Wall clock time and date at job start Tue Mar 31 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34782 * 119.99705 * 2 1 4 4 O 1.21284 * 120.00135 * 185.48815 * 3 2 1 5 5 C 1.50705 * 120.00139 * 5.49856 * 3 2 1 6 6 C 1.53001 * 110.43248 * 208.97740 * 5 3 2 7 7 C 1.54883 * 110.48378 * 298.29563 * 6 5 3 8 8 C 1.55241 * 102.58403 * 156.67948 * 7 6 5 9 9 C 1.54259 * 104.23448 * 322.08579 * 8 7 6 10 10 C 1.53882 * 106.59758 * 23.61077 * 9 8 7 11 11 C 1.54629 * 110.59992 * 86.35342 * 5 3 2 12 12 C 1.54480 * 101.76682 * 266.06521 * 11 5 3 13 13 N 1.46761 * 105.47220 * 334.58720 * 12 11 5 14 14 C 1.34412 * 111.30485 * 17.01501 * 13 12 11 15 15 O 1.21285 * 124.94559 * 179.62882 * 14 13 12 16 16 C 1.46494 * 120.00240 * 180.02562 * 2 1 3 17 17 C 1.53944 * 113.74159 * 36.67734 * 16 2 1 18 18 N 1.47575 * 86.11696 * 222.04563 * 17 16 2 19 19 C 1.36939 * 134.49781 * 204.64198 * 18 17 16 20 20 H 1.07990 * 120.00504 * 179.97438 * 19 18 17 21 21 C 1.38815 * 119.99481 * 359.97438 * 19 18 17 22 22 N 1.31625 * 120.00086 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47077 * 90.00132 * 23 21 19 25 25 H 1.48501 * 109.46629 * 210.00079 * 23 21 19 26 26 H 1.48500 * 109.46904 * 329.99821 * 23 21 19 27 27 C 1.47579 * 91.01561 * 24.63813 * 18 17 16 28 28 H 1.08998 * 109.46957 * 63.21552 * 1 2 3 29 29 H 1.09004 * 109.46661 * 183.21505 * 1 2 3 30 30 H 1.09002 * 109.46912 * 303.21328 * 1 2 3 31 31 H 1.09001 * 110.43301 * 175.75913 * 6 5 3 32 32 H 1.08995 * 110.76153 * 275.06932 * 7 6 5 33 33 H 1.08999 * 110.75884 * 38.44575 * 7 6 5 34 34 H 1.09006 * 110.46850 * 203.39521 * 8 7 6 35 35 H 1.09002 * 110.58472 * 80.83666 * 8 7 6 36 36 H 1.09005 * 110.03592 * 264.32892 * 9 8 7 37 37 H 1.09000 * 110.07801 * 142.91376 * 9 8 7 38 38 H 1.09004 * 110.03162 * 240.71840 * 10 9 8 39 39 H 1.08997 * 110.06972 * 119.30570 * 10 9 8 40 40 H 1.09002 * 110.96849 * 24.18679 * 11 5 3 41 41 H 1.08998 * 110.96756 * 147.94450 * 11 5 3 42 42 H 1.08999 * 110.24452 * 215.58708 * 12 11 5 43 43 H 1.09000 * 110.24491 * 93.58740 * 12 11 5 44 44 H 0.96999 * 124.34499 * 197.03700 * 13 12 11 45 45 H 1.09009 * 112.94485 * 168.40745 * 16 2 1 46 46 H 1.09003 * 113.76781 * 336.34367 * 17 16 2 47 47 H 1.09002 * 113.77219 * 107.74129 * 17 16 2 48 48 H 0.97004 * 119.99852 * 179.97438 * 22 21 19 49 49 H 1.09003 * 113.77329 * 221.05639 * 27 18 17 50 50 H 1.09005 * 113.76861 * 89.65861 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3475 1.1698 -0.1005 5 6 1.3905 2.4694 0.1251 6 6 2.1513 3.5928 -0.5821 7 6 3.5402 3.8014 0.0708 8 6 4.3541 4.4678 -1.0709 9 6 3.8707 3.7520 -2.3490 10 6 2.4701 3.1956 -2.0382 11 6 1.1607 2.8241 1.6125 12 6 -0.2443 2.2332 1.8638 13 7 -0.8998 2.2097 0.5509 14 6 -0.0048 2.3349 -0.4441 15 8 -0.2762 2.3400 -1.6262 16 6 2.1975 -1.2686 -0.0006 17 6 1.5287 -2.3701 -0.8428 18 7 1.8683 -3.2838 0.2653 19 6 2.0740 -4.6338 0.3673 20 1 2.3191 -5.0720 1.3234 21 6 1.9673 -5.4391 -0.7583 22 7 1.6689 -4.9050 -1.9238 23 14 2.2471 -7.2808 -0.6191 24 1 0.9589 -7.9559 -0.3193 25 1 2.7900 -7.7972 -1.9013 26 1 3.2149 -7.5532 0.4737 27 6 1.8973 -2.1583 1.2193 28 1 -0.3633 0.4631 -0.9174 29 1 -0.3633 -1.0261 0.0576 30 1 -0.3633 0.5629 0.8598 31 1 1.5750 4.5176 -0.5564 32 1 3.4661 4.4637 0.9333 33 1 3.9818 2.8457 0.3532 34 1 5.4217 4.3051 -0.9231 35 1 4.1356 5.5344 -1.1251 36 1 4.5492 2.9365 -2.5996 37 1 3.8162 4.4596 -3.1763 38 1 2.4689 2.1101 -2.1380 39 1 1.7354 3.6332 -2.7140 40 1 1.9052 2.3440 2.2475 41 1 1.1619 3.9040 1.7606 42 1 -0.8024 2.8672 2.5527 43 1 -0.1624 1.2221 2.2627 44 1 -1.8561 2.1162 0.4183 45 1 3.2616 -1.1449 -0.2022 46 1 0.4571 -2.2273 -0.9816 47 1 2.0534 -2.5923 -1.7720 48 1 1.5947 -5.4677 -2.7104 49 1 2.7163 -2.2113 1.9367 50 1 0.9339 -1.9531 1.6862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042971527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:25 Heat of formation + Delta-G solvation = 40.236206 kcal Electronic energy + Delta-G solvation = -31822.790439 eV Core-core repulsion = 27853.914572 eV Total energy + Delta-G solvation = -3968.875867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26385 -39.08636 -38.37735 -36.98411 -36.62177 -34.23125 -32.48076 -31.93693 -29.14370 -28.44868 -27.83180 -26.86788 -26.19027 -24.82872 -23.74402 -22.40392 -21.54247 -20.83492 -20.07543 -19.00013 -18.70768 -17.68363 -17.06639 -16.78770 -16.39591 -15.96793 -15.39372 -15.06853 -14.95664 -14.78663 -14.39969 -14.02176 -13.92469 -13.67647 -13.48909 -13.42539 -13.03014 -12.65132 -12.59272 -12.41028 -11.86188 -11.65710 -11.53389 -11.33942 -11.29516 -11.18102 -11.09074 -10.92880 -10.89506 -10.80846 -10.70850 -10.64875 -10.25914 -10.22818 -10.06650 -9.85126 -9.58313 -9.29571 -9.04957 -8.81700 -8.10649 -6.93595 -5.80339 -3.14021 2.29304 2.67226 3.05286 3.18355 3.38162 3.42789 3.45113 3.97792 4.15324 4.30904 4.44156 4.58849 4.64988 4.81974 4.86940 4.94754 5.12181 5.17073 5.29044 5.38435 5.43477 5.47494 5.49182 5.50356 5.58015 5.67772 5.69178 5.74168 5.79659 5.83073 5.92881 6.01893 6.07071 6.08382 6.13846 6.23707 6.38325 6.42247 6.48422 6.52299 6.54183 6.60014 6.70716 6.79903 7.18409 7.30239 7.50568 7.71605 7.93181 7.99724 8.36506 9.00028 9.66380 10.52901 11.36562 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.003497 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.285188 B = 8004.326328 C = 8651.345130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.589 5.589 3 C 0.538 3.462 4 O -0.522 6.522 5 C -0.109 4.109 6 C -0.055 4.055 7 C -0.136 4.136 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.111 4.111 11 C -0.116 4.116 12 C 0.091 3.909 13 N -0.739 5.739 14 C 0.545 3.455 15 O -0.513 6.513 16 C 0.089 3.911 17 C 0.156 3.844 18 N -0.605 5.605 19 C -0.226 4.226 20 H 0.082 0.918 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.110 3.890 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.414 0.586 45 H 0.117 0.883 46 H 0.032 0.968 47 H 0.077 0.923 48 H 0.255 0.745 49 H 0.047 0.953 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 21.313 8.069 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.321 5.321 3 C 0.324 3.676 4 O -0.399 6.399 5 C -0.116 4.116 6 C -0.074 4.074 7 C -0.173 4.173 8 C -0.156 4.156 9 C -0.157 4.157 10 C -0.149 4.149 11 C -0.154 4.154 12 C -0.033 4.033 13 N -0.398 5.398 14 C 0.331 3.669 15 O -0.388 6.388 16 C -0.015 4.015 17 C 0.030 3.970 18 N -0.331 5.331 19 C -0.353 4.353 20 H 0.100 0.900 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.205 1.205 27 C -0.017 4.017 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.254 0.746 45 H 0.135 0.865 46 H 0.049 0.951 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.849 20.952 7.256 22.355 hybrid contribution -0.738 -1.202 -0.023 1.411 sum -3.587 19.749 7.233 21.336 Atomic orbital electron populations 1.23579 0.80454 1.05606 1.03706 1.48057 1.06750 1.06019 1.71229 1.19587 0.87617 0.83813 0.76604 1.90574 1.13540 1.85821 1.49958 1.21727 0.94594 0.97105 0.98219 1.21683 0.96036 0.94264 0.95439 1.23094 0.94041 1.03421 0.96731 1.22311 0.99626 0.98566 0.95113 1.22065 0.96810 0.99565 0.97290 1.22119 0.96301 1.01726 0.94755 1.22666 0.96563 1.02912 0.93233 1.22243 0.93668 1.02237 0.85112 1.46521 1.10274 1.75602 1.07363 1.20157 0.87368 0.73538 0.85797 1.90804 1.82801 1.49709 1.15448 1.24083 0.98091 0.79854 0.99426 1.22651 0.96538 0.83606 0.94175 1.45644 1.81096 1.02081 1.04306 1.18983 1.41279 0.80153 0.94900 0.90031 1.24814 1.01728 0.98271 0.95415 1.69824 1.53768 1.34242 0.98716 0.86093 0.77775 0.84717 0.77005 1.21581 1.21542 1.20518 1.22963 0.97953 0.87321 0.93472 0.90813 0.89715 0.88550 0.90519 0.92551 0.86881 0.91921 0.92521 0.91734 0.92553 0.91426 0.91808 0.88404 0.88679 0.89448 0.89772 0.74572 0.86543 0.95063 0.90484 0.93491 0.93490 0.94915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 7.47 59.85 0.45 0.58 16 2 N -0.59 -9.70 3.09 -175.75 -0.54 -10.24 16 3 C 0.54 8.37 5.13 -10.98 -0.06 8.31 16 4 O -0.52 -9.34 12.24 5.55 0.07 -9.28 16 5 C -0.11 -1.30 0.32 -155.66 -0.05 -1.35 16 6 C -0.05 -0.65 2.08 -88.97 -0.18 -0.84 16 7 C -0.14 -1.53 5.50 -24.55 -0.14 -1.67 16 8 C -0.12 -1.29 6.84 -24.88 -0.17 -1.46 16 9 C -0.12 -1.49 6.80 -25.61 -0.17 -1.67 16 10 C -0.11 -1.57 4.80 -25.61 -0.12 -1.69 16 11 C -0.12 -0.90 5.65 -25.10 -0.14 -1.05 16 12 C 0.09 0.57 6.84 -3.12 -0.02 0.55 16 13 N -0.74 -6.18 4.31 -59.20 -0.26 -6.43 16 14 C 0.54 6.76 4.21 -10.86 -0.05 6.72 16 15 O -0.51 -8.26 15.52 5.55 0.09 -8.17 16 16 C 0.09 1.77 4.41 -70.16 -0.31 1.47 16 17 C 0.16 3.75 6.87 -2.98 -0.02 3.73 16 18 N -0.60 -15.53 3.70 -178.11 -0.66 -16.19 16 19 C -0.23 -6.33 10.70 -15.06 -0.16 -6.49 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 22 N -0.92 -27.46 11.38 55.49 0.63 -26.83 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 C 0.11 2.25 8.45 -2.98 -0.03 2.22 16 28 H 0.07 1.15 5.03 -51.93 -0.26 0.89 16 29 H 0.08 1.35 5.70 -51.93 -0.30 1.05 16 30 H 0.10 1.04 2.38 -56.94 -0.14 0.91 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.11 1.57 5.01 -51.93 -0.26 1.31 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.16 6.23 -51.93 -0.32 0.84 16 39 H 0.06 0.90 7.98 -51.93 -0.41 0.49 16 40 H 0.10 0.77 7.90 -51.93 -0.41 0.36 16 41 H 0.09 0.56 7.91 -51.93 -0.41 0.15 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.55 6.70 -51.93 -0.35 0.20 16 44 H 0.41 2.73 8.96 -40.82 -0.37 2.37 16 45 H 0.12 2.52 7.22 -51.92 -0.38 2.14 16 46 H 0.03 0.76 6.10 -51.93 -0.32 0.44 16 47 H 0.08 2.10 7.15 -51.93 -0.37 1.73 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.03 0.62 7.49 -51.93 -0.39 0.24 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -33.90 365.76 -9.06 -42.96 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.61 Total: 4.43 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.27 Total: 7.11 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.83 Total: -59.69 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.15 Total: -17.45 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.90 -9.06 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042971527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.193 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds