Wall clock time and date at job start Tue Mar 31 2020 18:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99670 * 2 1 4 4 O 1.21277 * 120.00226 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00137 * 359.97438 * 3 2 1 6 6 H 1.09000 * 110.88493 * 56.19136 * 5 3 2 7 7 C 1.54861 * 111.03808 * 292.29639 * 5 3 2 8 8 C 1.51282 * 104.20513 * 217.09695 * 7 5 3 9 9 O 1.21288 * 124.93887 * 196.24394 * 8 7 5 10 10 N 1.34415 * 110.11730 * 16.26751 * 8 7 5 11 11 C 1.46506 * 124.35027 * 180.42850 * 10 8 7 12 12 C 1.54262 * 110.03174 * 57.13894 * 11 10 8 13 13 C 1.54886 * 104.19683 * 217.10561 * 12 11 10 14 14 C 1.54897 * 102.74863 * 37.94540 * 13 12 11 15 15 C 1.53882 * 110.03070 * 299.97643 * 11 10 8 16 16 C 1.46760 * 111.30303 * 0.40627 * 10 8 7 17 17 C 1.46494 * 120.00286 * 179.97438 * 2 1 3 18 18 C 1.53949 * 113.74112 * 38.74075 * 17 2 1 19 19 N 1.47814 * 86.03335 * 222.08163 * 18 17 2 20 20 C 1.36935 * 134.45262 * 204.63883 * 19 18 17 21 21 H 1.07998 * 119.99917 * 179.87648 * 20 19 18 22 22 C 1.38809 * 120.00280 * 359.87562 * 20 19 18 23 23 N 1.31618 * 120.00139 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00037 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47213 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47076 * 120.00392 * 24 22 20 27 27 H 1.48511 * 109.46601 * 239.99779 * 24 22 20 28 28 C 1.47580 * 91.05371 * 24.55124 * 19 18 17 29 29 H 1.09000 * 109.46790 * 90.00535 * 1 2 3 30 30 H 1.09005 * 109.47091 * 210.00056 * 1 2 3 31 31 H 1.09004 * 109.47303 * 330.00350 * 1 2 3 32 32 H 1.08998 * 110.46775 * 98.42598 * 7 5 3 33 33 H 1.08998 * 110.49332 * 335.78781 * 7 5 3 34 34 H 1.08996 * 110.01936 * 178.58596 * 11 10 8 35 35 H 1.08993 * 110.48905 * 335.78663 * 12 11 10 36 36 H 1.09002 * 110.48722 * 98.42735 * 12 11 10 37 37 H 1.09001 * 110.75962 * 279.62912 * 13 12 11 38 38 H 1.09004 * 110.91766 * 156.33415 * 13 12 11 39 39 H 1.09002 * 110.48661 * 203.37798 * 14 13 12 40 40 H 1.09003 * 110.48230 * 80.73497 * 14 13 12 41 41 H 1.09000 * 110.02784 * 238.56898 * 15 11 10 42 42 H 1.09000 * 110.03248 * 359.97438 * 15 11 10 43 43 H 1.09002 * 110.24740 * 101.98470 * 16 10 8 44 44 H 1.09002 * 110.24616 * 223.89995 * 16 10 8 45 45 H 1.08997 * 112.94280 * 170.33642 * 17 2 1 46 46 H 1.08995 * 113.77033 * 336.35365 * 18 17 2 47 47 H 1.09000 * 113.76175 * 107.74752 * 18 17 2 48 48 H 0.96998 * 120.00498 * 179.97438 * 23 22 20 49 49 H 1.08997 * 113.77119 * 221.14320 * 28 19 18 50 50 H 1.09006 * 113.87012 * 89.76326 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1674 0.0005 5 6 1.3853 2.4724 -0.0006 6 1 0.6999 2.5257 0.8453 7 6 0.6329 2.6793 -1.3382 8 6 0.7534 4.1633 -1.6062 9 8 0.0747 4.7837 -2.3972 10 7 1.7222 4.6942 -0.8405 11 6 2.0952 6.1110 -0.8436 12 6 0.8665 6.9816 -0.5090 13 6 1.0328 8.2339 -1.4052 14 6 1.5997 7.6410 -2.7191 15 6 2.5613 6.5302 -2.2489 16 6 2.3580 3.6724 -0.0006 17 6 2.1976 -1.2686 0.0006 18 6 1.5556 -2.3554 -0.8808 19 7 1.8612 -3.2877 0.2247 20 6 2.0641 -4.6392 0.3111 21 1 2.2811 -5.0927 1.2670 22 6 1.9908 -5.4264 -0.8298 23 7 1.7259 -4.8739 -1.9947 24 14 2.2669 -7.2702 -0.7118 25 1 2.5454 -7.6397 0.6992 26 1 1.0516 -7.9836 -1.1803 27 1 3.4237 -7.6528 -1.5608 28 6 1.8622 -2.1775 1.1970 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 -0.4140 2.3941 -1.2348 33 1 1.1080 2.1078 -2.1356 34 1 2.8890 6.2895 -0.1183 35 1 -0.0541 6.4540 -0.7578 36 1 0.8735 7.2626 0.5442 37 1 1.7393 8.9354 -0.9616 38 1 0.0714 8.7162 -1.5822 39 1 2.1417 8.4032 -3.2789 40 1 0.7973 7.2198 -3.3249 41 1 3.5810 6.9129 -2.2053 42 1 2.5104 5.6795 -2.9285 43 1 3.3184 3.3795 -0.4248 44 1 2.4931 4.0484 1.0136 45 1 3.2669 -1.1419 -0.1680 46 1 0.4889 -2.2099 -1.0507 47 1 2.1093 -2.5617 -1.7968 48 1 1.6751 -5.4239 -2.7921 49 1 2.6599 -2.2421 1.9369 50 1 0.8864 -1.9783 1.6401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044283047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:37 Heat of formation + Delta-G solvation = -28.296375 kcal Electronic energy + Delta-G solvation = -29700.617450 eV Core-core repulsion = 25728.769787 eV Total energy + Delta-G solvation = -3971.847662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10950 -40.93568 -39.33577 -38.33618 -37.07667 -35.97152 -34.09403 -32.94237 -29.72307 -29.63850 -28.73613 -28.40762 -27.85116 -26.60877 -25.56182 -23.69308 -22.51876 -21.58759 -21.02875 -19.84811 -19.77590 -18.88488 -18.52097 -17.82984 -17.50705 -17.09763 -16.85130 -16.37307 -16.08820 -15.86054 -15.69333 -15.34643 -15.00741 -14.68399 -14.62249 -14.29596 -14.24590 -14.08152 -13.83168 -13.57075 -13.24627 -13.17946 -12.99848 -12.84052 -12.73571 -12.58939 -12.54835 -12.42783 -12.27481 -12.03781 -12.02605 -11.94313 -11.92466 -11.81839 -11.54333 -11.46300 -10.97532 -10.89256 -10.57661 -9.65802 -9.54627 -8.96008 -7.93685 -5.27504 1.45600 1.46828 1.51185 1.57026 1.57574 1.81451 2.09755 2.48014 3.13642 3.27027 3.33226 3.42126 3.63552 3.67711 3.71623 3.82591 3.87555 4.01737 4.08261 4.30514 4.37827 4.40954 4.47381 4.50251 4.51160 4.58489 4.61393 4.63289 4.69046 4.76946 4.78585 4.79999 4.88074 4.91124 4.96276 5.02784 5.03817 5.09285 5.20628 5.22396 5.24460 5.27555 5.47477 5.48224 5.69402 5.73239 5.89232 6.12166 6.46825 6.88678 7.12801 7.17183 7.57181 8.50298 9.23506 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033118 B = 0.002148 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.270362 B =13035.057943 C =13212.277963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.523 3.477 4 O -0.579 6.579 5 C -0.106 4.106 6 H 0.154 0.846 7 C -0.141 4.141 8 C 0.515 3.485 9 O -0.560 6.560 10 N -0.610 5.610 11 C 0.147 3.853 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.121 4.121 15 C -0.133 4.133 16 C 0.117 3.883 17 C 0.117 3.883 18 C 0.160 3.840 19 N -0.639 5.639 20 C -0.232 4.232 21 H 0.087 0.913 22 C -0.067 4.067 23 N -0.953 5.953 24 Si 0.980 3.020 25 H -0.264 1.264 26 H -0.291 1.291 27 H -0.294 1.294 28 C 0.116 3.884 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.249 0.751 49 H 0.051 0.949 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 26.219 6.460 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.325 5.325 3 C 0.312 3.688 4 O -0.458 6.458 5 C -0.127 4.127 6 H 0.171 0.829 7 C -0.181 4.181 8 C 0.303 3.697 9 O -0.439 6.439 10 N -0.342 5.342 11 C 0.045 3.955 12 C -0.169 4.169 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.171 4.171 16 C -0.005 4.005 17 C 0.011 3.989 18 C 0.034 3.966 19 N -0.366 5.366 20 C -0.360 4.360 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.602 5.602 24 Si 0.808 3.192 25 H -0.188 1.188 26 H -0.218 1.218 27 H -0.221 1.221 28 C -0.010 4.010 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.129 0.871 45 H 0.112 0.888 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.918 26.285 5.974 27.113 hybrid contribution 0.144 -1.664 -0.631 1.786 sum -2.774 24.621 5.343 25.346 Atomic orbital electron populations 1.22152 0.77328 1.04766 1.03211 1.47930 1.08338 1.04754 1.71473 1.20655 0.87400 0.85644 0.75131 1.90691 1.15697 1.87683 1.51779 1.22229 0.98501 0.90955 1.01039 0.82860 1.22439 1.04778 0.93613 0.97306 1.20988 0.79204 0.90032 0.79444 1.90702 1.47941 1.68071 1.37149 1.48587 1.35630 1.08687 1.41334 1.21922 0.97976 0.77659 0.97965 1.22693 0.97398 0.96065 1.00753 1.22418 1.01447 0.96736 0.94736 1.22270 0.98273 0.97263 0.98045 1.22500 1.00222 0.98537 0.95881 1.22045 0.95608 0.85856 0.97029 1.23271 0.96859 0.81188 0.97538 1.22530 0.96835 0.84771 0.92493 1.46052 1.82305 1.02460 1.05795 1.19417 1.40312 0.81799 0.94522 0.89553 1.25650 1.02568 1.02621 0.95165 1.70001 1.56254 1.35455 0.98491 0.84987 0.76768 0.79548 0.77877 1.18779 1.21784 1.22096 1.23075 0.99387 0.85311 0.93193 0.91600 0.91122 0.87139 0.84921 0.88581 0.86460 0.92705 0.89453 0.89459 0.91491 0.90673 0.93643 0.89623 0.94036 0.90907 0.87079 0.88844 0.94322 0.94607 0.94194 0.93051 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 7.79 127.77 1.00 2.29 16 2 N -0.59 -16.08 3.09 -828.32 -2.56 -18.64 16 3 C 0.52 13.37 6.97 87.66 0.61 13.98 16 4 O -0.58 -19.64 14.98 -3.02 -0.05 -19.69 16 5 C -0.11 -1.68 2.55 -10.40 -0.03 -1.71 16 6 H 0.15 1.37 7.25 -2.39 -0.02 1.35 16 7 C -0.14 -2.47 5.49 30.67 0.17 -2.30 16 8 C 0.51 11.36 6.85 87.90 0.60 11.97 16 9 O -0.56 -16.24 15.92 -3.06 -0.05 -16.29 16 10 N -0.61 -10.81 2.83 -790.01 -2.23 -13.05 16 11 C 0.15 2.20 3.55 45.72 0.16 2.37 16 12 C -0.13 -1.89 6.29 31.67 0.20 -1.69 16 13 C -0.12 -1.51 6.91 31.89 0.22 -1.29 16 14 C -0.12 -2.02 6.83 31.67 0.22 -1.80 16 15 C -0.13 -2.29 6.02 31.32 0.19 -2.10 16 16 C 0.12 1.87 6.67 86.83 0.58 2.44 16 17 C 0.12 4.35 4.40 46.75 0.21 4.56 16 18 C 0.16 7.36 6.97 86.44 0.60 7.96 16 19 N -0.64 -32.16 3.70 -716.72 -2.65 -34.82 16 20 C -0.23 -12.88 10.70 84.03 0.90 -11.98 16 21 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 23 N -0.95 -57.23 11.39 21.65 0.25 -56.98 16 24 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 28 C 0.12 4.47 8.46 86.49 0.73 5.20 16 29 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.07 1.55 6.35 -2.38 -0.02 1.53 16 31 H 0.11 1.17 6.12 -2.39 -0.01 1.15 16 32 H 0.13 1.73 7.58 -2.39 -0.02 1.71 16 33 H 0.10 2.01 7.90 -2.39 -0.02 1.99 16 34 H 0.12 1.19 8.09 -2.39 -0.02 1.17 16 35 H 0.05 1.10 6.45 -2.39 -0.02 1.08 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.04 1.01 8.08 -2.39 -0.02 0.99 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 0.95 7.37 -2.39 -0.02 0.94 16 43 H 0.07 1.51 6.96 -2.39 -0.02 1.50 16 44 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 3.95 7.22 -2.39 -0.02 3.93 16 46 H 0.04 1.72 6.83 -2.39 -0.02 1.70 16 47 H 0.04 1.93 7.17 -2.39 -0.02 1.91 16 48 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 49 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.06 2.11 6.84 -2.38 -0.02 2.10 16 Total: -1.00 -76.04 386.17 2.48 -73.55 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.93 Total: 13.88 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 6.82 Total: 24.56 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -7.20 Total: -123.49 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.09 Total: -35.98 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.04 2.48 -73.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044283047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.257 kcal (2) G-P(sol) polarization free energy of solvation -76.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds