.51682 1.30031 1.01375 0.86467 0.78440 0.84699 0.78562 1.21739 1.22215 1.20772 1.21482 0.97013 0.87088 0.92505 0.96283 0.91556 0.90566 0.91664 0.91676 0.96058 0.88843 0.94157 0.83147 0.77655 0.76719 0.93311 0.90017 0.94263 0.94359 0.87962 0.94912 0.90357 0.97765 0.93937 0.93288 0.95873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.53 60.07 0.57 0.92 16 2 N -0.53 -6.60 4.55 -252.72 -1.15 -7.75 16 3 C 0.03 0.26 9.40 60.06 0.56 0.82 16 4 C 0.13 1.53 4.50 -4.97 -0.02 1.51 16 5 C -0.10 -1.20 4.95 -104.43 -0.52 -1.71 16 6 C -0.22 -2.08 10.82 -39.89 -0.43 -2.51 16 7 C -0.02 -0.13 12.08 29.63 0.36 0.22 16 8 O -0.16 -1.95 10.41 5.01 0.05 -1.89 16 9 C -0.05 -0.65 7.12 -36.80 -0.26 -0.91 16 10 C 0.59 9.72 7.74 -12.86 -0.10 9.63 16 11 O -0.50 -9.36 14.55 5.19 0.08 -9.28 16 12 N -0.71 -11.17 4.97 -55.68 -0.28 -11.45 16 13 C 0.13 2.40 2.27 -68.50 -0.16 2.24 16 14 H 0.08 1.65 6.73 -51.93 -0.35 1.30 16 15 C -0.11 -2.04 5.07 -27.93 -0.14 -2.19 16 16 C -0.10 -1.96 5.17 -29.70 -0.15 -2.11 16 17 C -0.12 -2.79 4.80 -28.58 -0.14 -2.93 16 18 C 0.18 4.38 4.96 -4.09 -0.02 4.36 16 19 N -0.59 -14.56 2.29 -172.09 -0.39 -14.95 16 20 C -0.25 -6.80 9.57 -15.06 -0.14 -6.95 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C 0.00 0.02 4.79 -17.43 -0.08 -0.07 16 23 N -0.89 -24.25 8.25 55.49 0.46 -23.79 16 24 Si 0.89 21.48 29.64 -169.99 -5.04 16.44 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.15 3.13 5.83 -2.94 -0.02 3.11 16 29 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 33 H 0.06 0.60 8.02 -51.92 -0.42 0.18 16 34 H 0.02 0.19 8.00 -51.93 -0.42 -0.23 16 35 H 0.09 1.28 7.30 -51.93 -0.38 0.90 16 36 H 0.04 0.42 7.95 -51.93 -0.41 0.00 16 37 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.21 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.40 5.40 8.31 -40.82 -0.34 5.06 16 40 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 41 H 0.08 1.67 7.48 -51.93 -0.39 1.29 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.71 7.35 -51.93 -0.38 0.33 16 44 H 0.10 2.63 6.33 -51.93 -0.33 2.30 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 2.11 5.97 -51.93 -0.31 1.80 16 47 H 0.00 0.09 8.06 -51.93 -0.42 -0.32 16 48 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 49 H 0.05 1.04 7.77 -51.93 -0.40 0.63 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -29.88 390.39 -9.36 -39.24 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.27 Total: 4.13 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.69 Total: 3.42 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -1.36 Total: -57.94 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.13 Total: -11.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.04 Total: 16.44 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.88 -9.36 -39.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034363521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.416 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds