Wall clock time and date at job start Tue Mar 31 2020 18:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99659 * 2 1 4 4 O 1.21281 * 120.00321 * 173.49445 * 3 2 1 5 5 C 1.50701 * 120.00117 * 353.48843 * 3 2 1 6 6 C 1.53003 * 110.43480 * 157.49740 * 5 3 2 7 7 C 1.55228 * 110.57984 * 63.17453 * 6 5 3 8 8 C 1.54895 * 102.58992 * 203.33868 * 7 6 5 9 9 C 1.54268 * 104.30949 * 37.93036 * 8 7 6 10 10 C 1.53871 * 106.59902 * 336.32715 * 9 8 7 11 11 C 1.54618 * 110.48860 * 280.04069 * 5 3 2 12 12 C 1.54485 * 101.76693 * 94.01253 * 11 5 3 13 13 N 1.46762 * 105.46974 * 25.41554 * 12 11 5 14 14 C 1.34655 * 111.33807 * 342.86989 * 13 12 11 15 15 O 1.21286 * 125.06937 * 180.51761 * 14 13 12 16 16 C 1.46495 * 120.00485 * 179.97438 * 2 1 3 17 17 C 1.53952 * 113.73669 * 36.68122 * 16 2 1 18 18 N 1.47592 * 86.11364 * 222.04447 * 17 16 2 19 19 C 1.36931 * 134.49116 * 204.64219 * 18 17 16 20 20 H 1.07998 * 120.00128 * 179.97438 * 19 18 17 21 21 C 1.38818 * 120.00094 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99897 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47216 * 60.00387 * 23 21 19 25 25 H 1.48498 * 109.46693 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47146 * 300.00016 * 23 21 19 27 27 C 1.47581 * 91.01163 * 24.64019 * 18 17 16 28 28 H 1.09001 * 109.46791 * 82.56922 * 1 2 3 29 29 H 1.09002 * 109.46293 * 202.56162 * 1 2 3 30 30 H 1.08996 * 109.47308 * 322.56356 * 1 2 3 31 31 H 1.09005 * 110.43683 * 185.76142 * 6 5 3 32 32 H 1.08997 * 110.89938 * 85.05136 * 7 6 5 33 33 H 1.09001 * 110.77215 * 321.56655 * 7 6 5 34 34 H 1.09000 * 110.48494 * 279.18857 * 8 7 6 35 35 H 1.09001 * 110.48825 * 156.67614 * 8 7 6 36 36 H 1.08998 * 110.02901 * 95.61333 * 9 8 7 37 37 H 1.08999 * 110.03242 * 216.99182 * 9 8 7 38 38 H 1.09004 * 110.03289 * 119.28997 * 10 9 8 39 39 H 1.09000 * 110.03121 * 240.66461 * 10 9 8 40 40 H 1.08999 * 110.97322 * 212.12863 * 11 5 3 41 41 H 1.08995 * 110.97319 * 335.85639 * 11 5 3 42 42 H 1.08997 * 110.24862 * 144.41877 * 12 11 5 43 43 H 1.09004 * 110.24619 * 266.33001 * 12 11 5 44 44 H 0.97004 * 124.34377 * 162.98499 * 13 12 11 45 45 H 1.08998 * 112.94639 * 168.40567 * 16 2 1 46 46 H 1.08994 * 113.76783 * 336.34287 * 17 16 2 47 47 H 1.08998 * 113.77158 * 107.74494 * 17 16 2 48 48 H 0.96997 * 119.99931 * 179.97438 * 22 21 19 49 49 H 1.09000 * 113.76462 * 221.05499 * 27 18 17 50 50 H 1.08998 * 113.87001 * 89.67632 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3458 1.1708 0.1190 5 6 1.3926 2.4681 -0.1480 6 6 2.2176 3.6248 0.4198 7 6 3.5362 3.7990 -0.3805 8 6 4.4557 4.5198 0.6365 9 6 4.1073 3.8709 1.9921 10 6 2.6844 3.3019 1.8543 11 6 1.0467 2.7277 -1.6325 12 6 -0.3791 2.1412 -1.7310 13 7 -0.9267 2.2130 -0.3712 14 6 0.0481 2.3885 0.5410 15 8 -0.1249 2.4720 1.7385 16 6 2.1976 -1.2686 0.0006 17 6 1.5288 -2.3708 -0.8408 18 7 1.8684 -3.2837 0.2681 19 6 2.0740 -4.6335 0.3712 20 1 2.3192 -5.0709 1.3277 21 6 1.9674 -5.4398 -0.7538 22 7 1.6690 -4.9066 -1.9196 23 14 2.2472 -7.2813 -0.6130 24 1 1.2642 -7.8601 0.3376 25 1 2.0766 -7.9112 -1.9469 26 1 3.6238 -7.5364 -0.1181 27 6 1.8973 -2.1572 1.2212 28 1 -0.3633 0.1329 -1.0191 29 1 -0.3632 -0.9491 0.3943 30 1 -0.3634 0.8160 0.6247 31 1 1.6384 4.5482 0.4059 32 1 3.3764 4.4182 -1.2631 33 1 3.9514 2.8299 -0.6572 34 1 4.2380 5.5876 0.6576 35 1 5.5038 4.3499 0.3904 36 1 4.8107 3.0682 2.2134 37 1 4.1356 4.6204 2.7830 38 1 2.6971 2.2229 2.0089 39 1 2.0214 3.7748 2.5788 40 1 1.0452 3.7955 -1.8517 41 1 1.7337 2.1972 -2.2917 42 1 -0.9854 2.7363 -2.4138 43 1 -0.3384 1.1055 -2.0684 44 1 -1.8700 2.1414 -0.1567 45 1 3.2616 -1.1450 -0.2012 46 1 0.4572 -2.2281 -0.9798 47 1 2.0535 -2.5938 -1.7698 48 1 1.5949 -5.4699 -2.7058 49 1 2.7163 -2.2097 1.9385 50 1 0.9348 -1.9505 1.6890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042971528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:28 Heat of formation + Delta-G solvation = 21.830081 kcal Electronic energy + Delta-G solvation = -31807.701465 eV Core-core repulsion = 27838.027449 eV Total energy + Delta-G solvation = -3969.674016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.33616 -40.48726 -39.71277 -38.21428 -37.56562 -35.67978 -33.98076 -33.32809 -30.05833 -29.66535 -29.37729 -28.07320 -27.37489 -26.67594 -25.26958 -23.45966 -22.65922 -21.89013 -21.01818 -20.57279 -19.99865 -18.87438 -18.53731 -18.00867 -17.62391 -17.03502 -16.90400 -16.51717 -16.36444 -15.90362 -15.73310 -15.36463 -15.09896 -14.81059 -14.67612 -14.46810 -14.15517 -14.01266 -13.65412 -13.45103 -13.32770 -13.18318 -13.13664 -12.81964 -12.73900 -12.57312 -12.27164 -12.20250 -12.06128 -12.00407 -11.98248 -11.84777 -11.73852 -11.58096 -11.53939 -11.23034 -10.90063 -10.88039 -10.41291 -9.96551 -9.49771 -9.00076 -7.95761 -5.30323 1.25294 1.44772 1.48213 1.50542 1.54310 1.87409 2.29900 2.46138 3.13355 3.20949 3.29990 3.38118 3.41432 3.68389 3.76251 3.83129 3.92880 4.03813 4.07404 4.14579 4.24942 4.35697 4.39847 4.54282 4.61334 4.63263 4.69006 4.70163 4.71327 4.79244 4.82107 4.89081 4.90686 4.97347 5.07274 5.11690 5.14662 5.15926 5.17837 5.29628 5.39573 5.42732 5.51039 5.59662 5.70218 5.72518 5.85882 5.94179 6.37016 6.86645 7.05454 7.14945 7.53214 8.46765 9.20882 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.003453 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.759762 B = 8106.753388 C = 8772.589656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.596 5.596 3 C 0.532 3.468 4 O -0.547 6.547 5 C -0.108 4.108 6 C -0.053 4.053 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.120 4.120 10 C -0.112 4.112 11 C -0.112 4.112 12 C 0.088 3.912 13 N -0.727 5.727 14 C 0.543 3.457 15 O -0.557 6.557 16 C 0.119 3.881 17 C 0.168 3.832 18 N -0.633 5.633 19 C -0.245 4.245 20 H 0.081 0.919 21 C -0.058 4.058 22 N -0.948 5.948 23 Si 0.982 3.018 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.109 3.891 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.031 0.969 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.425 0.575 45 H 0.099 0.901 46 H 0.037 0.963 47 H 0.048 0.952 48 H 0.252 0.748 49 H 0.045 0.955 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 23.112 -2.624 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.328 5.328 3 C 0.320 3.680 4 O -0.425 6.425 5 C -0.115 4.115 6 C -0.072 4.072 7 C -0.162 4.162 8 C -0.153 4.153 9 C -0.157 4.157 10 C -0.150 4.150 11 C -0.150 4.150 12 C -0.035 4.035 13 N -0.385 5.385 14 C 0.332 3.668 15 O -0.436 6.436 16 C 0.014 3.986 17 C 0.042 3.958 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.099 0.901 21 C -0.251 4.251 22 N -0.596 5.596 23 Si 0.809 3.191 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.204 1.204 27 C -0.017 4.017 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.114 0.886 42 H 0.146 0.854 43 H 0.104 0.896 44 H 0.267 0.733 45 H 0.117 0.883 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.314 22.831 -2.079 23.328 hybrid contribution -0.329 -1.798 0.537 1.905 sum -4.643 21.033 -1.543 21.595 Atomic orbital electron populations 1.23663 0.78763 1.04046 1.04875 1.48033 1.07639 1.05101 1.71994 1.20289 0.87591 0.84602 0.75484 1.90628 1.15155 1.86601 1.50163 1.21758 0.94257 0.94571 1.00928 1.21795 0.96090 0.94668 0.94616 1.22863 0.93540 1.01959 0.97789 1.22273 0.99484 0.99749 0.93808 1.22058 0.95595 0.99364 0.98725 1.22083 0.96655 0.99498 0.96753 1.22826 0.96628 1.05379 0.90160 1.22647 0.94514 1.03212 0.83126 1.46626 1.10053 1.73601 1.08234 1.20065 0.87619 0.72982 0.86183 1.90819 1.85549 1.51998 1.15251 1.23316 0.96994 0.81051 0.97252 1.22466 0.96492 0.84243 0.92598 1.45945 1.81464 1.02264 1.06319 1.19326 1.41014 0.81703 0.95203 0.90104 1.25613 1.01875 1.02574 0.95073 1.69964 1.54965 1.35559 0.99089 0.85115 0.78183 0.79204 0.76572 1.20327 1.21475 1.20394 1.23038 0.98445 0.86367 0.93868 0.88148 0.92355 0.88027 0.88171 0.89379 0.90669 0.90102 0.91907 0.93920 0.91207 0.94989 0.92600 0.85576 0.88572 0.85431 0.89630 0.73265 0.88298 0.94558 0.93407 0.93895 0.93685 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 7.10 127.77 0.91 1.67 16 2 N -0.60 -19.53 3.09 -828.29 -2.56 -22.09 16 3 C 0.53 16.57 5.25 87.66 0.46 17.03 16 4 O -0.55 -20.24 11.97 -3.03 -0.04 -20.27 16 5 C -0.11 -2.40 0.33 -52.94 -0.02 -2.42 16 6 C -0.05 -1.14 2.08 -9.60 -0.02 -1.16 16 7 C -0.12 -2.52 5.43 32.01 0.17 -2.35 16 8 C -0.12 -2.27 6.82 31.67 0.22 -2.05 16 9 C -0.12 -2.89 6.80 31.32 0.21 -2.68 16 10 C -0.11 -3.10 4.78 31.32 0.15 -2.95 16 11 C -0.11 -1.44 5.60 31.65 0.18 -1.26 16 12 C 0.09 0.84 6.78 86.83 0.59 1.42 16 13 N -0.73 -10.11 4.33 -530.96 -2.30 -12.41 16 14 C 0.54 12.46 4.28 87.86 0.38 12.84 16 15 O -0.56 -17.34 16.38 -3.05 -0.05 -17.39 16 16 C 0.12 4.87 4.37 46.75 0.20 5.07 16 17 C 0.17 7.93 6.90 86.48 0.60 8.53 16 18 N -0.63 -33.54 3.70 -717.27 -2.65 -36.19 16 19 C -0.24 -14.04 10.70 84.04 0.90 -13.14 16 20 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 21 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 22 N -0.95 -56.13 11.38 21.65 0.25 -55.88 16 23 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 C 0.11 4.87 8.43 86.48 0.73 5.59 16 28 H 0.10 2.10 4.41 -2.39 -0.01 2.08 16 29 H 0.06 1.81 6.09 -2.39 -0.01 1.80 16 30 H 0.10 2.62 2.79 -41.91 -0.12 2.51 16 31 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 2.03 5.36 -2.39 -0.01 2.01 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.03 1.11 5.93 -2.38 -0.01 1.10 16 39 H 0.06 1.56 8.01 -2.39 -0.02 1.54 16 40 H 0.13 0.89 7.91 -2.39 -0.02 0.87 16 41 H 0.10 1.35 7.89 -2.39 -0.02 1.33 16 42 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.09 0.96 5.59 -2.38 -0.01 0.95 16 44 H 0.43 4.33 8.96 -92.71 -0.83 3.49 16 45 H 0.10 4.41 7.30 -2.39 -0.02 4.40 16 46 H 0.04 1.66 6.54 -2.39 -0.02 1.65 16 47 H 0.05 2.53 7.15 -2.39 -0.02 2.52 16 48 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 49 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.04 1.90 7.10 -2.39 -0.02 1.88 16 Total: -1.00 -75.82 365.21 0.83 -74.99 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.03 Total: 20.24 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 6.12 Total: 21.33 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -7.27 Total: -126.58 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.09 Total: -37.66 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -75.82 0.83 -74.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042971528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.821 kcal (2) G-P(sol) polarization free energy of solvation -75.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds