Wall clock time and date at job start Tue Mar 31 2020 18:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 119.99920 * 2 1 4 4 O 1.21281 * 120.00014 * 184.26334 * 3 2 1 5 5 C 1.50698 * 120.00127 * 4.25618 * 3 2 1 6 6 H 1.09000 * 110.85888 * 328.51168 * 5 3 2 7 7 C 1.54629 * 110.96971 * 92.30097 * 5 3 2 8 8 C 1.51281 * 104.31138 * 93.29246 * 7 5 3 9 9 O 1.21283 * 124.93787 * 196.28999 * 8 7 5 10 10 N 1.34742 * 109.93533 * 16.31537 * 8 7 5 11 11 C 1.46499 * 124.29574 * 180.38832 * 10 8 7 12 12 C 1.54262 * 110.03384 * 57.86591 * 11 10 8 13 13 C 1.54964 * 104.16113 * 217.13439 * 12 11 10 14 14 C 1.54885 * 102.77828 * 37.88971 * 13 12 11 15 15 C 1.53881 * 110.03321 * 300.64748 * 11 10 8 16 16 C 1.46754 * 111.35090 * 0.35408 * 10 8 7 17 17 C 1.46506 * 119.99872 * 179.97438 * 2 1 3 18 18 C 1.53944 * 113.74069 * 38.74701 * 17 2 1 19 19 N 1.47817 * 86.03111 * 222.08116 * 18 17 2 20 20 C 1.36939 * 134.45122 * 204.63815 * 19 18 17 21 21 H 1.08001 * 119.99617 * 179.86390 * 20 19 18 22 22 C 1.38814 * 120.00178 * 359.87764 * 20 19 18 23 23 N 1.31617 * 120.00182 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99652 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47552 * 89.99870 * 24 22 20 26 26 H 1.48502 * 109.46956 * 209.99551 * 24 22 20 27 27 H 1.48499 * 109.47752 * 329.99194 * 24 22 20 28 28 C 1.47578 * 91.05409 * 24.54941 * 19 18 17 29 29 H 1.08994 * 109.46952 * 85.02796 * 1 2 3 30 30 H 1.09000 * 109.46743 * 205.02035 * 1 2 3 31 31 H 1.09000 * 109.47384 * 325.02084 * 1 2 3 32 32 H 1.08998 * 110.48862 * 212.03841 * 7 5 3 33 33 H 1.08997 * 110.48565 * 334.54562 * 7 5 3 34 34 H 1.09000 * 110.01736 * 179.25778 * 11 10 8 35 35 H 1.08998 * 110.48761 * 335.78045 * 12 11 10 36 36 H 1.09003 * 110.48719 * 98.42575 * 12 11 10 37 37 H 1.09003 * 110.71761 * 279.57509 * 13 12 11 38 38 H 1.08999 * 110.92543 * 156.29652 * 13 12 11 39 39 H 1.08996 * 110.49019 * 203.40692 * 14 13 12 40 40 H 1.08994 * 110.49097 * 80.76000 * 14 13 12 41 41 H 1.08998 * 110.02827 * 238.57242 * 15 11 10 42 42 H 1.08994 * 110.03152 * 0.02562 * 15 11 10 43 43 H 1.09010 * 110.24545 * 224.01839 * 16 10 8 44 44 H 1.09001 * 110.32195 * 102.05798 * 16 10 8 45 45 H 1.08997 * 112.93686 * 170.33432 * 17 2 1 46 46 H 1.09002 * 113.76788 * 336.34317 * 18 17 2 47 47 H 1.08997 * 113.77235 * 107.74144 * 18 17 2 48 48 H 0.96993 * 120.00032 * 180.02562 * 23 22 20 49 49 H 1.08997 * 113.77230 * 221.15322 * 28 19 18 50 50 H 1.08998 * 113.87015 * 89.76267 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3492 1.1686 -0.0781 5 6 1.3885 2.4704 0.0969 6 1 0.4099 2.3910 -0.3765 7 6 1.2558 2.9245 1.5690 8 6 2.4425 3.8371 1.7873 9 8 2.8649 4.1800 2.8712 10 7 2.9584 4.2117 0.6002 11 6 4.1212 5.0893 0.4456 12 6 5.3410 4.4827 1.1692 13 6 6.0762 5.7093 1.7662 14 6 4.9091 6.6234 2.2147 15 6 3.8467 6.4501 1.1096 16 6 2.2072 3.6277 -0.5171 17 6 2.1975 -1.2688 0.0006 18 6 1.5556 -2.3554 -0.8809 19 7 1.8611 -3.2878 0.2247 20 6 2.0639 -4.6394 0.3110 21 1 2.2809 -5.0928 1.2669 22 6 1.9907 -5.4265 -0.8301 23 7 1.7259 -4.8739 -1.9949 24 14 2.2680 -7.2700 -0.7122 25 1 0.9723 -7.9505 -0.4608 26 1 2.8483 -7.7656 -1.9862 27 1 3.2039 -7.5596 0.4037 28 6 1.8621 -2.1776 1.1970 29 1 -0.3633 0.0891 -1.0237 30 1 -0.3633 -0.9312 0.4346 31 1 -0.3634 0.8420 0.5891 32 1 0.3234 3.4690 1.7178 33 1 1.3063 2.0662 2.2390 34 1 4.3456 5.2285 -0.6120 35 1 5.0177 3.8087 1.9624 36 1 5.9835 3.9595 0.4609 37 1 6.6832 6.2023 1.0068 38 1 6.6889 5.4185 2.6195 39 1 5.2367 7.6615 2.2693 40 1 4.5156 6.2955 3.1768 41 1 3.9386 7.2495 0.3745 42 1 2.8485 6.4573 1.5473 43 1 2.8926 3.2450 -1.2734 44 1 1.5405 4.3709 -0.9545 45 1 3.2669 -1.1420 -0.1680 46 1 0.4888 -2.2098 -1.0507 47 1 2.1091 -2.5618 -1.7969 48 1 1.6744 -5.4240 -2.7921 49 1 2.6599 -2.2422 1.9368 50 1 0.8863 -1.9784 1.6399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044283049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:41 Heat of formation + Delta-G solvation = -6.485351 kcal Electronic energy + Delta-G solvation = -30088.615155 eV Core-core repulsion = 26117.713289 eV Total energy + Delta-G solvation = -3970.901865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16856 -39.61659 -37.87891 -37.38453 -36.01082 -34.56959 -32.37160 -31.79728 -28.83967 -28.14994 -27.81989 -27.39961 -26.69676 -24.86633 -24.19187 -22.30776 -21.65089 -20.78973 -19.66283 -18.88002 -18.52567 -17.68814 -16.95856 -16.85363 -16.29719 -15.71723 -15.48149 -15.16609 -14.96280 -14.78030 -14.48089 -13.88053 -13.79502 -13.77856 -13.49743 -13.45343 -13.14336 -12.58078 -12.53390 -12.15539 -12.10811 -11.85644 -11.80825 -11.72603 -11.58415 -11.49218 -11.34478 -11.27138 -11.17043 -11.00397 -10.92946 -10.73439 -10.69160 -10.31485 -10.10493 -9.71459 -9.61309 -9.52335 -8.85071 -8.74572 -8.21781 -6.96236 -5.83252 -3.16147 2.48798 2.66829 2.87789 3.13809 3.36812 3.41870 3.43673 4.08695 4.22552 4.34904 4.44179 4.46349 4.48703 4.65451 4.77173 5.02488 5.14160 5.14526 5.17728 5.23327 5.30660 5.33070 5.36599 5.38445 5.40345 5.45335 5.50458 5.55581 5.56873 5.67831 5.68887 5.78958 5.81255 5.85480 6.01069 6.03102 6.10917 6.11639 6.26331 6.38151 6.52556 6.59067 6.70345 7.03783 7.13908 7.27315 7.46665 7.67370 7.90816 8.11958 8.33548 8.98043 9.64076 10.50301 11.34015 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.002416 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.816260 B =11585.772189 C =11966.920750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.597 5.597 3 C 0.516 3.484 4 O -0.534 6.534 5 C -0.127 4.127 6 H 0.119 0.881 7 C -0.142 4.142 8 C 0.524 3.476 9 O -0.525 6.525 10 N -0.607 5.607 11 C 0.157 3.843 12 C -0.133 4.133 13 C -0.121 4.121 14 C -0.120 4.120 15 C -0.130 4.130 16 C 0.121 3.879 17 C 0.090 3.910 18 C 0.158 3.842 19 N -0.606 5.606 20 C -0.223 4.223 21 H 0.082 0.918 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.108 3.892 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.032 0.968 47 H 0.076 0.924 48 H 0.255 0.745 49 H 0.046 0.954 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 23.769 2.389 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.329 5.329 3 C 0.302 3.698 4 O -0.410 6.410 5 C -0.149 4.149 6 H 0.137 0.863 7 C -0.183 4.183 8 C 0.311 3.689 9 O -0.402 6.402 10 N -0.341 5.341 11 C 0.054 3.946 12 C -0.171 4.171 13 C -0.159 4.159 14 C -0.157 4.157 15 C -0.168 4.168 16 C -0.002 4.002 17 C -0.013 4.013 18 C 0.032 3.968 19 N -0.333 5.333 20 C -0.351 4.351 21 H 0.100 0.900 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.019 4.019 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.133 0.867 46 H 0.050 0.950 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.028 23.629 2.766 23.813 hybrid contribution -0.269 -1.245 -0.152 1.283 sum -1.297 22.384 2.614 22.573 Atomic orbital electron populations 1.21836 0.79860 1.03385 1.01804 1.48026 1.06940 1.06142 1.71774 1.20179 0.87888 0.84859 0.76826 1.90714 1.13870 1.87075 1.49380 1.22386 1.01254 0.93627 0.97636 0.86342 1.22286 0.99231 1.00967 0.95776 1.20684 0.84125 0.80327 0.83742 1.90704 1.64869 1.58233 1.26351 1.48381 1.30170 1.48736 1.06813 1.21631 0.84217 0.88600 1.00116 1.22712 0.95707 0.98127 1.00541 1.22432 0.97252 0.95900 1.00291 1.22286 0.95289 0.98974 0.99173 1.22476 1.00249 0.95952 0.98133 1.21943 0.94949 0.93467 0.89872 1.24067 0.98060 0.79720 0.99478 1.22660 0.96832 0.83454 0.93878 1.45705 1.81961 1.02199 1.03394 1.18997 1.41516 0.80191 0.94353 0.90038 1.24803 1.01885 0.98318 0.95338 1.69807 1.54592 1.34333 0.98044 0.86083 0.77793 0.84656 0.77012 1.21551 1.21552 1.20529 1.22972 0.98064 0.87343 0.93533 0.92293 0.89969 0.91692 0.86908 0.87694 0.89176 0.90186 0.91275 0.91687 0.91487 0.92078 0.90857 0.91488 0.91313 0.89345 0.90390 0.86681 0.95014 0.90534 0.93528 0.93538 0.94668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 8.51 59.85 0.51 1.33 16 2 N -0.60 -8.83 3.09 -175.76 -0.54 -9.38 16 3 C 0.52 7.39 6.71 -10.99 -0.07 7.31 16 4 O -0.53 -9.77 15.53 5.56 0.09 -9.69 16 5 C -0.13 -1.19 2.56 -90.14 -0.23 -1.43 16 6 H 0.12 0.74 6.72 -51.93 -0.35 0.39 16 7 C -0.14 -1.37 6.26 -26.74 -0.17 -1.54 16 8 C 0.52 6.70 6.84 -10.72 -0.07 6.63 16 9 O -0.53 -8.37 15.95 5.55 0.09 -8.28 16 10 N -0.61 -6.71 2.84 -163.48 -0.46 -7.17 16 11 C 0.16 1.60 3.55 -66.81 -0.24 1.37 16 12 C -0.13 -1.54 6.30 -25.03 -0.16 -1.70 16 13 C -0.12 -1.16 6.91 -24.70 -0.17 -1.33 16 14 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 15 C -0.13 -1.20 6.01 -25.61 -0.15 -1.35 16 16 C 0.12 1.09 6.51 -3.13 -0.02 1.07 16 17 C 0.09 1.73 4.41 -70.15 -0.31 1.42 16 18 C 0.16 3.59 6.93 -2.84 -0.02 3.57 16 19 N -0.61 -15.34 3.70 -177.91 -0.66 -16.00 16 20 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.90 11.39 55.49 0.63 -26.27 16 24 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.11 2.20 8.44 -2.97 -0.03 2.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 31 H 0.06 0.50 6.55 -51.93 -0.34 0.16 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.13 7.90 -51.93 -0.41 0.72 16 34 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.08 1.19 6.51 -51.93 -0.34 0.85 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.72 7.33 -51.93 -0.38 0.34 16 43 H 0.09 0.90 7.51 -51.92 -0.39 0.51 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.12 2.46 7.21 -51.93 -0.37 2.09 16 46 H 0.03 0.70 6.72 -51.93 -0.35 0.35 16 47 H 0.08 1.97 7.17 -51.93 -0.37 1.60 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 50 H 0.04 0.67 6.92 -51.93 -0.36 0.31 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -34.56 388.59 -9.76 -44.32 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.17 Total: 0.11 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -1.56 Total: 9.56 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -1.03 Total: -58.82 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.17 Total: -17.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.56 -9.76 -44.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044283049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.834 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds