Wall clock time and date at job start Tue Mar 31 2020 18:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99670 * 2 1 4 4 O 1.21277 * 120.00226 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00137 * 359.97438 * 3 2 1 6 6 H 1.09000 * 110.88493 * 56.19136 * 5 3 2 7 7 C 1.54861 * 111.03808 * 292.29639 * 5 3 2 8 8 C 1.51282 * 104.20513 * 217.09695 * 7 5 3 9 9 O 1.21288 * 124.93887 * 196.24394 * 8 7 5 10 10 N 1.34415 * 110.11730 * 16.26751 * 8 7 5 11 11 C 1.46506 * 124.35027 * 180.42850 * 10 8 7 12 12 C 1.54262 * 110.03174 * 57.13894 * 11 10 8 13 13 C 1.54886 * 104.19683 * 217.10561 * 12 11 10 14 14 C 1.54897 * 102.74863 * 37.94540 * 13 12 11 15 15 C 1.53882 * 110.03070 * 299.97643 * 11 10 8 16 16 C 1.46760 * 111.30303 * 0.40627 * 10 8 7 17 17 C 1.46494 * 120.00286 * 179.97438 * 2 1 3 18 18 C 1.53949 * 113.74112 * 38.74075 * 17 2 1 19 19 N 1.47814 * 86.03335 * 222.08163 * 18 17 2 20 20 C 1.36935 * 134.45262 * 204.63883 * 19 18 17 21 21 H 1.07998 * 119.99917 * 179.87648 * 20 19 18 22 22 C 1.38809 * 120.00280 * 359.87562 * 20 19 18 23 23 N 1.31618 * 120.00139 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00037 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47213 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47076 * 120.00392 * 24 22 20 27 27 H 1.48511 * 109.46601 * 239.99779 * 24 22 20 28 28 C 1.47580 * 91.05371 * 24.55124 * 19 18 17 29 29 H 1.09000 * 109.46790 * 90.00535 * 1 2 3 30 30 H 1.09005 * 109.47091 * 210.00056 * 1 2 3 31 31 H 1.09004 * 109.47303 * 330.00350 * 1 2 3 32 32 H 1.08998 * 110.46775 * 98.42598 * 7 5 3 33 33 H 1.08998 * 110.49332 * 335.78781 * 7 5 3 34 34 H 1.08996 * 110.01936 * 178.58596 * 11 10 8 35 35 H 1.08993 * 110.48905 * 335.78663 * 12 11 10 36 36 H 1.09002 * 110.48722 * 98.42735 * 12 11 10 37 37 H 1.09001 * 110.75962 * 279.62912 * 13 12 11 38 38 H 1.09004 * 110.91766 * 156.33415 * 13 12 11 39 39 H 1.09002 * 110.48661 * 203.37798 * 14 13 12 40 40 H 1.09003 * 110.48230 * 80.73497 * 14 13 12 41 41 H 1.09000 * 110.02784 * 238.56898 * 15 11 10 42 42 H 1.09000 * 110.03248 * 359.97438 * 15 11 10 43 43 H 1.09002 * 110.24740 * 101.98470 * 16 10 8 44 44 H 1.09002 * 110.24616 * 223.89995 * 16 10 8 45 45 H 1.08997 * 112.94280 * 170.33642 * 17 2 1 46 46 H 1.08995 * 113.77033 * 336.35365 * 18 17 2 47 47 H 1.09000 * 113.76175 * 107.74752 * 18 17 2 48 48 H 0.96998 * 120.00498 * 179.97438 * 23 22 20 49 49 H 1.08997 * 113.77119 * 221.14320 * 28 19 18 50 50 H 1.09006 * 113.87012 * 89.76326 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1674 0.0005 5 6 1.3853 2.4724 -0.0006 6 1 0.6999 2.5257 0.8453 7 6 0.6329 2.6793 -1.3382 8 6 0.7534 4.1633 -1.6062 9 8 0.0747 4.7837 -2.3972 10 7 1.7222 4.6942 -0.8405 11 6 2.0952 6.1110 -0.8436 12 6 0.8665 6.9816 -0.5090 13 6 1.0328 8.2339 -1.4052 14 6 1.5997 7.6410 -2.7191 15 6 2.5613 6.5302 -2.2489 16 6 2.3580 3.6724 -0.0006 17 6 2.1976 -1.2686 0.0006 18 6 1.5556 -2.3554 -0.8808 19 7 1.8612 -3.2877 0.2247 20 6 2.0641 -4.6392 0.3111 21 1 2.2811 -5.0927 1.2670 22 6 1.9908 -5.4264 -0.8298 23 7 1.7259 -4.8739 -1.9947 24 14 2.2669 -7.2702 -0.7118 25 1 2.5454 -7.6397 0.6992 26 1 1.0516 -7.9836 -1.1803 27 1 3.4237 -7.6528 -1.5608 28 6 1.8622 -2.1775 1.1970 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 -0.4140 2.3941 -1.2348 33 1 1.1080 2.1078 -2.1356 34 1 2.8890 6.2895 -0.1183 35 1 -0.0541 6.4540 -0.7578 36 1 0.8735 7.2626 0.5442 37 1 1.7393 8.9354 -0.9616 38 1 0.0714 8.7162 -1.5822 39 1 2.1417 8.4032 -3.2789 40 1 0.7973 7.2198 -3.3249 41 1 3.5810 6.9129 -2.2053 42 1 2.5104 5.6795 -2.9285 43 1 3.3184 3.3795 -0.4248 44 1 2.4931 4.0484 1.0136 45 1 3.2669 -1.1419 -0.1680 46 1 0.4889 -2.2099 -1.0507 47 1 2.1093 -2.5617 -1.7968 48 1 1.6751 -5.4239 -2.7921 49 1 2.6599 -2.2421 1.9369 50 1 0.8864 -1.9783 1.6401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044283047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:38 Heat of formation + Delta-G solvation = -7.491740 kcal Electronic energy + Delta-G solvation = -29699.715293 eV Core-core repulsion = 25728.769787 eV Total energy + Delta-G solvation = -3970.945506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20443 -39.75778 -37.92172 -37.51398 -36.12647 -34.63985 -32.44409 -31.78864 -28.97992 -28.18700 -27.86602 -27.43999 -26.73232 -24.88654 -24.14908 -22.34810 -21.75777 -20.92363 -19.64363 -18.97330 -18.54704 -17.65175 -17.05496 -16.85965 -16.33420 -16.10593 -15.41223 -15.18173 -15.06595 -14.76645 -14.51570 -14.03547 -13.86082 -13.78061 -13.50809 -13.46015 -13.36337 -12.87234 -12.54260 -12.18418 -11.99166 -11.92113 -11.82122 -11.68768 -11.57849 -11.46923 -11.36573 -11.36168 -11.32871 -11.15045 -10.92953 -10.78483 -10.76001 -10.32320 -10.10597 -9.94171 -9.62529 -9.51957 -8.86648 -8.85747 -8.25741 -6.97285 -5.84092 -3.17227 2.41886 2.62378 2.70840 3.14058 3.35990 3.41345 3.43757 4.01071 4.12146 4.32802 4.35185 4.40986 4.50761 4.59453 4.71684 4.87892 5.01156 5.12826 5.17234 5.18812 5.23869 5.26114 5.28983 5.35299 5.38577 5.42216 5.44579 5.51660 5.57971 5.63304 5.67727 5.71895 5.75389 5.80793 5.89169 5.94094 6.01557 6.08582 6.14468 6.36335 6.45664 6.50466 6.67824 6.92295 7.12934 7.25059 7.45619 7.63492 7.89880 8.01229 8.27136 8.97053 9.63222 10.49083 11.33143 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033118 B = 0.002148 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.270362 B =13035.057943 C =13212.277963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.593 5.593 3 C 0.522 3.478 4 O -0.540 6.540 5 C -0.122 4.122 6 H 0.115 0.885 7 C -0.145 4.145 8 C 0.521 3.479 9 O -0.524 6.524 10 N -0.615 5.615 11 C 0.154 3.846 12 C -0.135 4.135 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.132 4.132 16 C 0.116 3.884 17 C 0.089 3.911 18 C 0.157 3.843 19 N -0.606 5.606 20 C -0.223 4.223 21 H 0.083 0.917 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.109 3.891 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.033 0.967 47 H 0.077 0.923 48 H 0.255 0.745 49 H 0.047 0.953 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 24.541 4.006 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.325 5.325 3 C 0.308 3.692 4 O -0.418 6.418 5 C -0.144 4.144 6 H 0.133 0.867 7 C -0.186 4.186 8 C 0.309 3.691 9 O -0.401 6.401 10 N -0.349 5.349 11 C 0.052 3.948 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.158 4.158 15 C -0.171 4.171 16 C -0.007 4.007 17 C -0.014 4.014 18 C 0.031 3.969 19 N -0.333 5.333 20 C -0.351 4.351 21 H 0.100 0.900 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.018 4.018 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.134 0.866 46 H 0.050 0.950 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.318 24.567 3.473 24.919 hybrid contribution -0.073 -1.231 0.144 1.241 sum -2.391 23.336 3.616 23.735 Atomic orbital electron populations 1.21891 0.79779 1.03066 1.02236 1.48004 1.07006 1.06123 1.71376 1.20013 0.87733 0.84795 0.76618 1.90696 1.13673 1.87086 1.50323 1.22266 0.98522 0.93752 0.99893 0.86700 1.22443 1.03505 0.94973 0.97640 1.20712 0.79207 0.89433 0.79758 1.90714 1.46446 1.67239 1.35666 1.48509 1.36477 1.08013 1.41942 1.21676 0.97036 0.78342 0.97794 1.22732 0.98891 0.96193 0.99478 1.22408 1.00970 0.96698 0.95714 1.22295 0.99011 0.97051 0.97409 1.22486 0.99106 0.99459 0.96006 1.22016 0.96760 0.86026 0.95920 1.24101 0.98064 0.79633 0.99586 1.22664 0.96909 0.83429 0.93893 1.45714 1.81955 1.02230 1.03397 1.19033 1.41512 0.80169 0.94374 0.89967 1.24812 1.01855 0.98331 0.95357 1.69815 1.54533 1.34278 0.98051 0.86016 0.77443 0.84680 0.77424 1.20388 1.21682 1.21595 1.22961 0.98069 0.87298 0.93501 0.92112 0.90140 0.91557 0.87152 0.87187 0.88978 0.90169 0.91497 0.91603 0.91444 0.91944 0.90788 0.91319 0.91104 0.88906 0.89953 0.86561 0.94964 0.90498 0.93542 0.93479 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 7.79 59.85 0.47 1.28 16 2 N -0.59 -8.54 3.09 -175.74 -0.54 -9.08 16 3 C 0.52 7.14 6.97 -10.98 -0.08 7.07 16 4 O -0.54 -9.32 14.98 5.56 0.08 -9.23 16 5 C -0.12 -1.16 2.55 -90.01 -0.23 -1.39 16 6 H 0.12 0.84 7.25 -51.93 -0.38 0.46 16 7 C -0.15 -1.42 5.49 -26.62 -0.15 -1.56 16 8 C 0.52 6.01 6.85 -10.86 -0.07 5.94 16 9 O -0.52 -7.55 15.92 5.55 0.09 -7.46 16 10 N -0.62 -6.02 2.83 -163.57 -0.46 -6.48 16 11 C 0.15 1.32 3.55 -66.81 -0.24 1.08 16 12 C -0.13 -1.12 6.29 -25.08 -0.16 -1.27 16 13 C -0.12 -0.90 6.91 -24.74 -0.17 -1.07 16 14 C -0.12 -1.03 6.83 -25.07 -0.17 -1.20 16 15 C -0.13 -1.19 6.02 -25.61 -0.15 -1.34 16 16 C 0.12 1.07 6.67 -3.12 -0.02 1.05 16 17 C 0.09 1.67 4.40 -70.15 -0.31 1.36 16 18 C 0.16 3.53 6.97 -2.84 -0.02 3.51 16 19 N -0.61 -15.14 3.70 -177.89 -0.66 -15.80 16 20 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.80 11.39 55.49 0.63 -26.17 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.11 2.15 8.46 -2.97 -0.03 2.13 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.08 0.99 6.35 -51.93 -0.33 0.66 16 31 H 0.07 0.52 6.12 -51.93 -0.32 0.20 16 32 H 0.11 0.90 7.58 -51.93 -0.39 0.50 16 33 H 0.11 1.18 7.90 -51.93 -0.41 0.77 16 34 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.08 0.85 6.45 -51.93 -0.33 0.51 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.79 7.37 -51.93 -0.38 0.41 16 43 H 0.09 1.02 6.96 -51.93 -0.36 0.66 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.12 2.39 7.22 -51.93 -0.37 2.02 16 46 H 0.03 0.71 6.83 -51.93 -0.35 0.36 16 47 H 0.08 1.97 7.17 -51.93 -0.37 1.60 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.04 0.65 6.84 -51.93 -0.36 0.29 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -33.21 386.17 -9.78 -42.99 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.13 Total: -0.38 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.58 Total: 8.98 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -1.03 Total: -57.53 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.17 Total: -16.70 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.21 -9.78 -42.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044283047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.501 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds