Wall clock time and date at job start Tue Mar 31 2020 18:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 119.99920 * 2 1 4 4 O 1.21281 * 120.00014 * 184.26334 * 3 2 1 5 5 C 1.50698 * 120.00127 * 4.25618 * 3 2 1 6 6 H 1.09000 * 110.85888 * 328.51168 * 5 3 2 7 7 C 1.54629 * 110.96971 * 92.30097 * 5 3 2 8 8 C 1.51281 * 104.31138 * 93.29246 * 7 5 3 9 9 O 1.21283 * 124.93787 * 196.28999 * 8 7 5 10 10 N 1.34742 * 109.93533 * 16.31537 * 8 7 5 11 11 C 1.46499 * 124.29574 * 180.38832 * 10 8 7 12 12 C 1.54262 * 110.03384 * 57.86591 * 11 10 8 13 13 C 1.54964 * 104.16113 * 217.13439 * 12 11 10 14 14 C 1.54885 * 102.77828 * 37.88971 * 13 12 11 15 15 C 1.53881 * 110.03321 * 300.64748 * 11 10 8 16 16 C 1.46754 * 111.35090 * 0.35408 * 10 8 7 17 17 C 1.46506 * 119.99872 * 179.97438 * 2 1 3 18 18 C 1.53944 * 113.74069 * 38.74701 * 17 2 1 19 19 N 1.47817 * 86.03111 * 222.08116 * 18 17 2 20 20 C 1.36939 * 134.45122 * 204.63815 * 19 18 17 21 21 H 1.08001 * 119.99617 * 179.86390 * 20 19 18 22 22 C 1.38814 * 120.00178 * 359.87764 * 20 19 18 23 23 N 1.31617 * 120.00182 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99652 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47552 * 89.99870 * 24 22 20 26 26 H 1.48502 * 109.46956 * 209.99551 * 24 22 20 27 27 H 1.48499 * 109.47752 * 329.99194 * 24 22 20 28 28 C 1.47578 * 91.05409 * 24.54941 * 19 18 17 29 29 H 1.08994 * 109.46952 * 85.02796 * 1 2 3 30 30 H 1.09000 * 109.46743 * 205.02035 * 1 2 3 31 31 H 1.09000 * 109.47384 * 325.02084 * 1 2 3 32 32 H 1.08998 * 110.48862 * 212.03841 * 7 5 3 33 33 H 1.08997 * 110.48565 * 334.54562 * 7 5 3 34 34 H 1.09000 * 110.01736 * 179.25778 * 11 10 8 35 35 H 1.08998 * 110.48761 * 335.78045 * 12 11 10 36 36 H 1.09003 * 110.48719 * 98.42575 * 12 11 10 37 37 H 1.09003 * 110.71761 * 279.57509 * 13 12 11 38 38 H 1.08999 * 110.92543 * 156.29652 * 13 12 11 39 39 H 1.08996 * 110.49019 * 203.40692 * 14 13 12 40 40 H 1.08994 * 110.49097 * 80.76000 * 14 13 12 41 41 H 1.08998 * 110.02827 * 238.57242 * 15 11 10 42 42 H 1.08994 * 110.03152 * 0.02562 * 15 11 10 43 43 H 1.09010 * 110.24545 * 224.01839 * 16 10 8 44 44 H 1.09001 * 110.32195 * 102.05798 * 16 10 8 45 45 H 1.08997 * 112.93686 * 170.33432 * 17 2 1 46 46 H 1.09002 * 113.76788 * 336.34317 * 18 17 2 47 47 H 1.08997 * 113.77235 * 107.74144 * 18 17 2 48 48 H 0.96993 * 120.00032 * 180.02562 * 23 22 20 49 49 H 1.08997 * 113.77230 * 221.15322 * 28 19 18 50 50 H 1.08998 * 113.87015 * 89.76267 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3492 1.1686 -0.0781 5 6 1.3885 2.4704 0.0969 6 1 0.4099 2.3910 -0.3765 7 6 1.2558 2.9245 1.5690 8 6 2.4425 3.8371 1.7873 9 8 2.8649 4.1800 2.8712 10 7 2.9584 4.2117 0.6002 11 6 4.1212 5.0893 0.4456 12 6 5.3410 4.4827 1.1692 13 6 6.0762 5.7093 1.7662 14 6 4.9091 6.6234 2.2147 15 6 3.8467 6.4501 1.1096 16 6 2.2072 3.6277 -0.5171 17 6 2.1975 -1.2688 0.0006 18 6 1.5556 -2.3554 -0.8809 19 7 1.8611 -3.2878 0.2247 20 6 2.0639 -4.6394 0.3110 21 1 2.2809 -5.0928 1.2669 22 6 1.9907 -5.4265 -0.8301 23 7 1.7259 -4.8739 -1.9949 24 14 2.2680 -7.2700 -0.7122 25 1 0.9723 -7.9505 -0.4608 26 1 2.8483 -7.7656 -1.9862 27 1 3.2039 -7.5596 0.4037 28 6 1.8621 -2.1776 1.1970 29 1 -0.3633 0.0891 -1.0237 30 1 -0.3633 -0.9312 0.4346 31 1 -0.3634 0.8420 0.5891 32 1 0.3234 3.4690 1.7178 33 1 1.3063 2.0662 2.2390 34 1 4.3456 5.2285 -0.6120 35 1 5.0177 3.8087 1.9624 36 1 5.9835 3.9595 0.4609 37 1 6.6832 6.2023 1.0068 38 1 6.6889 5.4185 2.6195 39 1 5.2367 7.6615 2.2693 40 1 4.5156 6.2955 3.1768 41 1 3.9386 7.2495 0.3745 42 1 2.8485 6.4573 1.5473 43 1 2.8926 3.2450 -1.2734 44 1 1.5405 4.3709 -0.9545 45 1 3.2669 -1.1420 -0.1680 46 1 0.4888 -2.2098 -1.0507 47 1 2.1091 -2.5618 -1.7969 48 1 1.6744 -5.4240 -2.7921 49 1 2.6599 -2.2422 1.9368 50 1 0.8863 -1.9784 1.6399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044283049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:40 Heat of formation + Delta-G solvation = -29.154052 kcal Electronic energy + Delta-G solvation = -30089.598143 eV Core-core repulsion = 26117.713289 eV Total energy + Delta-G solvation = -3971.884854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.10745 -40.85231 -39.31354 -38.31763 -37.00301 -35.93773 -34.08569 -32.93360 -29.76008 -29.65122 -28.65958 -28.40531 -27.83002 -26.63637 -25.61437 -23.69186 -22.49715 -21.59127 -21.05468 -19.88619 -19.72509 -18.92684 -18.57379 -17.80408 -17.54245 -16.98976 -16.63288 -16.40057 -16.19885 -15.87958 -15.69060 -15.37593 -14.95962 -14.79906 -14.52928 -14.30082 -14.12581 -13.93931 -13.62988 -13.50303 -13.29773 -13.17179 -12.98999 -12.89812 -12.82065 -12.62775 -12.59237 -12.54099 -12.28157 -12.07385 -12.04325 -11.98600 -11.96964 -11.85882 -11.56559 -11.46396 -10.89328 -10.74122 -10.64308 -9.58570 -9.52729 -8.97879 -7.95143 -5.29112 1.44515 1.46604 1.49728 1.55269 1.64742 1.95331 2.11365 2.46886 3.23527 3.29561 3.36698 3.42068 3.52768 3.67039 3.68862 3.82003 3.89020 4.01137 4.23955 4.33765 4.37854 4.39439 4.46397 4.48882 4.52700 4.58606 4.62807 4.68720 4.69650 4.74996 4.76938 4.81164 4.83860 4.89468 4.90680 4.98954 5.04486 5.09277 5.18054 5.19479 5.23857 5.26353 5.45372 5.46472 5.69636 5.76908 5.87824 6.21018 6.49934 6.87400 7.18734 7.22034 7.55027 8.48455 9.21876 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.002416 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.816260 B =11585.772189 C =11966.920750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.597 5.597 3 C 0.510 3.490 4 O -0.582 6.582 5 C -0.112 4.112 6 H 0.167 0.833 7 C -0.134 4.134 8 C 0.506 3.494 9 O -0.570 6.570 10 N -0.609 5.609 11 C 0.150 3.850 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.122 4.122 16 C 0.118 3.882 17 C 0.116 3.884 18 C 0.164 3.836 19 N -0.638 5.638 20 C -0.237 4.237 21 H 0.083 0.917 22 C -0.064 4.064 23 N -0.952 5.952 24 Si 0.981 3.019 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.271 1.271 28 C 0.114 3.886 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.037 0.963 48 H 0.250 0.750 49 H 0.043 0.957 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 25.864 1.955 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.329 5.329 3 C 0.299 3.701 4 O -0.462 6.462 5 C -0.133 4.133 6 H 0.185 0.815 7 C -0.174 4.174 8 C 0.295 3.705 9 O -0.450 6.450 10 N -0.341 5.341 11 C 0.047 3.953 12 C -0.174 4.174 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.160 4.160 16 C -0.004 4.004 17 C 0.011 3.989 18 C 0.038 3.962 19 N -0.365 5.365 20 C -0.365 4.365 21 H 0.101 0.899 22 C -0.257 4.257 23 N -0.600 5.600 24 Si 0.809 3.191 25 H -0.209 1.209 26 H -0.220 1.220 27 H -0.196 1.196 28 C -0.012 4.012 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.174 0.826 33 H 0.111 0.889 34 H 0.130 0.870 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.142 0.858 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.119 25.758 2.333 26.051 hybrid contribution 0.426 -1.858 0.007 1.906 sum -2.693 23.900 2.340 24.165 Atomic orbital electron populations 1.22146 0.76960 1.04617 1.03730 1.47996 1.08535 1.04605 1.71735 1.21140 0.87603 0.86144 0.75169 1.90704 1.16403 1.87839 1.51257 1.22457 1.02589 0.90215 0.98075 0.81529 1.22343 0.99602 1.00194 0.95305 1.21344 0.85009 0.80566 0.83555 1.90678 1.66355 1.59974 1.27973 1.48560 1.30135 1.48324 1.07124 1.21803 0.83411 0.88888 1.01152 1.22677 0.96977 0.98388 0.99401 1.22433 0.97323 0.95086 1.00554 1.22262 0.95354 0.99970 0.98048 1.22435 0.99185 0.96061 0.98305 1.22203 0.95182 0.94276 0.88780 1.23206 0.96689 0.81593 0.97443 1.22518 0.96939 0.84413 0.92331 1.46028 1.82391 1.02394 1.05714 1.19362 1.40810 0.81806 0.94528 0.89883 1.25640 1.02368 1.02648 0.95080 1.69986 1.56007 1.35548 0.98455 0.85047 0.77842 0.79431 0.76810 1.20866 1.21973 1.19575 1.23076 0.99139 0.85763 0.93257 0.90621 0.91500 0.87116 0.82641 0.88852 0.87005 0.94282 0.91864 0.89349 0.92246 0.89903 0.93736 0.88704 0.92568 0.90748 0.85801 0.89575 0.93930 0.94491 0.94055 0.93883 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 8.51 127.77 1.09 2.32 16 2 N -0.60 -16.77 3.09 -828.36 -2.56 -19.33 16 3 C 0.51 13.86 6.71 87.66 0.59 14.45 16 4 O -0.58 -21.71 15.53 -3.03 -0.05 -21.76 16 5 C -0.11 -1.67 2.56 -10.48 -0.03 -1.70 16 6 H 0.17 0.95 6.72 -2.39 -0.02 0.94 16 7 C -0.13 -2.15 6.26 30.59 0.19 -1.96 16 8 C 0.51 12.50 6.84 87.85 0.60 13.10 16 9 O -0.57 -18.66 15.95 -3.04 -0.05 -18.71 16 10 N -0.61 -12.50 2.84 -789.55 -2.24 -14.74 16 11 C 0.15 2.89 3.55 45.72 0.16 3.05 16 12 C -0.14 -3.28 6.30 31.69 0.20 -3.08 16 13 C -0.12 -2.20 6.91 31.91 0.22 -1.98 16 14 C -0.12 -2.19 6.83 31.67 0.22 -1.98 16 15 C -0.12 -2.03 6.01 31.32 0.19 -1.84 16 16 C 0.12 1.73 6.51 86.83 0.56 2.29 16 17 C 0.12 4.54 4.41 46.75 0.21 4.74 16 18 C 0.16 7.63 6.93 86.44 0.60 8.23 16 19 N -0.64 -32.91 3.70 -716.78 -2.65 -35.57 16 20 C -0.24 -13.40 10.70 84.03 0.90 -12.50 16 21 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 22 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 23 N -0.95 -57.03 11.39 21.65 0.25 -56.78 16 24 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 C 0.11 4.64 8.44 86.49 0.73 5.37 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.49 6.16 -2.39 -0.01 1.48 16 31 H 0.11 1.06 6.55 -2.39 -0.02 1.05 16 32 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.78 7.90 -2.39 -0.02 1.76 16 34 H 0.11 1.65 8.09 -2.39 -0.02 1.63 16 35 H 0.04 1.26 6.51 -2.39 -0.02 1.24 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.04 1.07 8.06 -2.39 -0.02 1.05 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.10 7.33 -2.39 -0.02 1.08 16 43 H 0.07 1.35 7.51 -2.38 -0.02 1.34 16 44 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 3.88 7.21 -2.39 -0.02 3.87 16 46 H 0.04 1.88 6.72 -2.39 -0.02 1.86 16 47 H 0.04 2.00 7.17 -2.39 -0.02 1.98 16 48 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 49 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.06 2.26 6.92 -2.39 -0.02 2.24 16 Total: -1.00 -82.05 388.59 2.55 -79.50 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.93 Total: 14.30 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.89 Total: 25.32 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -7.21 Total: -126.42 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.10 Total: -40.47 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -82.05 2.55 -79.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044283049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.344 kcal (2) G-P(sol) polarization free energy of solvation -82.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds