Wall clock time and date at job start Tue Mar 31 2020 18:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00023 * 2 1 4 4 O 1.21283 * 119.99716 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99869 * 359.97438 * 3 2 1 6 6 H 1.09003 * 109.49824 * 299.93487 * 5 3 2 7 7 C 1.53038 * 109.49980 * 60.00113 * 5 3 2 8 8 C 1.53035 * 109.53710 * 181.31548 * 7 5 3 9 9 C 1.53188 * 109.31678 * 298.63524 * 8 7 5 10 10 N 1.46928 * 108.77682 * 54.63549 * 9 8 7 11 11 C 1.34769 * 120.63081 * 126.36750 * 10 9 8 12 12 O 1.21291 * 119.99718 * 180.02562 * 11 10 9 13 13 C 1.50697 * 120.00273 * 0.02562 * 11 10 9 14 14 C 1.53004 * 117.49736 * 248.74387 * 13 11 10 15 15 C 1.53001 * 117.50252 * 180.08424 * 13 11 10 16 16 C 1.46930 * 118.73743 * 306.39500 * 10 9 8 17 17 C 1.46507 * 120.00030 * 179.97438 * 2 1 3 18 18 C 1.53944 * 113.73842 * 42.55930 * 17 2 1 19 19 N 1.47817 * 86.03378 * 222.08325 * 18 17 2 20 20 C 1.36933 * 134.45564 * 204.64830 * 19 18 17 21 21 H 1.07995 * 120.00188 * 179.86362 * 20 19 18 22 22 C 1.38813 * 120.00064 * 359.85889 * 20 19 18 23 23 N 1.31621 * 119.99954 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00130 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47276 * 60.00223 * 24 22 20 26 26 H 1.48507 * 109.47354 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47166 * 299.99793 * 24 22 20 28 28 C 1.47578 * 91.05172 * 24.54506 * 19 18 17 29 29 H 1.09000 * 109.47493 * 265.04234 * 1 2 3 30 30 H 1.09001 * 109.46918 * 145.04154 * 1 2 3 31 31 H 1.09000 * 109.47403 * 25.03869 * 1 2 3 32 32 H 1.09001 * 109.46012 * 301.34086 * 7 5 3 33 33 H 1.08997 * 109.46007 * 61.30986 * 7 5 3 34 34 H 1.09002 * 109.50155 * 58.59037 * 8 7 5 35 35 H 1.09010 * 109.49798 * 178.68253 * 8 7 5 36 36 H 1.09000 * 109.59114 * 174.42227 * 9 8 7 37 37 H 1.09002 * 109.58521 * 294.85135 * 9 8 7 38 38 H 1.08997 * 115.55091 * 34.41322 * 13 11 10 39 39 H 1.08998 * 117.49947 * 359.97438 * 14 13 11 40 40 H 1.08999 * 117.49397 * 145.02215 * 14 13 11 41 41 H 1.08996 * 117.50336 * 214.97807 * 15 13 11 42 42 H 1.09007 * 117.49633 * 359.97287 * 15 13 11 43 43 H 1.09004 * 109.58594 * 293.82135 * 16 10 9 44 44 H 1.08992 * 109.58941 * 173.39249 * 16 10 9 45 45 H 1.08998 * 112.94026 * 174.14107 * 17 2 1 46 46 H 1.09007 * 113.76944 * 336.33851 * 18 17 2 47 47 H 1.09001 * 113.77309 * 107.74268 * 18 17 2 48 48 H 0.96996 * 119.99971 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.76856 * 221.15378 * 28 19 18 50 50 H 1.09005 * 113.76438 * 89.75366 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.7597 2.5308 -0.8913 7 6 0.5048 2.5543 1.2484 8 6 -0.2856 3.8647 1.2322 9 6 0.6904 5.0453 1.2504 10 7 1.6340 4.8960 0.1341 11 6 1.8113 5.8946 -0.7534 12 8 2.5930 5.7589 -1.6708 13 6 1.0384 7.1799 -0.6059 14 6 -0.0297 7.4865 -1.6577 15 6 1.2826 8.2745 -1.6466 16 6 2.3803 3.6371 0.0035 17 6 2.1975 -1.2688 0.0006 18 6 1.6084 -2.3249 -0.9521 19 7 1.8506 -3.2939 0.1376 20 6 2.0495 -4.6476 0.1905 21 1 2.2115 -5.1329 1.1416 22 6 2.0428 -5.3964 -0.9784 23 7 1.8457 -4.8050 -2.1376 24 14 2.3134 -7.2433 -0.9061 25 1 1.2527 -7.8668 -0.0746 26 1 2.2608 -7.8054 -2.2797 27 1 3.6423 -7.5258 -0.3069 28 6 1.7946 -2.2166 1.1447 29 1 -0.3634 -0.0888 1.0238 30 1 -0.3633 -0.8423 -0.5888 31 1 -0.3634 0.9311 -0.4349 32 1 -0.1877 1.7126 1.2604 33 1 1.1330 2.5204 2.1385 34 1 -0.8955 3.9107 0.3300 35 1 -0.9299 3.9118 2.1102 36 1 0.1376 5.9782 1.1392 37 1 1.2377 5.0525 2.1930 38 1 0.8407 7.4947 0.4187 39 1 -0.1730 6.7589 -2.4565 40 1 -0.9298 8.0035 -1.3250 41 1 1.2452 9.3095 -1.3067 42 1 2.0027 8.0652 -2.4377 43 1 3.0654 3.5295 0.8445 44 1 2.9425 3.6408 -0.9302 45 1 3.2747 -1.1375 -0.1020 46 1 0.5529 -2.1728 -1.1780 47 1 2.2140 -2.5012 -1.8411 48 1 1.8414 -5.3281 -2.9544 49 1 2.5486 -2.3066 1.9267 50 1 0.7940 -2.0325 1.5359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042772040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:35 Heat of formation + Delta-G solvation = 26.105312 kcal Electronic energy + Delta-G solvation = -29692.017238 eV Core-core repulsion = 25722.528610 eV Total energy + Delta-G solvation = -3969.488628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89565 -39.89098 -38.12411 -37.21185 -36.29868 -34.70188 -33.09891 -31.94322 -31.46105 -27.84470 -26.83785 -26.38856 -25.01385 -24.84712 -23.57036 -22.81607 -22.71493 -21.38027 -19.61138 -19.03967 -18.53687 -17.89595 -17.15064 -16.76232 -16.12383 -15.88216 -15.55227 -15.46260 -15.03741 -14.77138 -14.57696 -14.35190 -13.90491 -13.82043 -13.77746 -13.25462 -13.05028 -12.76542 -12.68090 -12.52710 -12.24796 -11.93950 -11.83274 -11.68439 -11.47565 -11.43754 -11.30755 -11.15316 -10.97593 -10.90071 -10.85176 -10.78687 -10.70074 -10.24467 -10.09746 -10.02468 -9.58302 -9.44850 -8.89265 -8.81820 -8.16472 -6.93891 -5.80754 -3.13894 2.22389 2.59459 2.80602 3.28877 3.39178 3.42961 3.44061 3.48726 4.08916 4.27712 4.39908 4.44146 4.49486 4.52273 4.57749 4.65774 4.70105 4.80694 5.01902 5.09248 5.17203 5.20271 5.25833 5.28402 5.34694 5.41158 5.44365 5.47480 5.50832 5.55025 5.61401 5.66800 5.72192 5.76066 5.80915 5.92873 5.99388 6.08313 6.12695 6.23417 6.42424 6.57281 6.72421 7.12547 7.17206 7.30874 7.49592 7.73401 7.92960 7.93893 8.40946 8.99945 9.66238 10.52918 11.36371 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.002198 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.140087 B =12734.824277 C =13012.060438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.518 3.482 4 O -0.543 6.543 5 C -0.120 4.120 6 H 0.099 0.901 7 C -0.125 4.125 8 C -0.132 4.132 9 C 0.104 3.896 10 N -0.609 5.609 11 C 0.543 3.457 12 O -0.537 6.537 13 C -0.196 4.196 14 C -0.152 4.152 15 C -0.149 4.149 16 C 0.133 3.867 17 C 0.090 3.910 18 C 0.155 3.845 19 N -0.606 5.606 20 C -0.224 4.224 21 H 0.081 0.919 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.110 3.890 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.033 0.967 47 H 0.077 0.923 48 H 0.255 0.745 49 H 0.046 0.954 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 25.949 6.910 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C 0.305 3.695 4 O -0.420 6.420 5 C -0.142 4.142 6 H 0.117 0.883 7 C -0.163 4.163 8 C -0.170 4.170 9 C -0.019 4.019 10 N -0.342 5.342 11 C 0.332 3.668 12 O -0.414 6.414 13 C -0.217 4.217 14 C -0.189 4.189 15 C -0.186 4.186 16 C 0.010 3.990 17 C -0.014 4.014 18 C 0.029 3.971 19 N -0.333 5.333 20 C -0.352 4.352 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.017 4.017 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.050 0.950 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.067 25.514 6.274 27.484 hybrid contribution -0.231 -1.193 0.189 1.230 sum -8.298 24.320 6.463 26.497 Atomic orbital electron populations 1.22006 0.80216 1.03216 1.01803 1.47988 1.06789 1.06191 1.71864 1.20342 0.87857 0.85007 0.76301 1.90699 1.13869 1.87334 1.50131 1.21628 0.98330 0.93271 1.00953 0.88305 1.21817 0.98851 0.98745 0.96865 1.21914 0.97766 0.94191 1.03150 1.21834 0.91100 0.99445 0.89488 1.48031 1.42861 1.15352 1.27933 1.19681 0.81987 0.83988 0.81171 1.90720 1.36898 1.81243 1.32553 1.22217 1.05282 0.96146 0.98025 1.22953 0.93059 1.03229 0.99677 1.22980 0.99623 0.95531 1.00480 1.21360 0.92567 0.80118 1.04916 1.24049 0.98059 0.79698 0.99572 1.22687 0.97350 0.83365 0.93672 1.45688 1.83110 1.02389 1.02064 1.18939 1.42446 0.80296 0.93491 0.90094 1.24812 1.01998 0.98318 0.95223 1.69802 1.55267 1.34589 0.97079 0.86161 0.78124 0.84572 0.76657 1.21140 1.21508 1.20972 1.22938 0.97852 0.87500 0.93421 0.92440 0.90038 0.91211 0.89517 0.91020 0.91107 0.90073 0.89394 0.91092 0.85779 0.88184 0.87739 0.87909 0.87357 0.90346 0.88226 0.86566 0.94989 0.90493 0.93461 0.93569 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 7.90 59.84 0.47 1.32 16 2 N -0.60 -9.39 3.10 -175.75 -0.54 -9.94 16 3 C 0.52 8.12 7.08 -10.99 -0.08 8.04 16 4 O -0.54 -10.64 15.38 5.56 0.09 -10.55 16 5 C -0.12 -1.35 1.86 -91.65 -0.17 -1.53 16 6 H 0.10 1.07 7.42 -51.93 -0.39 0.69 16 7 C -0.13 -1.03 4.77 -26.69 -0.13 -1.16 16 8 C -0.13 -0.76 6.08 -26.62 -0.16 -0.92 16 9 C 0.10 0.64 6.30 -3.71 -0.02 0.62 16 10 N -0.61 -6.03 2.97 -172.76 -0.51 -6.55 16 11 C 0.54 6.16 7.48 -10.99 -0.08 6.08 16 12 O -0.54 -8.42 15.67 5.55 0.09 -8.33 16 13 C -0.20 -1.45 4.96 -91.77 -0.45 -1.91 16 14 C -0.15 -0.94 10.24 -26.69 -0.27 -1.21 16 15 C -0.15 -1.05 10.05 -26.69 -0.27 -1.32 16 16 C 0.13 1.64 5.06 -3.71 -0.02 1.62 16 17 C 0.09 1.78 4.42 -70.15 -0.31 1.47 16 18 C 0.16 3.63 7.04 -2.84 -0.02 3.61 16 19 N -0.61 -15.56 3.70 -177.89 -0.66 -16.22 16 20 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -27.31 11.39 55.49 0.63 -26.68 16 24 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.11 2.26 8.53 -2.97 -0.03 2.24 16 29 H 0.06 0.60 7.09 -51.93 -0.37 0.23 16 30 H 0.08 1.11 5.83 -51.93 -0.30 0.81 16 31 H 0.07 0.65 5.65 -51.93 -0.29 0.35 16 32 H 0.09 0.68 4.59 -51.93 -0.24 0.44 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 36 H 0.09 0.37 5.68 -51.93 -0.29 0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 0.62 6.82 -51.93 -0.35 0.27 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.97 7.67 -51.92 -0.40 0.58 16 43 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 44 H 0.10 1.51 7.00 -51.93 -0.36 1.15 16 45 H 0.12 2.56 7.19 -51.93 -0.37 2.18 16 46 H 0.03 0.73 5.94 -51.92 -0.31 0.42 16 47 H 0.08 2.05 7.16 -51.93 -0.37 1.67 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.04 0.66 7.38 -51.93 -0.38 0.28 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -35.28 385.71 -9.70 -44.98 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.78 Total: 0.12 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -1.80 Total: 10.22 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -1.08 Total: -59.38 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.17 Total: -18.88 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.28 -9.70 -44.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042772040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.087 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds