Wall clock time and date at job start Tue Mar 31 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99850 * 2 1 4 4 C 1.46906 * 110.99728 * 123.95151 * 2 1 3 5 5 C 1.50699 * 109.47140 * 66.04805 * 4 2 1 6 6 C 1.40363 * 126.64244 * 259.68382 * 5 4 2 7 7 C 1.35136 * 107.10974 * 179.89440 * 6 5 4 8 8 O 1.33931 * 108.76831 * 0.37710 * 7 6 5 9 9 C 1.34910 * 109.38392 * 359.75750 * 8 7 6 10 10 C 1.46662 * 125.98543 * 180.02562 * 9 8 7 11 11 O 1.21697 * 119.99729 * 179.97438 * 10 9 8 12 12 N 1.34770 * 119.99977 * 359.96329 * 10 9 8 13 13 C 1.46504 * 119.99722 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47064 * 324.99454 * 13 12 10 15 15 C 1.52996 * 109.47536 * 84.99834 * 13 12 10 16 16 C 1.52998 * 109.47642 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46992 * 300.00209 * 16 15 13 18 18 H 1.09002 * 109.46868 * 299.99466 * 17 16 15 19 19 N 1.46492 * 109.47212 * 179.97438 * 17 16 15 20 20 C 1.36939 * 120.00253 * 84.99833 * 19 17 16 21 21 H 1.07997 * 119.99882 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00428 * 180.02562 * 20 19 17 23 23 N 1.31625 * 119.99736 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00032 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46954 * 60.00069 * 24 22 20 26 26 H 1.48508 * 109.46747 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47052 * 299.99710 * 24 22 20 28 28 C 1.53001 * 109.47368 * 59.99256 * 17 16 15 29 29 C 1.52996 * 109.47514 * 300.00676 * 28 17 16 30 30 H 1.08996 * 109.47030 * 296.04770 * 1 2 3 31 31 H 1.08999 * 109.46702 * 56.04909 * 1 2 3 32 32 H 1.08996 * 109.46890 * 176.04778 * 1 2 3 33 33 H 1.09005 * 109.46478 * 183.95191 * 3 2 1 34 34 H 1.08997 * 109.46843 * 303.95082 * 3 2 1 35 35 H 1.08997 * 109.46760 * 63.95383 * 3 2 1 36 36 H 1.09004 * 109.47040 * 186.04743 * 4 2 1 37 37 H 1.09000 * 109.47033 * 306.04695 * 4 2 1 38 38 H 1.07997 * 126.44785 * 0.04285 * 6 5 4 39 39 H 1.07998 * 125.61412 * 180.11207 * 7 6 5 40 40 H 0.96996 * 120.00192 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.47194 * 300.00302 * 15 13 12 42 42 H 1.09001 * 109.47008 * 59.99244 * 15 13 12 43 43 H 1.08992 * 109.47285 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.46878 * 59.99669 * 16 15 13 45 45 H 0.97000 * 120.00182 * 265.00125 * 19 17 16 46 46 H 0.96999 * 119.99618 * 180.02562 * 23 22 20 47 47 H 1.09001 * 109.47079 * 180.02562 * 28 17 16 48 48 H 1.09002 * 109.46955 * 60.00263 * 28 17 16 49 49 H 1.09007 * 109.46691 * 299.99312 * 29 28 17 50 50 H 1.08997 * 109.47168 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6369 -2.2204 0.9730 6 6 0.5859 -2.9011 1.6071 7 6 0.6231 -4.1810 1.1750 8 8 1.6444 -4.3173 0.3193 9 6 2.2752 -3.1327 0.1826 10 6 3.4419 -2.8705 -0.6666 11 8 3.9259 -1.7547 -0.7081 12 7 3.9781 -3.8654 -1.4008 13 6 5.1439 -3.6036 -2.2486 14 1 5.0759 -2.5960 -2.6588 15 6 6.4201 -3.7295 -1.4141 16 6 7.6376 -3.4568 -2.2997 17 6 7.6739 -4.4722 -3.4436 18 1 7.7417 -5.4796 -3.0330 19 7 8.8393 -4.2107 -4.2918 20 6 10.0593 -4.7372 -3.9606 21 1 10.1622 -5.3455 -3.0742 22 6 11.1637 -4.4890 -4.7641 23 7 11.0381 -3.7479 -5.8446 24 14 12.8279 -5.2066 -4.3118 25 1 12.7352 -6.6883 -4.2772 26 1 13.8349 -4.7976 -5.3238 27 1 13.2367 -4.7048 -2.9753 28 6 6.3977 -4.3464 -4.2780 29 6 5.1802 -4.6190 -3.3925 30 1 -0.3633 0.4513 0.9233 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0828 1.3432 -0.0708 34 1 1.5898 1.9163 -0.8525 35 1 1.7043 1.8723 0.9233 36 1 3.0797 -0.6611 1.1758 37 1 1.5610 -0.3872 2.0628 38 1 -0.1213 -2.4806 2.3067 39 1 -0.0559 -4.9658 1.4740 40 1 3.5927 -4.7548 -1.3673 41 1 6.3940 -3.0064 -0.5989 42 1 6.4880 -4.7371 -1.0039 43 1 8.5466 -3.5460 -1.7051 44 1 7.5698 -2.4493 -2.7102 45 1 8.7468 -3.6646 -5.0881 46 1 11.8098 -3.5748 -6.4063 47 1 6.4234 -5.0701 -5.0927 48 1 6.3299 -3.3389 -4.6886 49 1 5.2480 -5.6266 -2.9820 50 1 4.2711 -4.5298 -3.9871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034716879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:53 Heat of formation + Delta-G solvation = -12.238969 kcal Electronic energy + Delta-G solvation = -29232.131241 eV Core-core repulsion = 25260.979879 eV Total energy + Delta-G solvation = -3971.151361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.99389 -39.77103 -37.98303 -37.53945 -34.86594 -33.57424 -32.96213 -30.96377 -30.37066 -30.15408 -27.87320 -27.73608 -26.90812 -23.97445 -23.09403 -22.37747 -22.26026 -21.57779 -20.64190 -20.05963 -19.36449 -18.23445 -16.99309 -16.68327 -16.38264 -16.16842 -15.40746 -15.38647 -15.13100 -14.78784 -14.61896 -14.37452 -13.87885 -13.69339 -13.53782 -13.50486 -13.26663 -12.95959 -12.71095 -12.52929 -12.39607 -11.99486 -11.95217 -11.86474 -11.76414 -11.73379 -11.40038 -11.00439 -10.77601 -10.72374 -10.64417 -10.21031 -10.16302 -10.07469 -10.00518 -9.72128 -9.55269 -9.06084 -8.82761 -8.77248 -8.50155 -6.90059 -5.71723 -3.00008 0.85868 2.02164 2.47133 3.12016 3.16849 3.46962 3.51297 3.52287 3.89579 4.39299 4.42598 4.62304 4.66975 4.93884 4.95754 5.02819 5.09359 5.11939 5.16361 5.29975 5.32868 5.36068 5.47265 5.56025 5.62743 5.64048 5.65897 5.71779 5.73691 5.78509 5.79292 5.89866 5.92562 6.00784 6.07023 6.28624 6.29873 6.34994 6.50463 6.55367 6.62190 6.70334 6.77633 6.81669 6.85853 7.03726 7.19955 7.47557 7.74154 8.11732 8.47351 9.58040 10.17135 10.51648 11.51037 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020274 B = 0.002202 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.735363 B =12710.366830 C =13310.102679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.029 3.971 4 C 0.121 3.879 5 C -0.092 4.092 6 C -0.220 4.220 7 C -0.011 4.011 8 O -0.164 6.164 9 C -0.053 4.053 10 C 0.600 3.400 11 O -0.500 6.500 12 N -0.717 5.717 13 C 0.147 3.853 14 H 0.091 0.909 15 C -0.124 4.124 16 C -0.131 4.131 17 C 0.177 3.823 18 H 0.046 0.954 19 N -0.725 5.725 20 C -0.236 4.236 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.120 4.120 29 C -0.119 4.119 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.021 0.979 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.152 0.848 39 H 0.209 0.791 40 H 0.400 0.600 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.630 2.298 15.231 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.255 5.255 3 C -0.119 4.119 4 C -0.006 4.006 5 C -0.095 4.095 6 C -0.240 4.240 7 C -0.081 4.081 8 O -0.059 6.059 9 C -0.106 4.106 10 C 0.385 3.615 11 O -0.376 6.376 12 N -0.367 5.367 13 C 0.044 3.956 14 H 0.109 0.891 15 C -0.163 4.163 16 C -0.173 4.173 17 C 0.067 3.933 18 H 0.064 0.936 19 N -0.366 5.366 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.159 4.159 29 C -0.158 4.158 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.170 0.830 39 H 0.225 0.775 40 H 0.234 0.766 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.829 2.543 14.632 29.794 hybrid contribution 0.180 -0.200 0.994 1.030 sum -25.648 2.343 15.626 30.125 Atomic orbital electron populations 1.22421 0.87829 1.02151 1.00081 1.61848 1.07287 1.13842 1.42524 1.22353 1.01563 0.87995 0.99993 1.20518 1.01637 0.87241 0.91195 1.20362 0.95551 0.96418 0.97169 1.21706 1.02026 0.94279 1.05943 1.24279 0.91458 0.98952 0.93378 1.84077 1.36493 1.33329 1.52007 1.22096 0.99428 0.83752 1.05341 1.16490 0.80773 0.85064 0.79207 1.90894 1.60592 1.21824 1.64268 1.46083 1.32346 1.12552 1.45743 1.21160 0.83748 1.00688 0.90048 0.89128 1.21906 0.94470 1.01416 0.98513 1.22218 0.95889 1.01073 0.98071 1.20238 0.86610 0.96056 0.90371 0.93632 1.42424 1.04233 1.61492 1.28422 1.19198 0.86131 1.24725 1.06704 0.91307 1.24737 0.97988 1.00795 0.97571 1.69654 1.29799 1.42794 1.15996 0.86288 0.84151 0.78602 0.77277 1.21346 1.21749 1.21326 1.21751 0.93839 1.02139 0.98158 1.21751 0.99180 0.98615 0.96208 0.95985 0.91542 0.91485 0.90684 0.91374 0.96030 0.88385 0.94171 0.83017 0.77492 0.76557 0.92310 0.92310 0.91818 0.92435 0.78300 0.93526 0.91357 0.91908 0.91560 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.37 60.06 0.56 0.77 16 2 N -0.53 -5.76 5.01 -252.71 -1.27 -7.02 16 3 C 0.03 0.27 9.57 60.07 0.57 0.85 16 4 C 0.12 1.28 4.60 -4.97 -0.02 1.26 16 5 C -0.09 -0.97 4.75 -104.44 -0.50 -1.47 16 6 C -0.22 -1.70 10.25 -39.89 -0.41 -2.11 16 7 C -0.01 -0.08 12.08 29.63 0.36 0.28 16 8 O -0.16 -1.58 10.40 5.01 0.05 -1.53 16 9 C -0.05 -0.62 7.13 -36.80 -0.26 -0.88 16 10 C 0.60 8.10 7.75 -12.86 -0.10 8.00 16 11 O -0.50 -8.11 14.65 5.19 0.08 -8.04 16 12 N -0.72 -8.57 5.07 -55.12 -0.28 -8.85 16 13 C 0.15 2.00 2.45 -67.93 -0.17 1.83 16 14 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 15 C -0.12 -1.86 5.49 -26.73 -0.15 -2.01 16 16 C -0.13 -2.41 5.50 -26.73 -0.15 -2.56 16 17 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 18 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 19 N -0.73 -18.24 5.12 -53.43 -0.27 -18.52 16 20 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C -0.12 -1.94 5.39 -26.73 -0.14 -2.08 16 29 C -0.12 -1.52 5.39 -26.73 -0.14 -1.66 16 30 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.07 0.59 6.82 -51.93 -0.35 0.24 16 33 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 35 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.10 1.20 6.94 -51.93 -0.36 0.84 16 37 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.21 0.53 8.06 -52.49 -0.42 0.10 16 40 H 0.40 3.90 8.36 -40.82 -0.34 3.56 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -32.87 403.84 -9.37 -42.24 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -8.49 Total: 9.55 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.98 Total: -3.76 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -1.09 Total: -62.14 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.13 Total: -9.56 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.87 -9.37 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034716879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.001 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds