Wall clock time and date at job start Tue Mar 31 2020 18:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00210 * 2 1 4 4 C 1.46895 * 110.99811 * 123.95437 * 2 1 3 5 5 C 1.50701 * 109.47120 * 169.13595 * 4 2 1 6 6 C 1.40368 * 126.64339 * 100.48114 * 5 4 2 7 7 C 1.35133 * 107.11176 * 179.97438 * 6 5 4 8 8 O 1.33932 * 108.77089 * 359.75252 * 7 6 5 9 9 C 1.34918 * 109.37887 * 0.40451 * 8 7 6 10 10 C 1.46660 * 125.98329 * 179.86052 * 9 8 7 11 11 O 1.21695 * 119.99850 * 174.50196 * 10 9 8 12 12 N 1.34771 * 120.00182 * 354.49456 * 10 9 8 13 13 C 1.46501 * 120.00205 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.24444 * 324.66265 * 13 12 10 15 15 C 1.54841 * 109.36073 * 205.00112 * 13 12 10 16 16 C 1.50126 * 110.81657 * 200.92737 * 15 13 12 17 17 C 1.52526 * 105.41413 * 97.68906 * 16 15 13 18 18 C 1.46246 * 114.27269 * 270.59181 * 17 16 15 19 19 N 1.50166 * 107.53280 * 58.40871 * 18 17 16 20 20 C 1.36939 * 120.53749 * 109.56457 * 19 18 17 21 21 H 1.07993 * 119.99981 * 171.97947 * 20 19 18 22 22 C 1.38811 * 119.99924 * 351.97869 * 20 19 18 23 23 N 1.31619 * 120.00057 * 317.90141 * 22 20 19 24 24 Si 1.86795 * 120.00206 * 137.90168 * 22 20 19 25 25 H 1.48496 * 109.47419 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47111 * 59.99539 * 24 22 20 27 27 H 1.48500 * 109.47155 * 300.00296 * 24 22 20 28 28 C 1.43433 * 118.92764 * 289.83865 * 19 18 17 29 29 H 1.09005 * 109.47115 * 296.04952 * 1 2 3 30 30 H 1.09004 * 109.46809 * 56.04480 * 1 2 3 31 31 H 1.08997 * 109.47622 * 176.04925 * 1 2 3 32 32 H 1.09003 * 109.46996 * 189.53409 * 3 2 1 33 33 H 1.09007 * 109.47039 * 309.52558 * 3 2 1 34 34 H 1.08994 * 109.47101 * 69.52991 * 3 2 1 35 35 H 1.09003 * 109.47463 * 49.13649 * 4 2 1 36 36 H 1.09005 * 109.47253 * 289.13900 * 4 2 1 37 37 H 1.08001 * 126.44406 * 359.97438 * 6 5 4 38 38 H 1.08002 * 125.61168 * 180.02562 * 7 6 5 39 39 H 0.97002 * 120.00226 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.20636 * 80.58565 * 15 13 12 41 41 H 1.08996 * 109.21245 * 321.27487 * 15 13 12 42 42 H 1.08999 * 110.24755 * 338.71138 * 16 15 13 43 43 H 1.09006 * 110.36810 * 216.72082 * 16 15 13 44 44 H 1.08996 * 108.52408 * 149.35408 * 17 16 15 45 45 H 1.08998 * 108.39870 * 31.74338 * 17 16 15 46 46 H 1.08996 * 109.84501 * 298.90081 * 18 17 16 47 47 H 1.09000 * 109.89699 * 177.94899 * 18 17 16 48 48 H 0.97006 * 119.99880 * 353.77202 * 23 22 20 49 49 H 1.08997 * 108.16102 * 213.02956 * 28 19 18 50 50 H 1.09000 * 108.16057 * 329.60175 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4781 -0.9708 0.9622 6 6 4.5039 -0.2441 1.5869 7 6 5.6761 -0.7547 1.1495 8 8 5.4190 -1.7555 0.2973 9 6 4.0840 -1.8995 0.1655 10 6 3.4030 -2.8850 -0.6805 11 8 2.1908 -2.9859 -0.6420 12 7 4.1195 -3.6788 -1.5008 13 6 3.4392 -4.6637 -2.3455 14 1 2.5798 -5.0650 -1.8086 15 6 4.4182 -5.8153 -2.6814 16 6 3.9696 -6.5563 -3.9076 17 6 4.7840 -5.9700 -5.0562 18 6 4.1631 -4.8161 -5.7057 19 7 3.9546 -3.7636 -4.6552 20 6 4.7056 -2.6185 -4.6589 21 1 4.4639 -1.8121 -3.9825 22 6 5.7775 -2.4943 -5.5320 23 7 6.5911 -3.5109 -5.7240 24 14 6.0654 -0.8844 -6.4346 25 1 7.2651 -1.0100 -7.3006 26 1 6.2781 0.2050 -5.4480 27 1 4.8812 -0.5684 -7.2730 28 6 2.9602 -3.9797 -3.6443 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0719 1.3473 -0.1702 33 1 1.5151 1.9450 -0.7927 34 1 1.7902 1.8394 0.9627 35 1 1.4979 -1.7347 1.1847 36 1 1.8111 -0.2175 2.0614 37 1 4.3796 0.5699 2.2857 38 1 6.6584 -0.4149 1.4426 39 1 5.0857 -3.5986 -1.5314 40 1 4.4606 -6.5069 -1.8399 41 1 5.4117 -5.4022 -2.8555 42 1 2.9054 -6.3940 -4.0782 43 1 4.1763 -7.6216 -3.8039 44 1 4.9371 -6.7476 -5.8045 45 1 5.7568 -5.6673 -4.6688 46 1 3.2040 -5.1052 -6.1355 47 1 4.8186 -4.4335 -6.4880 48 1 6.4968 -4.3152 -5.1899 49 1 2.5330 -3.0135 -3.3760 50 1 2.1652 -4.5888 -4.0745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034363522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:49 Heat of formation + Delta-G solvation = 23.603216 kcal Electronic energy + Delta-G solvation = -31121.348045 eV Core-core repulsion = 27151.750918 eV Total energy + Delta-G solvation = -3969.597127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.59235 -39.31072 -37.86942 -37.30663 -34.44553 -33.36096 -33.03242 -31.20276 -30.47518 -29.54720 -27.47643 -27.20150 -25.94876 -24.33919 -23.21090 -22.45295 -21.99391 -21.04212 -20.31887 -19.43626 -19.13539 -17.81830 -17.02117 -16.27910 -16.04243 -15.67336 -15.12741 -15.11290 -15.03315 -14.63587 -14.40465 -14.17824 -13.76718 -13.57723 -13.33729 -13.15399 -12.90543 -12.65184 -12.43058 -12.35281 -12.13329 -12.09648 -11.79017 -11.70648 -11.57665 -11.42323 -11.02701 -10.81272 -10.53217 -10.36532 -10.13752 -9.99288 -9.81508 -9.77108 -9.71730 -9.57402 -9.41602 -8.73668 -8.44228 -8.20317 -8.06999 -6.91349 -6.13498 -2.95420 1.27775 2.38461 2.90820 3.51384 3.55740 3.62407 3.75957 3.78218 4.19612 4.66116 4.73893 4.79637 5.07025 5.18460 5.22255 5.23637 5.31369 5.35543 5.37643 5.44250 5.47159 5.58878 5.63954 5.71750 5.76209 5.95127 5.97403 5.98700 5.99341 6.02889 6.05871 6.08575 6.27946 6.37568 6.38784 6.41479 6.63458 6.71592 6.72502 6.87798 6.92894 6.99223 7.10192 7.14751 7.15747 7.25772 7.28617 8.00191 8.10481 8.58784 8.61761 9.12982 9.91496 10.35835 11.17075 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.004317 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.232650 B = 6484.735114 C = 7230.013464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.531 5.531 3 C 0.026 3.974 4 C 0.126 3.874 5 C -0.101 4.101 6 C -0.221 4.221 7 C -0.014 4.014 8 O -0.160 6.160 9 C -0.041 4.041 10 C 0.599 3.401 11 O -0.520 6.520 12 N -0.693 5.693 13 C 0.116 3.884 14 H 0.076 0.924 15 C -0.112 4.112 16 C -0.109 4.109 17 C -0.136 4.136 18 C 0.132 3.868 19 N -0.585 5.585 20 C -0.351 4.351 21 H 0.064 0.936 22 C -0.015 4.015 23 N -0.899 5.899 24 Si 1.032 2.968 25 H -0.289 1.289 26 H -0.296 1.296 27 H -0.296 1.296 28 C 0.153 3.847 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.150 0.850 38 H 0.206 0.794 39 H 0.403 0.597 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.023 0.977 47 H 0.091 0.909 48 H 0.272 0.728 49 H 0.044 0.956 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 2.163 13.946 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.254 5.254 3 C -0.123 4.123 4 C -0.002 4.002 5 C -0.104 4.104 6 C -0.241 4.241 7 C -0.084 4.084 8 O -0.054 6.054 9 C -0.095 4.095 10 C 0.384 3.616 11 O -0.398 6.398 12 N -0.341 5.341 13 C 0.008 3.992 14 H 0.094 0.906 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.175 4.175 18 C 0.008 3.992 19 N -0.306 5.306 20 C -0.479 4.479 21 H 0.082 0.918 22 C -0.217 4.217 23 N -0.541 5.541 24 Si 0.862 3.138 25 H -0.215 1.215 26 H -0.223 1.223 27 H -0.224 1.224 28 C 0.023 3.977 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.167 0.833 38 H 0.223 0.777 39 H 0.237 0.763 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.109 0.891 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.846 2.431 12.181 13.333 hybrid contribution -0.492 0.106 2.174 2.231 sum -5.337 2.537 14.355 15.523 Atomic orbital electron populations 1.22335 0.86970 1.02659 0.99738 1.61804 1.07716 1.13204 1.42695 1.22407 1.01392 0.88892 0.99569 1.20480 0.89284 0.99585 0.90814 1.20284 0.96428 0.95910 0.97825 1.21633 0.91803 1.04432 1.06223 1.24232 1.00401 0.90145 0.93646 1.84125 1.24536 1.44973 1.51810 1.22184 0.80059 1.02898 1.04353 1.16426 0.86255 0.79613 0.79331 1.90805 1.12011 1.68743 1.68263 1.45927 1.10895 1.36884 1.40437 1.22825 0.94654 0.88282 0.93427 0.90572 1.21671 1.00110 0.95874 0.97376 1.20935 1.00470 0.97757 0.95578 1.21102 1.00840 0.98176 0.97400 1.20524 0.97903 0.88019 0.92743 1.44375 1.41878 1.19224 1.25157 1.19870 1.12018 0.92317 1.23670 0.91843 1.25348 0.92212 1.03706 1.00434 1.70886 1.31293 1.07920 1.43960 0.84003 0.75658 0.76704 0.77424 1.21461 1.22272 1.22376 1.20630 0.91319 0.98182 0.87604 0.96314 0.91472 0.90893 0.91371 0.91621 0.96151 0.88509 0.94506 0.83273 0.77744 0.76287 0.93650 0.90966 0.91723 0.92650 0.94253 0.90972 0.95833 0.89055 0.91542 0.93755 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.56 60.07 0.57 0.96 16 2 N -0.53 -7.76 5.00 -252.71 -1.26 -9.03 16 3 C 0.03 0.33 9.35 60.06 0.56 0.89 16 4 C 0.13 1.76 4.65 -4.98 -0.02 1.74 16 5 C -0.10 -1.50 4.79 -104.43 -0.50 -2.00 16 6 C -0.22 -2.65 10.46 -39.89 -0.42 -3.07 16 7 C -0.01 -0.17 12.08 29.63 0.36 0.19 16 8 O -0.16 -2.49 10.41 4.98 0.05 -2.43 16 9 C -0.04 -0.70 7.12 -36.80 -0.26 -0.97 16 10 C 0.60 11.28 7.60 -12.86 -0.10 11.18 16 11 O -0.52 -10.52 14.63 5.19 0.08 -10.44 16 12 N -0.69 -12.91 5.08 -53.46 -0.27 -13.18 16 13 C 0.12 2.14 2.91 -66.22 -0.19 1.95 16 14 H 0.08 1.38 7.57 -51.93 -0.39 0.99 16 15 C -0.11 -1.92 5.23 -27.19 -0.14 -2.06 16 16 C -0.11 -1.82 5.76 -28.40 -0.16 -1.98 16 17 C -0.14 -2.64 5.00 -30.18 -0.15 -2.80 16 18 C 0.13 2.95 5.23 -5.20 -0.03 2.92 16 19 N -0.59 -13.94 2.62 -175.40 -0.46 -14.40 16 20 C -0.35 -9.44 9.45 -15.06 -0.14 -9.59 16 21 H 0.06 1.82 8.04 -52.49 -0.42 1.40 16 22 C -0.01 -0.40 4.46 -17.43 -0.08 -0.48 16 23 N -0.90 -25.29 12.05 55.49 0.67 -24.62 16 24 Si 1.03 25.09 30.06 -169.99 -5.11 19.98 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.15 3.26 4.75 -4.92 -0.02 3.24 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 31 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 32 H 0.07 0.93 7.18 -51.93 -0.37 0.56 16 33 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 34 H 0.02 0.22 8.06 -51.93 -0.42 -0.20 16 35 H 0.10 1.47 6.85 -51.93 -0.36 1.12 16 36 H 0.04 0.44 8.05 -51.93 -0.42 0.02 16 37 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.21 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.40 7.54 8.21 -40.82 -0.33 7.21 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.40 6.58 -51.93 -0.34 1.06 16 42 H 0.06 1.07 6.28 -51.93 -0.33 0.74 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.58 4.56 -51.93 -0.24 1.34 16 46 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 47 H 0.09 2.32 5.73 -51.93 -0.30 2.02 16 48 H 0.27 7.44 5.09 -40.82 -0.21 7.23 16 49 H 0.04 1.06 7.80 -51.93 -0.41 0.65 16 50 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -30.56 387.47 -9.10 -39.66 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.90 Total: 8.50 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.73 Total: 0.12 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -1.33 Total: -61.22 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.13 Total: -12.88 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.11 Total: 19.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.56 -9.10 -39.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034363522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.260 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds