Wall clock time and date at job start Tue Mar 31 2020 18:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34771 * 120.00146 * 2 1 4 4 O 1.21283 * 120.00147 * 185.66830 * 3 2 1 5 5 C 1.50707 * 120.00105 * 5.66036 * 3 2 1 6 6 H 1.08999 * 109.49316 * 41.98153 * 5 3 2 7 7 C 1.53032 * 109.49763 * 281.88650 * 5 3 2 8 8 C 1.53038 * 109.53928 * 178.68082 * 7 5 3 9 9 C 1.53192 * 109.31138 * 61.36426 * 8 7 5 10 10 N 1.46920 * 108.77656 * 305.36433 * 9 8 7 11 11 C 1.34779 * 120.63670 * 233.58665 * 10 9 8 12 12 O 1.21284 * 120.00255 * 180.02562 * 11 10 9 13 13 C 1.50702 * 119.99396 * 0.02562 * 11 10 9 14 14 C 1.52999 * 117.49805 * 248.74172 * 13 11 10 15 15 C 1.52999 * 117.49664 * 180.08555 * 13 11 10 16 16 C 1.46933 * 118.74011 * 53.60836 * 10 9 8 17 17 C 1.46498 * 119.99625 * 179.97438 * 2 1 3 18 18 C 1.53950 * 113.73946 * 42.16746 * 17 2 1 19 19 N 1.47585 * 86.11093 * 222.04045 * 18 17 2 20 20 C 1.36947 * 134.48784 * 204.63720 * 19 18 17 21 21 H 1.08003 * 119.99246 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99960 * 0.02562 * 20 19 18 23 23 N 1.31617 * 119.99861 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99530 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47723 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47078 * 120.00353 * 24 22 20 27 27 H 1.48504 * 109.47160 * 239.99749 * 24 22 20 28 28 C 1.47579 * 91.01736 * 24.64044 * 19 18 17 29 29 H 1.08998 * 109.47049 * 204.75808 * 1 2 3 30 30 H 1.09003 * 109.46949 * 324.75951 * 1 2 3 31 31 H 1.08994 * 109.46583 * 84.75457 * 1 2 3 32 32 H 1.09000 * 109.46234 * 298.69986 * 7 5 3 33 33 H 1.09005 * 109.46666 * 58.66123 * 7 5 3 34 34 H 1.09000 * 109.50039 * 301.41219 * 8 7 5 35 35 H 1.09006 * 109.52989 * 181.33238 * 8 7 5 36 36 H 1.09005 * 109.58753 * 185.57994 * 9 8 7 37 37 H 1.09000 * 109.58644 * 65.15247 * 9 8 7 38 38 H 1.09002 * 115.55279 * 34.42114 * 13 11 10 39 39 H 1.08998 * 117.49747 * 0.02562 * 14 13 11 40 40 H 1.09002 * 117.49528 * 145.02173 * 14 13 11 41 41 H 1.09000 * 117.50239 * 214.98266 * 15 13 11 42 42 H 1.09005 * 117.49784 * 359.97438 * 15 13 11 43 43 H 1.08989 * 109.58816 * 186.60430 * 16 10 9 44 44 H 1.09001 * 109.58421 * 66.17559 * 16 10 9 45 45 H 1.09008 * 113.01434 * 173.82011 * 17 2 1 46 46 H 1.08999 * 113.77002 * 336.33955 * 18 17 2 47 47 H 1.08996 * 113.76909 * 107.74223 * 18 17 2 48 48 H 0.97007 * 119.99384 * 180.02562 * 23 22 20 49 49 H 1.09002 * 113.76673 * 221.05801 * 28 19 18 50 50 H 1.08996 * 113.86994 * 89.67042 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3474 1.1697 -0.1037 5 6 1.3910 2.4691 0.1287 6 1 0.6093 2.3667 0.8814 7 6 0.7602 2.8311 -1.2177 8 6 -0.0269 4.1363 -1.0798 9 6 0.9281 5.2635 -0.6747 10 7 1.6461 4.8605 0.5421 11 6 1.6485 5.6527 1.6325 12 8 2.2454 5.3089 2.6307 13 6 0.9093 6.9658 1.6112 14 6 1.7446 8.2473 1.6415 15 6 0.9514 7.8208 2.8793 16 6 2.3621 3.5774 0.5477 17 6 2.1975 -1.2688 0.0006 18 6 1.6027 -2.3281 -0.9450 19 7 1.8512 -3.2935 0.1433 20 6 2.0502 -4.6473 0.1984 21 1 2.2155 -5.1305 1.1501 22 6 2.0395 -5.3985 -0.9689 23 7 1.8376 -4.8096 -2.1285 24 14 2.3116 -7.2449 -0.8938 25 1 2.5146 -7.6585 0.5180 26 1 1.1244 -7.9433 -1.4488 27 1 3.5129 -7.6011 -1.6909 28 6 1.7990 -2.2141 1.1483 29 1 -0.3633 -0.9332 0.4304 30 1 -0.3633 0.8394 0.5930 31 1 -0.3632 0.0939 -1.0233 32 1 1.5446 2.9573 -1.9640 33 1 0.0873 2.0325 -1.5300 34 1 -0.7956 4.0186 -0.3161 35 1 -0.4957 4.3816 -2.0329 36 1 0.3587 6.1721 -0.4788 37 1 1.6426 5.4435 -1.4779 38 1 -0.0104 6.9782 1.0262 39 1 2.8288 8.1406 1.6765 40 1 1.3743 9.1029 1.0767 41 1 0.0597 8.3960 3.1284 42 1 1.5135 7.4334 3.7291 43 1 2.7388 3.3736 1.5499 44 1 3.1935 3.6199 -0.1559 45 1 3.2744 -1.1392 -0.1075 46 1 0.5460 -2.1767 -1.1652 47 1 2.2030 -2.5075 -1.8369 48 1 1.8297 -5.3346 -2.9442 49 1 2.5560 -2.3024 1.9276 50 1 0.8007 -2.0279 1.5442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042772039.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:31 Heat of formation + Delta-G solvation = -2.516952 kcal Electronic energy + Delta-G solvation = -29606.443513 eV Core-core repulsion = 25635.713730 eV Total energy + Delta-G solvation = -3970.729783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86289 -41.03097 -39.57596 -38.26056 -36.98663 -36.03065 -34.31901 -33.67244 -32.29543 -29.68250 -27.93256 -27.30154 -26.67192 -26.07996 -24.77963 -23.86776 -23.28142 -22.31146 -20.96086 -19.93165 -19.82198 -18.90009 -18.64900 -18.19722 -17.39475 -17.02835 -16.80183 -16.57872 -16.22267 -15.77286 -15.59166 -15.36843 -15.12705 -15.04626 -14.88266 -14.32796 -14.05897 -13.85729 -13.76256 -13.54932 -13.41586 -13.28434 -13.23779 -13.15942 -12.83799 -12.60140 -12.51201 -12.43578 -12.16071 -12.07483 -11.95374 -11.88483 -11.65120 -11.58103 -11.48387 -11.36141 -10.92695 -10.91762 -10.68320 -9.72984 -9.58355 -8.99629 -7.95976 -5.30599 1.41232 1.44046 1.45657 1.52986 1.55947 1.73227 2.09002 2.46313 2.92912 3.22437 3.34672 3.41317 3.49305 3.70718 3.75015 3.83792 3.84829 3.98600 3.99973 4.08202 4.11601 4.22176 4.25910 4.33022 4.43738 4.50627 4.61028 4.65369 4.69150 4.75380 4.76869 4.79154 4.81722 4.89243 4.91094 4.94946 5.06623 5.09760 5.15550 5.15989 5.20390 5.25216 5.38130 5.43645 5.45297 5.65732 5.86318 6.36159 6.42900 6.86235 7.08947 7.13259 7.53832 8.47125 9.21194 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032190 B = 0.002161 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.627463 B =12954.241406 C =13304.476277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.597 5.597 3 C 0.515 3.485 4 O -0.589 6.589 5 C -0.104 4.104 6 H 0.113 0.887 7 C -0.112 4.112 8 C -0.124 4.124 9 C 0.097 3.903 10 N -0.603 5.603 11 C 0.533 3.467 12 O -0.595 6.595 13 C -0.195 4.195 14 C -0.141 4.141 15 C -0.156 4.156 16 C 0.134 3.866 17 C 0.113 3.887 18 C 0.164 3.836 19 N -0.637 5.637 20 C -0.236 4.236 21 H 0.086 0.914 22 C -0.066 4.066 23 N -0.952 5.952 24 Si 0.983 3.017 25 H -0.265 1.265 26 H -0.288 1.288 27 H -0.293 1.293 28 C 0.114 3.886 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.162 0.838 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.040 0.960 47 H 0.037 0.963 48 H 0.250 0.750 49 H 0.048 0.952 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.695 29.279 1.926 31.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.328 5.328 3 C 0.304 3.696 4 O -0.469 6.469 5 C -0.126 4.126 6 H 0.131 0.869 7 C -0.150 4.150 8 C -0.162 4.162 9 C -0.024 4.024 10 N -0.334 5.334 11 C 0.323 3.677 12 O -0.476 6.476 13 C -0.216 4.216 14 C -0.178 4.178 15 C -0.193 4.193 16 C 0.011 3.989 17 C 0.007 3.993 18 C 0.038 3.962 19 N -0.364 5.364 20 C -0.364 4.364 21 H 0.103 0.897 22 C -0.259 4.259 23 N -0.601 5.601 24 Si 0.811 3.189 25 H -0.189 1.189 26 H -0.215 1.215 27 H -0.220 1.220 28 C -0.012 4.012 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.179 0.821 39 H 0.099 0.901 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.738 28.773 2.274 30.461 hybrid contribution 0.669 -1.851 -0.085 1.970 sum -9.069 26.922 2.189 28.492 Atomic orbital electron populations 1.22111 0.77269 1.04288 1.03360 1.47974 1.08384 1.04728 1.71702 1.21135 0.87446 0.86114 0.74945 1.90672 1.16559 1.87926 1.51752 1.21597 0.98651 0.90007 1.02309 0.86890 1.21589 1.00206 1.00090 0.93109 1.21933 0.97499 0.92376 1.04367 1.22205 0.95434 0.99443 0.85327 1.48126 1.51797 1.18968 1.14540 1.20491 0.79696 0.85900 0.81573 1.90688 1.47081 1.75350 1.34450 1.22315 1.03599 0.88712 1.06964 1.23049 0.98015 0.95489 1.01241 1.23035 1.03777 1.01181 0.91336 1.21100 0.93645 0.82268 1.01930 1.23299 0.96844 0.81308 0.97815 1.22466 0.97068 0.84281 0.92415 1.45987 1.83385 1.02623 1.04421 1.19423 1.41388 0.81742 0.93849 0.89653 1.25680 1.02468 1.02825 0.94940 1.70012 1.56834 1.35716 0.97524 0.84949 0.76865 0.79246 0.77872 1.18924 1.21494 1.21973 1.23080 0.99235 0.85822 0.93027 0.91081 0.88163 0.90794 0.91869 0.89524 0.90053 0.87101 0.86165 0.90377 0.82089 0.90086 0.84429 0.85146 0.90312 0.91868 0.91486 0.89209 0.94272 0.94460 0.94069 0.93333 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.59 8.03 127.77 1.03 2.61 16 2 N -0.60 -18.76 3.10 -828.32 -2.56 -21.33 16 3 C 0.51 16.26 6.86 87.66 0.60 16.86 16 4 O -0.59 -24.07 15.38 -3.04 -0.05 -24.12 16 5 C -0.10 -2.23 1.89 -11.46 -0.02 -2.25 16 6 H 0.11 2.08 6.62 -2.39 -0.02 2.07 16 7 C -0.11 -1.66 5.05 30.62 0.15 -1.50 16 8 C -0.12 -0.91 6.08 30.67 0.19 -0.73 16 9 C 0.10 0.85 6.35 86.36 0.55 1.40 16 10 N -0.60 -11.05 2.97 -818.90 -2.43 -13.48 16 11 C 0.53 11.51 7.48 87.66 0.66 12.17 16 12 O -0.59 -19.11 15.67 -3.04 -0.05 -19.16 16 13 C -0.20 -2.31 5.12 -11.54 -0.06 -2.37 16 14 C -0.14 -1.35 10.24 30.62 0.31 -1.04 16 15 C -0.16 -1.87 10.05 30.62 0.31 -1.56 16 16 C 0.13 3.35 5.26 86.36 0.45 3.81 16 17 C 0.11 4.61 4.43 46.75 0.21 4.82 16 18 C 0.16 7.89 6.97 86.48 0.60 8.49 16 19 N -0.64 -33.45 3.70 -717.41 -2.65 -36.10 16 20 C -0.24 -13.47 10.70 84.03 0.90 -12.57 16 21 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 23 N -0.95 -57.84 11.38 21.65 0.25 -57.60 16 24 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 25 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 C 0.11 4.78 8.42 86.48 0.73 5.50 16 29 H 0.07 1.77 6.12 -2.39 -0.01 1.75 16 30 H 0.10 1.53 6.17 -2.39 -0.01 1.51 16 31 H 0.07 1.44 7.29 -2.39 -0.02 1.43 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.17 6.29 -2.38 -0.01 1.16 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.12 0.34 5.51 -2.38 -0.01 0.32 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.16 0.71 6.57 -2.39 -0.02 0.69 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 1.43 7.67 -2.38 -0.02 1.41 16 43 H 0.06 1.99 7.00 -2.39 -0.02 1.98 16 44 H 0.07 1.85 7.73 -2.39 -0.02 1.84 16 45 H 0.09 4.18 7.19 -2.38 -0.02 4.17 16 46 H 0.04 1.81 6.91 -2.39 -0.02 1.79 16 47 H 0.04 2.07 7.15 -2.39 -0.02 2.05 16 48 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 49 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.06 2.32 6.68 -2.39 -0.02 2.30 16 Total: -1.00 -82.74 387.69 2.55 -80.20 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.95 Total: 13.10 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 7.07 Total: 30.32 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -7.41 Total: -128.51 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.09 Total: -43.28 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -82.74 2.55 -80.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042772039.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.682 kcal (2) G-P(sol) polarization free energy of solvation -82.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds