Wall clock time and date at job start Tue Mar 31 2020 18:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99659 * 2 1 4 4 O 1.21281 * 120.00321 * 173.49445 * 3 2 1 5 5 C 1.50701 * 120.00117 * 353.48843 * 3 2 1 6 6 C 1.53003 * 110.43480 * 157.49740 * 5 3 2 7 7 C 1.55228 * 110.57984 * 63.17453 * 6 5 3 8 8 C 1.54895 * 102.58992 * 203.33868 * 7 6 5 9 9 C 1.54268 * 104.30949 * 37.93036 * 8 7 6 10 10 C 1.53871 * 106.59902 * 336.32715 * 9 8 7 11 11 C 1.54618 * 110.48860 * 280.04069 * 5 3 2 12 12 C 1.54485 * 101.76693 * 94.01253 * 11 5 3 13 13 N 1.46762 * 105.46974 * 25.41554 * 12 11 5 14 14 C 1.34655 * 111.33807 * 342.86989 * 13 12 11 15 15 O 1.21286 * 125.06937 * 180.51761 * 14 13 12 16 16 C 1.46495 * 120.00485 * 179.97438 * 2 1 3 17 17 C 1.53952 * 113.73669 * 36.68122 * 16 2 1 18 18 N 1.47592 * 86.11364 * 222.04447 * 17 16 2 19 19 C 1.36931 * 134.49116 * 204.64219 * 18 17 16 20 20 H 1.07998 * 120.00128 * 179.97438 * 19 18 17 21 21 C 1.38818 * 120.00094 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99897 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47216 * 60.00387 * 23 21 19 25 25 H 1.48498 * 109.46693 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47146 * 300.00016 * 23 21 19 27 27 C 1.47581 * 91.01163 * 24.64019 * 18 17 16 28 28 H 1.09001 * 109.46791 * 82.56922 * 1 2 3 29 29 H 1.09002 * 109.46293 * 202.56162 * 1 2 3 30 30 H 1.08996 * 109.47308 * 322.56356 * 1 2 3 31 31 H 1.09005 * 110.43683 * 185.76142 * 6 5 3 32 32 H 1.08997 * 110.89938 * 85.05136 * 7 6 5 33 33 H 1.09001 * 110.77215 * 321.56655 * 7 6 5 34 34 H 1.09000 * 110.48494 * 279.18857 * 8 7 6 35 35 H 1.09001 * 110.48825 * 156.67614 * 8 7 6 36 36 H 1.08998 * 110.02901 * 95.61333 * 9 8 7 37 37 H 1.08999 * 110.03242 * 216.99182 * 9 8 7 38 38 H 1.09004 * 110.03289 * 119.28997 * 10 9 8 39 39 H 1.09000 * 110.03121 * 240.66461 * 10 9 8 40 40 H 1.08999 * 110.97322 * 212.12863 * 11 5 3 41 41 H 1.08995 * 110.97319 * 335.85639 * 11 5 3 42 42 H 1.08997 * 110.24862 * 144.41877 * 12 11 5 43 43 H 1.09004 * 110.24619 * 266.33001 * 12 11 5 44 44 H 0.97004 * 124.34377 * 162.98499 * 13 12 11 45 45 H 1.08998 * 112.94639 * 168.40567 * 16 2 1 46 46 H 1.08994 * 113.76783 * 336.34287 * 17 16 2 47 47 H 1.08998 * 113.77158 * 107.74494 * 17 16 2 48 48 H 0.96997 * 119.99931 * 179.97438 * 22 21 19 49 49 H 1.09000 * 113.76462 * 221.05499 * 27 18 17 50 50 H 1.08998 * 113.87001 * 89.67632 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3458 1.1708 0.1190 5 6 1.3926 2.4681 -0.1480 6 6 2.2176 3.6248 0.4198 7 6 3.5362 3.7990 -0.3805 8 6 4.4557 4.5198 0.6365 9 6 4.1073 3.8709 1.9921 10 6 2.6844 3.3019 1.8543 11 6 1.0467 2.7277 -1.6325 12 6 -0.3791 2.1412 -1.7310 13 7 -0.9267 2.2130 -0.3712 14 6 0.0481 2.3885 0.5410 15 8 -0.1249 2.4720 1.7385 16 6 2.1976 -1.2686 0.0006 17 6 1.5288 -2.3708 -0.8408 18 7 1.8684 -3.2837 0.2681 19 6 2.0740 -4.6335 0.3712 20 1 2.3192 -5.0709 1.3277 21 6 1.9674 -5.4398 -0.7538 22 7 1.6690 -4.9066 -1.9196 23 14 2.2472 -7.2813 -0.6130 24 1 1.2642 -7.8601 0.3376 25 1 2.0766 -7.9112 -1.9469 26 1 3.6238 -7.5364 -0.1181 27 6 1.8973 -2.1572 1.2212 28 1 -0.3633 0.1329 -1.0191 29 1 -0.3632 -0.9491 0.3943 30 1 -0.3634 0.8160 0.6247 31 1 1.6384 4.5482 0.4059 32 1 3.3764 4.4182 -1.2631 33 1 3.9514 2.8299 -0.6572 34 1 4.2380 5.5876 0.6576 35 1 5.5038 4.3499 0.3904 36 1 4.8107 3.0682 2.2134 37 1 4.1356 4.6204 2.7830 38 1 2.6971 2.2229 2.0089 39 1 2.0214 3.7748 2.5788 40 1 1.0452 3.7955 -1.8517 41 1 1.7337 2.1972 -2.2917 42 1 -0.9854 2.7363 -2.4138 43 1 -0.3384 1.1055 -2.0684 44 1 -1.8700 2.1414 -0.1567 45 1 3.2616 -1.1450 -0.2012 46 1 0.4572 -2.2281 -0.9798 47 1 2.0535 -2.5938 -1.7698 48 1 1.5949 -5.4699 -2.7058 49 1 2.7163 -2.2097 1.9385 50 1 0.9348 -1.9505 1.6890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042971528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:29 Heat of formation + Delta-G solvation = 44.803013 kcal Electronic energy + Delta-G solvation = -31806.705284 eV Core-core repulsion = 27838.027449 eV Total energy + Delta-G solvation = -3968.677835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34364 -39.12489 -38.39702 -36.97486 -36.61361 -34.21837 -32.47508 -31.94261 -29.18718 -28.46466 -27.85064 -26.92248 -26.20575 -24.83015 -23.72434 -22.42781 -21.51655 -20.88479 -20.07214 -19.01796 -18.80011 -17.65043 -17.03334 -16.76359 -16.43005 -15.85298 -15.37430 -15.33517 -15.00217 -14.81294 -14.34760 -14.12699 -13.85205 -13.74029 -13.49694 -13.32868 -13.02754 -12.64978 -12.51963 -12.37187 -11.82849 -11.59427 -11.55742 -11.34963 -11.33651 -11.20837 -11.10122 -10.92656 -10.92001 -10.79564 -10.73129 -10.64066 -10.30897 -10.17288 -10.10648 -9.90067 -9.58484 -9.31808 -9.05867 -8.82806 -8.13953 -6.94417 -5.82249 -3.14675 2.26039 2.66467 3.06377 3.17687 3.38467 3.42260 3.43390 3.99281 4.17471 4.28691 4.43955 4.58500 4.64852 4.82300 4.87348 4.93721 5.13064 5.18735 5.24778 5.30309 5.42529 5.46160 5.49495 5.52289 5.59318 5.66860 5.68091 5.75356 5.78441 5.82355 5.91690 6.00095 6.06081 6.07335 6.13771 6.22278 6.40560 6.42386 6.48538 6.53077 6.54641 6.59038 6.68894 6.76132 7.13724 7.28146 7.46871 7.68761 7.92050 7.95618 8.34183 8.99502 9.65245 10.52257 11.35031 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.003453 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.759762 B = 8106.753388 C = 8772.589656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.592 5.592 3 C 0.536 3.464 4 O -0.520 6.520 5 C -0.110 4.110 6 C -0.055 4.055 7 C -0.128 4.128 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.112 4.112 11 C -0.116 4.116 12 C 0.088 3.912 13 N -0.745 5.745 14 C 0.549 3.451 15 O -0.516 6.516 16 C 0.091 3.909 17 C 0.159 3.841 18 N -0.605 5.605 19 C -0.223 4.223 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.108 3.892 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.414 0.586 45 H 0.116 0.884 46 H 0.030 0.970 47 H 0.077 0.923 48 H 0.255 0.745 49 H 0.047 0.953 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 21.032 -1.307 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.324 5.324 3 C 0.322 3.678 4 O -0.396 6.396 5 C -0.117 4.117 6 C -0.074 4.074 7 C -0.166 4.166 8 C -0.156 4.156 9 C -0.156 4.156 10 C -0.149 4.149 11 C -0.154 4.154 12 C -0.035 4.035 13 N -0.404 5.404 14 C 0.337 3.663 15 O -0.392 6.392 16 C -0.013 4.013 17 C 0.033 3.967 18 N -0.331 5.331 19 C -0.351 4.351 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.019 4.019 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.254 0.746 45 H 0.134 0.866 46 H 0.048 0.952 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.030 20.717 -0.747 20.951 hybrid contribution -0.728 -1.200 0.082 1.406 sum -3.758 19.517 -0.665 19.887 Atomic orbital electron populations 1.23438 0.80415 1.04682 1.02881 1.48085 1.06750 1.06084 1.71435 1.19606 0.87663 0.83763 0.76763 1.90627 1.13637 1.86034 1.49309 1.21754 0.94845 0.97139 0.98002 1.21728 0.95511 0.93966 0.96172 1.22936 0.94092 1.02854 0.96675 1.22254 0.99488 0.98636 0.95251 1.22046 0.97018 0.99580 0.96923 1.22132 0.95687 1.02059 0.95049 1.22673 0.96063 1.03187 0.93447 1.22459 0.94667 1.02709 0.83712 1.46683 1.09954 1.75671 1.08101 1.19953 0.86863 0.73011 0.86444 1.90834 1.84942 1.49959 1.13434 1.24081 0.97905 0.79741 0.99538 1.22619 0.96445 0.83611 0.94054 1.45644 1.81060 1.02086 1.04331 1.18965 1.40989 0.80195 0.94920 0.90096 1.24785 1.01793 0.98255 0.95409 1.69796 1.54068 1.34315 0.98682 0.86161 0.78139 0.84565 0.76679 1.21153 1.21501 1.20966 1.22968 0.98166 0.87158 0.93630 0.91065 0.90408 0.88953 0.90492 0.92443 0.87760 0.92480 0.91907 0.91741 0.92651 0.91164 0.92019 0.88765 0.88401 0.89708 0.89171 0.74622 0.86608 0.95223 0.90448 0.93529 0.93447 0.94789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 7.10 59.85 0.42 0.82 16 2 N -0.59 -9.61 3.09 -175.74 -0.54 -10.15 16 3 C 0.54 8.31 5.25 -10.98 -0.06 8.25 16 4 O -0.52 -9.27 11.97 5.56 0.07 -9.21 16 5 C -0.11 -1.32 0.33 -155.67 -0.05 -1.37 16 6 C -0.05 -0.64 2.08 -88.78 -0.18 -0.83 16 7 C -0.13 -1.43 5.43 -24.55 -0.13 -1.57 16 8 C -0.12 -1.27 6.82 -25.07 -0.17 -1.44 16 9 C -0.12 -1.43 6.80 -25.61 -0.17 -1.60 16 10 C -0.11 -1.53 4.78 -25.62 -0.12 -1.65 16 11 C -0.12 -0.95 5.60 -25.10 -0.14 -1.09 16 12 C 0.09 0.61 6.78 -3.12 -0.02 0.59 16 13 N -0.75 -6.36 4.33 -81.73 -0.35 -6.71 16 14 C 0.55 6.77 4.28 -10.76 -0.05 6.73 16 15 O -0.52 -8.16 16.38 5.55 0.09 -8.07 16 16 C 0.09 1.79 4.37 -70.14 -0.31 1.49 16 17 C 0.16 3.64 6.90 -2.97 -0.02 3.62 16 18 N -0.60 -15.57 3.70 -178.07 -0.66 -16.22 16 19 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 20 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.80 11.38 55.49 0.63 -26.17 16 23 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.11 2.33 8.43 -2.98 -0.03 2.30 16 28 H 0.07 0.82 4.41 -51.93 -0.23 0.59 16 29 H 0.08 1.22 6.09 -51.93 -0.32 0.90 16 30 H 0.09 1.24 2.79 -93.84 -0.26 0.98 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.43 5.36 -51.93 -0.28 1.15 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.17 5.93 -51.93 -0.31 0.86 16 39 H 0.06 0.85 8.01 -51.93 -0.42 0.43 16 40 H 0.09 0.59 7.91 -51.93 -0.41 0.18 16 41 H 0.10 0.83 7.89 -51.93 -0.41 0.42 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.68 5.59 -51.93 -0.29 0.39 16 44 H 0.41 2.78 8.96 -40.82 -0.37 2.42 16 45 H 0.12 2.45 7.30 -51.93 -0.38 2.08 16 46 H 0.03 0.67 6.54 -51.93 -0.34 0.33 16 47 H 0.08 1.97 7.15 -51.93 -0.37 1.60 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.03 0.72 7.10 -51.93 -0.37 0.35 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -33.25 365.21 -9.25 -42.50 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.67 Total: 4.00 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.29 Total: 7.55 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.92 Total: -59.26 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.16 Total: -17.28 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.25 -9.25 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042971528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.298 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds