Wall clock time and date at job start Tue Mar 31 2020 18:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34782 * 119.99705 * 2 1 4 4 O 1.21284 * 120.00135 * 185.48815 * 3 2 1 5 5 C 1.50705 * 120.00139 * 5.49856 * 3 2 1 6 6 C 1.53001 * 110.43248 * 208.97740 * 5 3 2 7 7 C 1.54883 * 110.48378 * 298.29563 * 6 5 3 8 8 C 1.55241 * 102.58403 * 156.67948 * 7 6 5 9 9 C 1.54259 * 104.23448 * 322.08579 * 8 7 6 10 10 C 1.53882 * 106.59758 * 23.61077 * 9 8 7 11 11 C 1.54629 * 110.59992 * 86.35342 * 5 3 2 12 12 C 1.54480 * 101.76682 * 266.06521 * 11 5 3 13 13 N 1.46761 * 105.47220 * 334.58720 * 12 11 5 14 14 C 1.34412 * 111.30485 * 17.01501 * 13 12 11 15 15 O 1.21285 * 124.94559 * 179.62882 * 14 13 12 16 16 C 1.46494 * 120.00240 * 180.02562 * 2 1 3 17 17 C 1.53944 * 113.74159 * 36.67734 * 16 2 1 18 18 N 1.47575 * 86.11696 * 222.04563 * 17 16 2 19 19 C 1.36939 * 134.49781 * 204.64198 * 18 17 16 20 20 H 1.07990 * 120.00504 * 179.97438 * 19 18 17 21 21 C 1.38815 * 119.99481 * 359.97438 * 19 18 17 22 22 N 1.31625 * 120.00086 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47077 * 90.00132 * 23 21 19 25 25 H 1.48501 * 109.46629 * 210.00079 * 23 21 19 26 26 H 1.48500 * 109.46904 * 329.99821 * 23 21 19 27 27 C 1.47579 * 91.01561 * 24.63813 * 18 17 16 28 28 H 1.08998 * 109.46957 * 63.21552 * 1 2 3 29 29 H 1.09004 * 109.46661 * 183.21505 * 1 2 3 30 30 H 1.09002 * 109.46912 * 303.21328 * 1 2 3 31 31 H 1.09001 * 110.43301 * 175.75913 * 6 5 3 32 32 H 1.08995 * 110.76153 * 275.06932 * 7 6 5 33 33 H 1.08999 * 110.75884 * 38.44575 * 7 6 5 34 34 H 1.09006 * 110.46850 * 203.39521 * 8 7 6 35 35 H 1.09002 * 110.58472 * 80.83666 * 8 7 6 36 36 H 1.09005 * 110.03592 * 264.32892 * 9 8 7 37 37 H 1.09000 * 110.07801 * 142.91376 * 9 8 7 38 38 H 1.09004 * 110.03162 * 240.71840 * 10 9 8 39 39 H 1.08997 * 110.06972 * 119.30570 * 10 9 8 40 40 H 1.09002 * 110.96849 * 24.18679 * 11 5 3 41 41 H 1.08998 * 110.96756 * 147.94450 * 11 5 3 42 42 H 1.08999 * 110.24452 * 215.58708 * 12 11 5 43 43 H 1.09000 * 110.24491 * 93.58740 * 12 11 5 44 44 H 0.96999 * 124.34499 * 197.03700 * 13 12 11 45 45 H 1.09009 * 112.94485 * 168.40745 * 16 2 1 46 46 H 1.09003 * 113.76781 * 336.34367 * 17 16 2 47 47 H 1.09002 * 113.77219 * 107.74129 * 17 16 2 48 48 H 0.97004 * 119.99852 * 179.97438 * 22 21 19 49 49 H 1.09003 * 113.77329 * 221.05639 * 27 18 17 50 50 H 1.09005 * 113.76861 * 89.65861 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3475 1.1698 -0.1005 5 6 1.3905 2.4694 0.1251 6 6 2.1513 3.5928 -0.5821 7 6 3.5402 3.8014 0.0708 8 6 4.3541 4.4678 -1.0709 9 6 3.8707 3.7520 -2.3490 10 6 2.4701 3.1956 -2.0382 11 6 1.1607 2.8241 1.6125 12 6 -0.2443 2.2332 1.8638 13 7 -0.8998 2.2097 0.5509 14 6 -0.0048 2.3349 -0.4441 15 8 -0.2762 2.3400 -1.6262 16 6 2.1975 -1.2686 -0.0006 17 6 1.5287 -2.3701 -0.8428 18 7 1.8683 -3.2838 0.2653 19 6 2.0740 -4.6338 0.3673 20 1 2.3191 -5.0720 1.3234 21 6 1.9673 -5.4391 -0.7583 22 7 1.6689 -4.9050 -1.9238 23 14 2.2471 -7.2808 -0.6191 24 1 0.9589 -7.9559 -0.3193 25 1 2.7900 -7.7972 -1.9013 26 1 3.2149 -7.5532 0.4737 27 6 1.8973 -2.1583 1.2193 28 1 -0.3633 0.4631 -0.9174 29 1 -0.3633 -1.0261 0.0576 30 1 -0.3633 0.5629 0.8598 31 1 1.5750 4.5176 -0.5564 32 1 3.4661 4.4637 0.9333 33 1 3.9818 2.8457 0.3532 34 1 5.4217 4.3051 -0.9231 35 1 4.1356 5.5344 -1.1251 36 1 4.5492 2.9365 -2.5996 37 1 3.8162 4.4596 -3.1763 38 1 2.4689 2.1101 -2.1380 39 1 1.7354 3.6332 -2.7140 40 1 1.9052 2.3440 2.2475 41 1 1.1619 3.9040 1.7606 42 1 -0.8024 2.8672 2.5527 43 1 -0.1624 1.2221 2.2627 44 1 -1.8561 2.1162 0.4183 45 1 3.2616 -1.1449 -0.2022 46 1 0.4571 -2.2273 -0.9816 47 1 2.0534 -2.5923 -1.7720 48 1 1.5947 -5.4677 -2.7104 49 1 2.7163 -2.2113 1.9367 50 1 0.9339 -1.9531 1.6862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042971527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:24 Heat of formation + Delta-G solvation = 16.333410 kcal Electronic energy + Delta-G solvation = -31823.826942 eV Core-core repulsion = 27853.914572 eV Total energy + Delta-G solvation = -3969.912370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.25481 -40.46184 -39.68933 -38.22884 -37.56881 -35.71410 -33.99092 -33.32903 -30.01757 -29.65637 -29.38316 -28.05437 -27.36414 -26.65151 -25.28157 -23.44411 -22.66430 -21.85093 -21.04380 -20.56453 -19.93327 -18.89130 -18.53597 -18.06123 -17.57227 -17.18631 -16.87263 -16.43319 -16.16127 -15.92450 -15.76478 -15.40582 -15.04746 -14.82177 -14.64292 -14.54252 -14.15542 -14.02791 -13.71993 -13.44453 -13.35073 -13.18576 -13.12815 -12.84622 -12.75021 -12.57765 -12.29169 -12.25160 -12.09153 -12.00339 -11.92821 -11.83542 -11.71518 -11.58568 -11.53942 -11.28500 -10.90650 -10.82885 -10.32925 -10.01825 -9.49820 -9.00628 -7.95763 -5.31343 1.29104 1.43515 1.46364 1.50486 1.55304 1.86764 2.31658 2.45825 3.13314 3.22029 3.33478 3.38943 3.42028 3.68177 3.79050 3.82483 3.92179 4.04707 4.09611 4.20185 4.28867 4.35083 4.46004 4.50246 4.60315 4.67866 4.69081 4.69848 4.72337 4.79039 4.82804 4.89202 4.89742 4.97799 5.04146 5.07533 5.12176 5.15316 5.17349 5.28536 5.38266 5.41111 5.48418 5.60844 5.74248 5.75189 5.83821 5.96601 6.38332 6.83819 7.07355 7.18547 7.54122 8.46817 9.21289 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.003497 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.285188 B = 8004.326328 C = 8651.345130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.594 5.594 3 C 0.534 3.466 4 O -0.549 6.549 5 C -0.108 4.108 6 C -0.053 4.053 7 C -0.131 4.131 8 C -0.115 4.115 9 C -0.122 4.122 10 C -0.112 4.112 11 C -0.111 4.111 12 C 0.088 3.912 13 N -0.724 5.724 14 C 0.538 3.462 15 O -0.559 6.559 16 C 0.114 3.886 17 C 0.157 3.843 18 N -0.634 5.634 19 C -0.236 4.236 20 H 0.092 0.908 21 C -0.067 4.067 22 N -0.956 5.956 23 Si 0.984 3.016 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.264 1.264 27 C 0.123 3.877 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.088 0.912 44 H 0.425 0.575 45 H 0.095 0.905 46 H 0.029 0.971 47 H 0.032 0.968 48 H 0.249 0.751 49 H 0.059 0.941 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 23.593 11.572 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.326 5.326 3 C 0.323 3.677 4 O -0.428 6.428 5 C -0.115 4.115 6 C -0.072 4.072 7 C -0.168 4.168 8 C -0.153 4.153 9 C -0.160 4.160 10 C -0.150 4.150 11 C -0.149 4.149 12 C -0.035 4.035 13 N -0.381 5.381 14 C 0.324 3.676 15 O -0.437 6.437 16 C 0.009 3.991 17 C 0.030 3.970 18 N -0.361 5.361 19 C -0.364 4.364 20 H 0.109 0.891 21 C -0.260 4.260 22 N -0.605 5.605 23 Si 0.811 3.189 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.189 1.189 27 C -0.003 4.003 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.156 0.844 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.106 0.894 44 H 0.267 0.733 45 H 0.113 0.887 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.840 23.270 10.839 25.956 hybrid contribution -0.425 -1.839 -1.137 2.204 sum -4.265 21.431 9.701 23.908 Atomic orbital electron populations 1.23748 0.78947 1.05004 1.04935 1.48022 1.07514 1.05146 1.71886 1.20294 0.87559 0.84638 0.75244 1.90582 1.15040 1.86393 1.50763 1.21745 0.93725 0.94439 1.01600 1.21750 0.96869 0.95051 0.93503 1.23008 0.93196 1.02731 0.97852 1.22330 0.99611 0.99632 0.93685 1.22087 0.95484 0.99305 0.99121 1.22076 0.97095 0.98884 0.96962 1.22840 0.97469 1.05138 0.89430 1.22534 0.93200 1.03410 0.84335 1.46508 1.10587 1.73547 1.07462 1.20315 0.88135 0.73432 0.85672 1.90785 1.83502 1.51873 1.17571 1.23338 0.96762 0.81045 0.97962 1.22483 0.96069 0.85549 0.92851 1.45954 1.81353 1.02444 1.06311 1.19444 1.40155 0.81566 0.95251 0.89076 1.25721 1.02258 1.02921 0.95107 1.70044 1.55587 1.35544 0.99315 0.85001 0.77925 0.79092 0.76842 1.20976 1.22315 1.18890 1.23049 0.99502 0.84787 0.92987 0.92154 0.91448 0.84448 0.88079 0.89207 0.89698 0.91871 0.90065 0.94096 0.91184 0.95700 0.92571 0.88035 0.85524 0.84929 0.89429 0.73273 0.88674 0.95352 0.94948 0.94250 0.92238 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 7.47 127.77 0.95 1.38 16 2 N -0.59 -19.78 3.09 -828.33 -2.56 -22.34 16 3 C 0.53 16.68 5.13 87.66 0.45 17.13 16 4 O -0.55 -20.30 12.24 -3.04 -0.04 -20.34 16 5 C -0.11 -2.38 0.32 -52.93 -0.02 -2.40 16 6 C -0.05 -1.16 2.08 -9.72 -0.02 -1.18 16 7 C -0.13 -2.66 5.50 32.01 0.18 -2.48 16 8 C -0.12 -2.31 6.84 31.79 0.22 -2.09 16 9 C -0.12 -3.11 6.80 31.32 0.21 -2.89 16 10 C -0.11 -3.26 4.80 31.32 0.15 -3.11 16 11 C -0.11 -1.24 5.65 31.65 0.18 -1.06 16 12 C 0.09 0.65 6.84 86.83 0.59 1.25 16 13 N -0.72 -9.68 4.31 -459.81 -1.98 -11.67 16 14 C 0.54 12.57 4.21 87.90 0.37 12.94 16 15 O -0.56 -18.21 15.52 -3.05 -0.05 -18.26 16 16 C 0.11 4.70 4.41 46.75 0.21 4.91 16 17 C 0.16 7.95 6.87 86.48 0.59 8.55 16 18 N -0.63 -33.25 3.70 -717.43 -2.65 -35.90 16 19 C -0.24 -13.41 10.70 84.03 0.90 -12.51 16 20 H 0.09 4.86 7.83 -2.92 -0.02 4.84 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 22 N -0.96 -59.70 11.38 21.65 0.25 -59.46 16 23 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 26 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.12 4.93 8.45 86.48 0.73 5.66 16 28 H 0.06 1.91 5.03 -2.39 -0.01 1.90 16 29 H 0.07 2.14 5.70 -2.38 -0.01 2.12 16 30 H 0.14 2.62 2.38 -12.28 -0.03 2.59 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 2.29 5.01 -2.39 -0.01 2.28 16 34 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.19 8.14 -2.38 -0.02 1.18 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.02 0.91 6.23 -2.38 -0.01 0.89 16 39 H 0.06 1.66 7.98 -2.39 -0.02 1.64 16 40 H 0.10 1.15 7.90 -2.39 -0.02 1.14 16 41 H 0.13 0.70 7.91 -2.39 -0.02 0.68 16 42 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.09 0.69 6.70 -2.39 -0.02 0.67 16 44 H 0.43 4.20 8.96 -92.71 -0.83 3.37 16 45 H 0.10 4.35 7.22 -2.38 -0.02 4.34 16 46 H 0.03 1.45 6.10 -2.39 -0.01 1.44 16 47 H 0.03 1.90 7.15 -2.39 -0.02 1.89 16 48 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 49 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.06 2.15 7.49 -2.38 -0.02 2.13 16 Total: -1.00 -80.29 365.76 1.28 -79.01 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.12 Total: 19.94 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.16 Total: 20.65 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -6.95 Total: -129.36 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.08 Total: -38.60 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -80.29 1.28 -79.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042971527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.345 kcal (2) G-P(sol) polarization free energy of solvation -80.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds