Wall clock time and date at job start Tue Mar 31 2020 18:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00023 * 2 1 4 4 O 1.21283 * 119.99716 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99869 * 359.97438 * 3 2 1 6 6 H 1.09003 * 109.49824 * 299.93487 * 5 3 2 7 7 C 1.53038 * 109.49980 * 60.00113 * 5 3 2 8 8 C 1.53035 * 109.53710 * 181.31548 * 7 5 3 9 9 C 1.53188 * 109.31678 * 298.63524 * 8 7 5 10 10 N 1.46928 * 108.77682 * 54.63549 * 9 8 7 11 11 C 1.34769 * 120.63081 * 126.36750 * 10 9 8 12 12 O 1.21291 * 119.99718 * 180.02562 * 11 10 9 13 13 C 1.50697 * 120.00273 * 0.02562 * 11 10 9 14 14 C 1.53004 * 117.49736 * 248.74387 * 13 11 10 15 15 C 1.53001 * 117.50252 * 180.08424 * 13 11 10 16 16 C 1.46930 * 118.73743 * 306.39500 * 10 9 8 17 17 C 1.46507 * 120.00030 * 179.97438 * 2 1 3 18 18 C 1.53944 * 113.73842 * 42.55930 * 17 2 1 19 19 N 1.47817 * 86.03378 * 222.08325 * 18 17 2 20 20 C 1.36933 * 134.45564 * 204.64830 * 19 18 17 21 21 H 1.07995 * 120.00188 * 179.86362 * 20 19 18 22 22 C 1.38813 * 120.00064 * 359.85889 * 20 19 18 23 23 N 1.31621 * 119.99954 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00130 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47276 * 60.00223 * 24 22 20 26 26 H 1.48507 * 109.47354 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47166 * 299.99793 * 24 22 20 28 28 C 1.47578 * 91.05172 * 24.54506 * 19 18 17 29 29 H 1.09000 * 109.47493 * 265.04234 * 1 2 3 30 30 H 1.09001 * 109.46918 * 145.04154 * 1 2 3 31 31 H 1.09000 * 109.47403 * 25.03869 * 1 2 3 32 32 H 1.09001 * 109.46012 * 301.34086 * 7 5 3 33 33 H 1.08997 * 109.46007 * 61.30986 * 7 5 3 34 34 H 1.09002 * 109.50155 * 58.59037 * 8 7 5 35 35 H 1.09010 * 109.49798 * 178.68253 * 8 7 5 36 36 H 1.09000 * 109.59114 * 174.42227 * 9 8 7 37 37 H 1.09002 * 109.58521 * 294.85135 * 9 8 7 38 38 H 1.08997 * 115.55091 * 34.41322 * 13 11 10 39 39 H 1.08998 * 117.49947 * 359.97438 * 14 13 11 40 40 H 1.08999 * 117.49397 * 145.02215 * 14 13 11 41 41 H 1.08996 * 117.50336 * 214.97807 * 15 13 11 42 42 H 1.09007 * 117.49633 * 359.97287 * 15 13 11 43 43 H 1.09004 * 109.58594 * 293.82135 * 16 10 9 44 44 H 1.08992 * 109.58941 * 173.39249 * 16 10 9 45 45 H 1.08998 * 112.94026 * 174.14107 * 17 2 1 46 46 H 1.09007 * 113.76944 * 336.33851 * 18 17 2 47 47 H 1.09001 * 113.77309 * 107.74268 * 18 17 2 48 48 H 0.96996 * 119.99971 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.76856 * 221.15378 * 28 19 18 50 50 H 1.09005 * 113.76438 * 89.75366 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.7597 2.5308 -0.8913 7 6 0.5048 2.5543 1.2484 8 6 -0.2856 3.8647 1.2322 9 6 0.6904 5.0453 1.2504 10 7 1.6340 4.8960 0.1341 11 6 1.8113 5.8946 -0.7534 12 8 2.5930 5.7589 -1.6708 13 6 1.0384 7.1799 -0.6059 14 6 -0.0297 7.4865 -1.6577 15 6 1.2826 8.2745 -1.6466 16 6 2.3803 3.6371 0.0035 17 6 2.1975 -1.2688 0.0006 18 6 1.6084 -2.3249 -0.9521 19 7 1.8506 -3.2939 0.1376 20 6 2.0495 -4.6476 0.1905 21 1 2.2115 -5.1329 1.1416 22 6 2.0428 -5.3964 -0.9784 23 7 1.8457 -4.8050 -2.1376 24 14 2.3134 -7.2433 -0.9061 25 1 1.2527 -7.8668 -0.0746 26 1 2.2608 -7.8054 -2.2797 27 1 3.6423 -7.5258 -0.3069 28 6 1.7946 -2.2166 1.1447 29 1 -0.3634 -0.0888 1.0238 30 1 -0.3633 -0.8423 -0.5888 31 1 -0.3634 0.9311 -0.4349 32 1 -0.1877 1.7126 1.2604 33 1 1.1330 2.5204 2.1385 34 1 -0.8955 3.9107 0.3300 35 1 -0.9299 3.9118 2.1102 36 1 0.1376 5.9782 1.1392 37 1 1.2377 5.0525 2.1930 38 1 0.8407 7.4947 0.4187 39 1 -0.1730 6.7589 -2.4565 40 1 -0.9298 8.0035 -1.3250 41 1 1.2452 9.3095 -1.3067 42 1 2.0027 8.0652 -2.4377 43 1 3.0654 3.5295 0.8445 44 1 2.9425 3.6408 -0.9302 45 1 3.2747 -1.1375 -0.1020 46 1 0.5529 -2.1728 -1.1780 47 1 2.2140 -2.5012 -1.8411 48 1 1.8414 -5.3281 -2.9544 49 1 2.5486 -2.3066 1.9267 50 1 0.7940 -2.0325 1.5359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042772040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:34 Heat of formation + Delta-G solvation = 2.547903 kcal Electronic energy + Delta-G solvation = -29693.038764 eV Core-core repulsion = 25722.528610 eV Total energy + Delta-G solvation = -3970.510154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.89568 -41.02964 -39.54033 -38.26860 -36.99688 -36.10117 -34.35318 -33.59480 -32.26613 -29.67452 -28.05126 -27.27257 -26.65918 -26.01186 -24.76046 -23.82791 -23.29467 -22.28948 -21.01907 -19.97516 -19.75014 -18.88981 -18.66706 -18.17484 -17.31001 -17.01713 -16.84081 -16.45534 -16.26059 -15.90485 -15.70680 -15.38585 -15.19537 -14.89706 -14.79979 -14.33603 -14.08097 -13.84095 -13.74203 -13.57866 -13.43383 -13.37513 -13.16577 -12.99316 -12.81510 -12.57708 -12.51939 -12.42618 -12.15112 -12.05786 -12.01703 -11.74745 -11.62265 -11.56291 -11.48133 -11.36174 -10.92343 -10.88227 -10.67743 -9.72687 -9.57402 -8.98651 -7.94891 -5.29455 1.41985 1.44135 1.48171 1.54091 1.54275 1.72268 2.10203 2.47358 2.92752 3.23276 3.34864 3.40426 3.50769 3.70384 3.77710 3.83049 3.85946 3.99665 4.03546 4.08745 4.14456 4.22182 4.26685 4.32153 4.44211 4.53654 4.61011 4.66305 4.75093 4.75650 4.77313 4.79193 4.80799 4.91092 4.93028 4.95552 5.06124 5.11790 5.15741 5.18038 5.21994 5.25214 5.40876 5.44097 5.47069 5.67568 5.86319 6.36695 6.43348 6.85955 7.09337 7.13862 7.55163 8.48374 9.22039 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.002198 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.140087 B =12734.824277 C =13012.060438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.595 5.595 3 C 0.513 3.487 4 O -0.591 6.591 5 C -0.104 4.104 6 H 0.109 0.891 7 C -0.122 4.122 8 C -0.124 4.124 9 C 0.095 3.905 10 N -0.604 5.604 11 C 0.531 3.469 12 O -0.596 6.596 13 C -0.195 4.195 14 C -0.136 4.136 15 C -0.159 4.159 16 C 0.137 3.863 17 C 0.112 3.888 18 C 0.158 3.842 19 N -0.637 5.637 20 C -0.236 4.236 21 H 0.088 0.912 22 C -0.068 4.068 23 N -0.955 5.955 24 Si 0.983 3.017 25 H -0.272 1.272 26 H -0.295 1.295 27 H -0.278 1.278 28 C 0.120 3.880 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.160 0.840 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.034 0.966 48 H 0.250 0.750 49 H 0.050 0.950 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 27.816 9.638 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.326 5.326 3 C 0.303 3.697 4 O -0.471 6.471 5 C -0.126 4.126 6 H 0.126 0.874 7 C -0.159 4.159 8 C -0.162 4.162 9 C -0.025 4.025 10 N -0.335 5.335 11 C 0.322 3.678 12 O -0.477 6.477 13 C -0.216 4.216 14 C -0.173 4.173 15 C -0.197 4.197 16 C 0.013 3.987 17 C 0.007 3.993 18 C 0.032 3.968 19 N -0.365 5.365 20 C -0.364 4.364 21 H 0.106 0.894 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.811 3.189 25 H -0.198 1.198 26 H -0.221 1.221 27 H -0.204 1.204 28 C -0.005 4.005 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.177 0.823 39 H 0.101 0.899 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.479 27.414 9.072 31.073 hybrid contribution 0.854 -1.705 -0.647 2.014 sum -10.625 25.708 8.425 29.065 Atomic orbital electron populations 1.22298 0.77346 1.04344 1.03596 1.47944 1.08375 1.04639 1.71631 1.21163 0.87528 0.86212 0.74845 1.90681 1.16288 1.88039 1.52115 1.21560 0.97899 0.89694 1.03424 0.87351 1.21872 0.98507 1.01105 0.94430 1.21924 0.97395 0.91861 1.04997 1.22226 0.90741 1.01338 0.88228 1.48141 1.42825 1.13859 1.28687 1.20532 0.81557 0.85357 0.80366 1.90696 1.39562 1.82431 1.35059 1.22287 1.05390 0.93839 1.00061 1.23053 0.93666 1.02234 0.98338 1.23040 0.99840 0.96936 0.99864 1.21056 0.93014 0.82232 1.02405 1.23283 0.96725 0.81304 0.97967 1.22556 0.97231 0.84533 0.92472 1.46008 1.83520 1.02602 1.04327 1.19361 1.41445 0.81782 0.93810 0.89450 1.25699 1.02553 1.02876 0.94942 1.70006 1.56917 1.35910 0.97469 0.85087 0.78353 0.79166 0.76328 1.19790 1.22080 1.20364 1.23032 0.99347 0.85395 0.92775 0.89666 0.91650 0.87898 0.88253 0.91311 0.90497 0.86846 0.86378 0.90101 0.82288 0.89920 0.84270 0.85219 0.90446 0.91401 0.92265 0.89418 0.94019 0.94796 0.94161 0.93130 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 7.90 127.77 1.01 2.41 16 2 N -0.59 -18.39 3.10 -828.35 -2.56 -20.95 16 3 C 0.51 16.22 7.08 87.66 0.62 16.84 16 4 O -0.59 -24.41 15.38 -3.04 -0.05 -24.46 16 5 C -0.10 -2.24 1.86 -11.46 -0.02 -2.26 16 6 H 0.11 2.17 7.42 -2.39 -0.02 2.15 16 7 C -0.12 -1.57 4.77 30.62 0.15 -1.42 16 8 C -0.12 -0.80 6.08 30.67 0.19 -0.62 16 9 C 0.10 0.79 6.30 86.36 0.54 1.34 16 10 N -0.60 -11.22 2.97 -818.89 -2.43 -13.66 16 11 C 0.53 11.90 7.48 87.66 0.66 12.55 16 12 O -0.60 -19.95 15.67 -3.06 -0.05 -20.00 16 13 C -0.20 -2.40 4.96 -11.54 -0.06 -2.46 16 14 C -0.14 -1.30 10.24 30.62 0.31 -0.98 16 15 C -0.16 -2.01 10.05 30.62 0.31 -1.71 16 16 C 0.14 3.47 5.06 86.36 0.44 3.91 16 17 C 0.11 4.57 4.42 46.75 0.21 4.77 16 18 C 0.16 7.66 7.04 86.44 0.61 8.27 16 19 N -0.64 -33.18 3.70 -716.73 -2.65 -35.83 16 20 C -0.24 -13.37 10.70 84.03 0.90 -12.47 16 21 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 22 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 23 N -0.95 -58.51 11.39 21.65 0.25 -58.26 16 24 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 C 0.12 4.86 8.53 86.48 0.74 5.60 16 29 H 0.09 1.41 7.09 -2.39 -0.02 1.39 16 30 H 0.06 1.66 5.83 -2.39 -0.01 1.65 16 31 H 0.10 1.53 5.65 -2.39 -0.01 1.52 16 32 H 0.10 1.06 4.59 -2.39 -0.01 1.05 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 36 H 0.12 0.32 5.68 -2.39 -0.01 0.31 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.16 0.82 6.82 -2.39 -0.02 0.80 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.14 0.40 8.14 -2.39 -0.02 0.39 16 41 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.47 7.67 -2.38 -0.02 1.46 16 43 H 0.07 1.83 7.96 -2.39 -0.02 1.81 16 44 H 0.06 1.98 7.00 -2.39 -0.02 1.96 16 45 H 0.09 4.09 7.19 -2.39 -0.02 4.07 16 46 H 0.04 1.94 5.94 -2.38 -0.01 1.92 16 47 H 0.03 1.91 7.16 -2.39 -0.02 1.90 16 48 H 0.25 14.89 8.31 -92.71 -0.77 14.11 16 49 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.07 2.28 7.38 -2.38 -0.02 2.27 16 Total: -1.00 -84.30 385.71 2.54 -81.76 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.95 Total: 12.94 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: 7.06 Total: 30.32 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -7.41 Total: -128.70 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.09 Total: -44.46 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -84.30 2.54 -81.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042772040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.310 kcal (2) G-P(sol) polarization free energy of solvation -84.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds