Wall clock time and date at job start Tue Mar 31 2020 18:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00210 * 2 1 4 4 C 1.46895 * 110.99811 * 123.95437 * 2 1 3 5 5 C 1.50701 * 109.47120 * 169.13595 * 4 2 1 6 6 C 1.40368 * 126.64339 * 100.48114 * 5 4 2 7 7 C 1.35133 * 107.11176 * 179.97438 * 6 5 4 8 8 O 1.33932 * 108.77089 * 359.75252 * 7 6 5 9 9 C 1.34918 * 109.37887 * 0.40451 * 8 7 6 10 10 C 1.46660 * 125.98329 * 179.86052 * 9 8 7 11 11 O 1.21695 * 119.99850 * 174.50196 * 10 9 8 12 12 N 1.34771 * 120.00182 * 354.49456 * 10 9 8 13 13 C 1.46501 * 120.00205 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.24444 * 324.66265 * 13 12 10 15 15 C 1.54841 * 109.36073 * 205.00112 * 13 12 10 16 16 C 1.50126 * 110.81657 * 200.92737 * 15 13 12 17 17 C 1.52526 * 105.41413 * 97.68906 * 16 15 13 18 18 C 1.46246 * 114.27269 * 270.59181 * 17 16 15 19 19 N 1.50166 * 107.53280 * 58.40871 * 18 17 16 20 20 C 1.36939 * 120.53749 * 109.56457 * 19 18 17 21 21 H 1.07993 * 119.99981 * 171.97947 * 20 19 18 22 22 C 1.38811 * 119.99924 * 351.97869 * 20 19 18 23 23 N 1.31619 * 120.00057 * 317.90141 * 22 20 19 24 24 Si 1.86795 * 120.00206 * 137.90168 * 22 20 19 25 25 H 1.48496 * 109.47419 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47111 * 59.99539 * 24 22 20 27 27 H 1.48500 * 109.47155 * 300.00296 * 24 22 20 28 28 C 1.43433 * 118.92764 * 289.83865 * 19 18 17 29 29 H 1.09005 * 109.47115 * 296.04952 * 1 2 3 30 30 H 1.09004 * 109.46809 * 56.04480 * 1 2 3 31 31 H 1.08997 * 109.47622 * 176.04925 * 1 2 3 32 32 H 1.09003 * 109.46996 * 189.53409 * 3 2 1 33 33 H 1.09007 * 109.47039 * 309.52558 * 3 2 1 34 34 H 1.08994 * 109.47101 * 69.52991 * 3 2 1 35 35 H 1.09003 * 109.47463 * 49.13649 * 4 2 1 36 36 H 1.09005 * 109.47253 * 289.13900 * 4 2 1 37 37 H 1.08001 * 126.44406 * 359.97438 * 6 5 4 38 38 H 1.08002 * 125.61168 * 180.02562 * 7 6 5 39 39 H 0.97002 * 120.00226 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.20636 * 80.58565 * 15 13 12 41 41 H 1.08996 * 109.21245 * 321.27487 * 15 13 12 42 42 H 1.08999 * 110.24755 * 338.71138 * 16 15 13 43 43 H 1.09006 * 110.36810 * 216.72082 * 16 15 13 44 44 H 1.08996 * 108.52408 * 149.35408 * 17 16 15 45 45 H 1.08998 * 108.39870 * 31.74338 * 17 16 15 46 46 H 1.08996 * 109.84501 * 298.90081 * 18 17 16 47 47 H 1.09000 * 109.89699 * 177.94899 * 18 17 16 48 48 H 0.97006 * 119.99880 * 353.77202 * 23 22 20 49 49 H 1.08997 * 108.16102 * 213.02956 * 28 19 18 50 50 H 1.09000 * 108.16057 * 329.60175 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4781 -0.9708 0.9622 6 6 4.5039 -0.2441 1.5869 7 6 5.6761 -0.7547 1.1495 8 8 5.4190 -1.7555 0.2973 9 6 4.0840 -1.8995 0.1655 10 6 3.4030 -2.8850 -0.6805 11 8 2.1908 -2.9859 -0.6420 12 7 4.1195 -3.6788 -1.5008 13 6 3.4392 -4.6637 -2.3455 14 1 2.5798 -5.0650 -1.8086 15 6 4.4182 -5.8153 -2.6814 16 6 3.9696 -6.5563 -3.9076 17 6 4.7840 -5.9700 -5.0562 18 6 4.1631 -4.8161 -5.7057 19 7 3.9546 -3.7636 -4.6552 20 6 4.7056 -2.6185 -4.6589 21 1 4.4639 -1.8121 -3.9825 22 6 5.7775 -2.4943 -5.5320 23 7 6.5911 -3.5109 -5.7240 24 14 6.0654 -0.8844 -6.4346 25 1 7.2651 -1.0100 -7.3006 26 1 6.2781 0.2050 -5.4480 27 1 4.8812 -0.5684 -7.2730 28 6 2.9602 -3.9797 -3.6443 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0719 1.3473 -0.1702 33 1 1.5151 1.9450 -0.7927 34 1 1.7902 1.8394 0.9627 35 1 1.4979 -1.7347 1.1847 36 1 1.8111 -0.2175 2.0614 37 1 4.3796 0.5699 2.2857 38 1 6.6584 -0.4149 1.4426 39 1 5.0857 -3.5986 -1.5314 40 1 4.4606 -6.5069 -1.8399 41 1 5.4117 -5.4022 -2.8555 42 1 2.9054 -6.3940 -4.0782 43 1 4.1763 -7.6216 -3.8039 44 1 4.9371 -6.7476 -5.8045 45 1 5.7568 -5.6673 -4.6688 46 1 3.2040 -5.1052 -6.1355 47 1 4.8186 -4.4335 -6.4880 48 1 6.4968 -4.3152 -5.1899 49 1 2.5330 -3.0135 -3.3760 50 1 2.1652 -4.5888 -4.0745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034363522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:48 Heat of formation + Delta-G solvation = 3.443543 kcal Electronic energy + Delta-G solvation = -31122.222234 eV Core-core repulsion = 27151.750918 eV Total energy + Delta-G solvation = -3970.471316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.68529 -40.82217 -39.42559 -38.40799 -36.08720 -34.93742 -34.20637 -33.01875 -31.99851 -30.80372 -28.46655 -28.38827 -27.69544 -25.87774 -24.82583 -23.87244 -23.08146 -22.34930 -21.79949 -20.93152 -20.53619 -19.06999 -18.96252 -17.43849 -17.23806 -17.16401 -16.60290 -16.32183 -16.17657 -16.13315 -15.81208 -15.58544 -15.49276 -15.13797 -14.89668 -14.32286 -14.27722 -13.89469 -13.87147 -13.76176 -13.44450 -13.40593 -13.15103 -12.76068 -12.73610 -12.62110 -12.53817 -12.47352 -12.40274 -12.16812 -11.93867 -11.75097 -11.52645 -11.27584 -11.17834 -11.06501 -10.79857 -10.36116 -10.02485 -9.56775 -9.21867 -8.83917 -8.27613 -5.04470 0.09161 1.40082 1.57640 1.63035 1.79038 1.82939 2.16313 2.41540 2.68075 3.13153 3.18100 3.47853 3.68583 3.76447 3.83338 3.92320 4.01679 4.23518 4.25777 4.32658 4.40462 4.44759 4.46202 4.47863 4.50298 4.54519 4.68035 4.69319 4.72094 4.74373 4.93373 4.95405 4.97849 5.00377 5.03870 5.08720 5.13450 5.15833 5.30992 5.38922 5.41614 5.49582 5.60116 5.64480 5.89835 5.95939 6.09682 6.15569 6.50777 6.57090 7.11750 7.16725 7.89755 8.33746 9.05008 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.004317 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.232650 B = 6484.735114 C = 7230.013464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.563 5.563 3 C 0.030 3.970 4 C 0.128 3.872 5 C -0.094 4.094 6 C -0.223 4.223 7 C 0.000 4.000 8 O -0.179 6.179 9 C -0.090 4.090 10 C 0.595 3.405 11 O -0.544 6.544 12 N -0.697 5.697 13 C 0.124 3.876 14 H 0.084 0.916 15 C -0.103 4.103 16 C -0.100 4.100 17 C -0.129 4.129 18 C 0.135 3.865 19 N -0.596 5.596 20 C -0.349 4.349 21 H 0.037 0.963 22 C -0.053 4.053 23 N -0.919 5.919 24 Si 1.075 2.925 25 H -0.291 1.291 26 H -0.288 1.288 27 H -0.293 1.293 28 C 0.158 3.842 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.183 0.817 38 H 0.251 0.749 39 H 0.400 0.600 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.039 0.961 47 H 0.058 0.942 48 H 0.269 0.731 49 H 0.009 0.991 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 2.547 15.532 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.287 5.287 3 C -0.118 4.118 4 C 0.001 3.999 5 C -0.097 4.097 6 C -0.242 4.242 7 C -0.069 4.069 8 O -0.074 6.074 9 C -0.142 4.142 10 C 0.382 3.618 11 O -0.424 6.424 12 N -0.345 5.345 13 C 0.016 3.984 14 H 0.102 0.898 15 C -0.141 4.141 16 C -0.138 4.138 17 C -0.168 4.168 18 C 0.012 3.988 19 N -0.319 5.319 20 C -0.477 4.477 21 H 0.055 0.945 22 C -0.253 4.253 23 N -0.562 5.562 24 Si 0.903 3.097 25 H -0.217 1.217 26 H -0.215 1.215 27 H -0.221 1.221 28 C 0.029 3.971 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.200 0.800 38 H 0.267 0.733 39 H 0.234 0.766 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.027 0.973 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.842 2.804 13.781 14.874 hybrid contribution -0.527 0.059 1.742 1.821 sum -5.369 2.863 15.523 16.673 Atomic orbital electron populations 1.22294 0.85916 1.02073 1.01027 1.61745 1.09001 1.14453 1.43533 1.22363 1.00383 0.88104 1.00960 1.20444 0.88655 0.99027 0.91787 1.20660 0.97443 0.95042 0.96601 1.21993 0.90713 1.04968 1.06548 1.25254 1.02421 0.87975 0.91205 1.84101 1.23859 1.46461 1.53027 1.21896 0.81035 1.04589 1.06697 1.16750 0.86201 0.79635 0.79243 1.90769 1.12884 1.69589 1.69175 1.45945 1.10686 1.37220 1.40625 1.22637 0.95461 0.88504 0.91782 0.89826 1.21595 0.98065 0.95601 0.98847 1.20926 1.00062 0.99291 0.93542 1.20942 0.99642 0.97515 0.98689 1.20487 0.98076 0.88433 0.91823 1.44399 1.41748 1.19320 1.26403 1.19741 1.11832 0.92802 1.23369 0.94531 1.26183 0.92374 1.05573 1.01161 1.70923 1.32045 1.08425 1.44788 0.83380 0.75376 0.74370 0.76563 1.21661 1.21474 1.22070 1.20593 0.90988 0.96936 0.88600 0.94064 0.91133 0.92326 0.92762 0.91339 0.93818 0.90479 0.91951 0.79956 0.73330 0.76603 0.90926 0.93466 0.91226 0.89375 0.92462 0.93618 0.94286 0.92369 0.91817 0.97299 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.56 127.69 1.22 2.06 16 2 N -0.56 -16.25 5.00 -953.45 -4.77 -21.02 16 3 C 0.03 0.71 9.35 127.69 1.19 1.91 16 4 C 0.13 3.50 4.65 85.56 0.40 3.90 16 5 C -0.09 -2.72 4.79 -19.74 -0.09 -2.82 16 6 C -0.22 -4.77 10.46 22.07 0.23 -4.54 16 7 C 0.00 0.01 12.08 67.10 0.81 0.82 16 8 O -0.18 -5.52 10.41 -5.09 -0.05 -5.57 16 9 C -0.09 -3.09 7.12 24.07 0.17 -2.92 16 10 C 0.59 23.31 7.60 86.44 0.66 23.97 16 11 O -0.54 -22.95 14.63 -4.33 -0.06 -23.01 16 12 N -0.70 -26.92 5.08 -441.28 -2.24 -29.16 16 13 C 0.12 4.61 2.91 46.10 0.13 4.74 16 14 H 0.08 3.02 7.57 -2.39 -0.02 3.00 16 15 C -0.10 -3.43 5.23 30.30 0.16 -3.27 16 16 C -0.10 -3.12 5.76 29.51 0.17 -2.95 16 17 C -0.13 -4.92 5.00 28.36 0.14 -4.78 16 18 C 0.14 6.07 5.23 83.58 0.44 6.51 16 19 N -0.60 -29.09 2.62 -708.85 -1.86 -30.94 16 20 C -0.35 -19.39 9.45 84.03 0.79 -18.59 16 21 H 0.04 2.20 8.04 -2.91 -0.02 2.18 16 22 C -0.05 -2.98 4.46 84.86 0.38 -2.61 16 23 N -0.92 -52.79 12.05 21.65 0.26 -52.53 16 24 Si 1.07 51.79 30.06 68.60 2.06 53.85 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 C 0.16 6.90 4.75 87.43 0.41 7.31 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.07 1.61 8.06 -2.38 -0.02 1.59 16 31 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 32 H 0.05 1.43 7.18 -2.39 -0.02 1.41 16 33 H 0.07 1.56 8.02 -2.38 -0.02 1.54 16 34 H 0.04 0.83 8.06 -2.39 -0.02 0.81 16 35 H 0.08 2.40 6.85 -2.39 -0.02 2.38 16 36 H 0.06 1.35 8.05 -2.38 -0.02 1.33 16 37 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.25 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.40 15.69 8.21 -92.71 -0.76 14.93 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.84 6.58 -2.39 -0.02 1.82 16 42 H 0.07 2.12 6.28 -2.39 -0.02 2.11 16 43 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 2.02 4.56 -2.39 -0.01 2.00 16 46 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 47 H 0.06 3.01 5.73 -2.39 -0.01 3.00 16 48 H 0.27 15.16 5.09 -92.70 -0.47 14.69 16 49 H 0.01 0.44 7.80 -2.39 -0.02 0.42 16 50 H 0.05 2.06 6.89 -2.39 -0.02 2.04 16 Total: -1.00 -69.32 387.47 1.04 -68.28 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.48 Total: 31.35 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 7.22 Total: 8.75 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -8.61 Total: -133.65 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.12 Total: -28.59 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.06 Total: 53.85 kcal Total: -69.32 1.04 -68.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034363522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.727 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds