Wall clock time and date at job start Tue Mar 31 2020 18:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00021 * 2 1 4 4 C 1.34777 * 119.99848 * 180.02562 * 2 1 3 5 5 O 1.21282 * 120.00291 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99899 * 179.97438 * 4 2 1 7 7 H 1.09003 * 115.56282 * 308.52155 * 6 4 2 8 8 C 1.53077 * 117.51131 * 162.82526 * 6 4 2 9 9 C 1.52992 * 117.50132 * 94.21469 * 6 4 2 10 10 H 1.08998 * 117.50318 * 215.00460 * 9 6 4 11 11 C 1.50706 * 117.49825 * 359.97438 * 9 6 4 12 12 O 1.21283 * 119.99822 * 330.10018 * 11 9 6 13 13 N 1.34771 * 119.99963 * 150.09040 * 11 9 6 14 14 C 1.44894 * 120.25082 * 359.88200 * 13 11 9 15 15 C 1.51509 * 112.30218 * 264.55107 * 14 13 11 16 16 C 1.51315 * 113.25449 * 285.34254 * 15 14 13 17 17 H 1.09003 * 112.00177 * 185.69570 * 16 15 14 18 18 C 1.54715 * 106.48281 * 307.67026 * 16 15 14 19 19 C 1.54238 * 104.37741 * 89.11006 * 18 16 15 20 20 C 1.50866 * 105.27396 * 11.56416 * 19 18 16 21 21 H 1.09000 * 105.90454 * 122.19340 * 20 19 18 22 22 C 1.49819 * 120.18264 * 180.02562 * 13 11 9 23 23 N 1.48066 * 109.90758 * 7.87152 * 20 19 18 24 24 C 1.36937 * 127.84533 * 155.16507 * 23 20 19 25 25 H 1.08006 * 119.99297 * 346.55605 * 24 23 20 26 26 C 1.38802 * 120.00366 * 166.55940 * 24 23 20 27 27 N 1.31614 * 120.00322 * 355.50925 * 26 24 23 28 28 Si 1.86808 * 120.00013 * 175.51071 * 26 24 23 29 29 H 1.48494 * 109.47125 * 94.91049 * 28 26 24 30 30 H 1.48504 * 109.46722 * 214.91145 * 28 26 24 31 31 H 1.48497 * 109.46976 * 334.90648 * 28 26 24 32 32 H 1.09006 * 109.46860 * 269.99550 * 1 2 3 33 33 H 1.09005 * 109.47154 * 29.99363 * 1 2 3 34 34 H 1.09003 * 109.47650 * 149.99814 * 1 2 3 35 35 H 1.08999 * 109.47218 * 240.00045 * 3 2 1 36 36 H 1.09000 * 109.47213 * 0.02562 * 3 2 1 37 37 H 1.09000 * 109.46820 * 120.00808 * 3 2 1 38 38 H 1.08997 * 117.49470 * 145.03850 * 8 6 4 39 39 H 1.08997 * 117.53097 * 359.97438 * 8 6 4 40 40 H 1.08999 * 108.90508 * 143.80783 * 14 13 11 41 41 H 1.08998 * 108.80053 * 25.22415 * 14 13 11 42 42 H 1.09004 * 108.72639 * 164.37072 * 15 14 13 43 43 H 1.08996 * 108.63301 * 46.25191 * 15 14 13 44 44 H 1.08997 * 110.45027 * 207.83301 * 18 16 15 45 45 H 1.09001 * 110.45192 * 330.38293 * 18 16 15 46 46 H 1.08998 * 110.27995 * 252.61707 * 19 18 16 47 47 H 1.09000 * 110.28471 * 130.51390 * 19 18 16 48 48 H 1.09002 * 109.54519 * 30.81290 * 22 13 11 49 49 H 1.09002 * 109.54551 * 270.63218 * 22 13 11 50 50 H 0.97001 * 120.00613 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0015 6 6 3.6458 -1.1672 -0.0011 7 1 4.1159 -0.5546 -0.7705 8 6 4.3531 -2.4645 0.3992 9 6 4.3528 -1.2673 1.3520 10 1 5.2877 -0.7202 1.4731 11 6 3.4889 -1.3577 2.5835 12 8 2.3954 -0.8332 2.5969 13 7 3.9313 -2.0215 3.6697 14 6 5.2356 -2.6525 3.6586 15 6 5.1608 -4.1210 3.2936 16 6 4.6247 -4.9880 4.4120 17 1 4.6724 -6.0486 4.1651 18 6 5.4720 -4.6619 5.6648 19 6 4.7286 -3.4884 6.3351 20 6 3.3969 -3.4074 5.6308 21 1 2.6407 -3.5188 6.4080 22 6 3.0756 -2.1144 4.8960 23 7 3.2336 -4.5680 4.7260 24 6 2.0662 -5.1277 4.2797 25 1 1.1288 -4.8677 4.7489 26 6 2.0876 -6.0290 3.2243 27 7 3.2163 -6.2789 2.5951 28 14 0.5145 -6.8874 2.6971 29 1 -0.1095 -6.1346 1.5794 30 1 0.8301 -8.2676 2.2490 31 1 -0.4275 -6.9425 3.8437 32 1 -0.3633 -0.0001 1.0277 33 1 -0.3634 0.8901 -0.5138 34 1 -0.3634 -0.8900 -0.5139 35 1 2.8241 1.3265 -0.8900 36 1 1.4892 2.0972 0.0005 37 1 2.8242 1.3263 0.8899 38 1 5.2881 -2.7047 -0.1068 39 1 3.7286 -3.3179 0.6635 40 1 5.6829 -2.5562 4.6479 41 1 5.8677 -2.1396 2.9337 42 1 6.1602 -4.4676 3.0305 43 1 4.5128 -4.2312 2.4242 44 1 5.5087 -5.5215 6.3340 45 1 6.4786 -4.3598 5.3757 46 1 5.2852 -2.5613 6.1986 47 1 4.5832 -3.6901 7.3963 48 1 2.0242 -2.1099 4.6082 49 1 3.2789 -1.2647 5.5478 50 1 3.2312 -6.9085 1.8573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045848576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:30 Heat of formation + Delta-G solvation = 13.879268 kcal Electronic energy + Delta-G solvation = -32468.150146 eV Core-core repulsion = 28498.131356 eV Total energy + Delta-G solvation = -3970.018789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.39081 -39.36157 -37.92856 -35.72455 -35.01546 -34.18897 -32.50954 -32.01023 -29.27656 -28.18529 -27.35899 -26.30550 -25.89880 -24.45670 -23.38268 -22.70786 -21.76603 -19.83630 -19.15751 -18.80841 -17.86414 -17.20354 -16.86276 -16.05695 -15.83676 -15.46597 -15.21380 -14.79650 -14.55638 -14.37006 -14.04743 -13.77340 -13.29163 -12.88982 -12.75482 -12.63449 -12.54834 -12.42302 -12.33156 -12.01223 -11.84150 -11.78515 -11.68684 -11.44478 -11.26948 -11.11976 -10.82583 -10.70981 -10.59169 -10.35229 -10.30192 -10.17954 -9.91797 -9.71589 -9.47506 -9.41523 -9.24403 -8.96306 -8.54697 -8.29659 -7.87046 -6.72527 -5.68083 -3.01940 2.93796 3.14550 3.27265 3.49161 3.54557 3.59417 3.64427 4.10552 4.56140 4.73379 4.90651 4.97778 5.09816 5.20615 5.28907 5.33621 5.41352 5.45822 5.47428 5.49891 5.57996 5.67521 5.75555 5.76747 5.81236 5.88627 5.89535 5.97263 6.10220 6.13835 6.22004 6.26911 6.31330 6.33231 6.50776 6.54473 6.61936 6.73314 6.80010 6.85549 6.93705 7.06456 7.27635 7.62796 7.70500 7.75380 7.89619 8.14867 8.30175 8.66370 8.81741 9.24030 9.84843 10.59180 11.44445 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.005789 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.308458 B = 4835.235642 C = 6069.227591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.611 5.611 3 C 0.092 3.908 4 C 0.557 3.443 5 O -0.526 6.526 6 C -0.166 4.166 7 H 0.126 0.874 8 C -0.119 4.119 9 C -0.159 4.159 10 H 0.128 0.872 11 C 0.540 3.460 12 O -0.543 6.543 13 N -0.577 5.577 14 C 0.107 3.893 15 C -0.143 4.143 16 C 0.188 3.812 17 H 0.101 0.899 18 C -0.145 4.145 19 C -0.115 4.115 20 C 0.131 3.869 21 H 0.037 0.963 22 C 0.119 3.881 23 N -0.575 5.575 24 C -0.217 4.217 25 H 0.072 0.928 26 C 0.003 3.997 27 N -0.911 5.911 28 Si 0.906 3.094 29 H -0.286 1.286 30 H -0.292 1.292 31 H -0.283 1.283 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.046 0.954 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 13.589 -1.863 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.345 5.345 3 C -0.052 4.052 4 C 0.344 3.656 5 O -0.401 6.401 6 C -0.188 4.188 7 H 0.144 0.856 8 C -0.156 4.156 9 C -0.181 4.181 10 H 0.146 0.854 11 C 0.327 3.673 12 O -0.421 6.421 13 N -0.309 5.309 14 C -0.016 4.016 15 C -0.183 4.183 16 C 0.081 3.919 17 H 0.119 0.881 18 C -0.184 4.184 19 C -0.153 4.153 20 C 0.023 3.977 21 H 0.055 0.945 22 C -0.004 4.004 23 N -0.298 5.298 24 C -0.345 4.345 25 H 0.090 0.910 26 C -0.194 4.194 27 N -0.558 5.558 28 Si 0.736 3.264 29 H -0.213 1.213 30 H -0.218 1.218 31 H -0.209 1.209 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.065 0.935 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.278 13.098 -1.987 14.661 hybrid contribution -0.658 -0.155 -0.384 0.778 sum 5.620 12.943 -2.372 14.309 Atomic orbital electron populations 1.21534 0.79644 1.01969 1.01817 1.47306 1.06489 1.06013 1.74688 1.21612 0.96999 0.85306 1.01270 1.19273 0.88064 0.83152 0.75085 1.90753 1.69604 1.30999 1.48795 1.22222 0.92894 1.04934 0.98746 0.85627 1.23141 1.01943 0.92063 0.98495 1.22213 1.00784 1.05741 0.89323 0.85431 1.19412 0.86056 0.78739 0.83074 1.90658 1.21090 1.48129 1.82240 1.47999 1.18154 1.51025 1.13673 1.21211 0.83433 0.95309 1.01641 1.21992 1.00039 0.92674 1.03631 1.20996 0.82772 0.99284 0.88801 0.88082 1.22896 0.98479 0.97172 0.99824 1.21772 0.96232 0.98645 0.98685 1.20565 0.95922 0.88256 0.92998 0.94504 1.22497 0.95692 0.97453 0.84798 1.45006 1.01671 1.28593 1.54512 1.18836 0.84611 1.19832 1.11179 0.91017 1.24708 0.96977 1.00987 0.96687 1.69836 1.24043 1.37973 1.23898 0.86195 0.82873 0.78634 0.78668 1.21342 1.21802 1.20852 0.92834 0.92060 0.91004 0.92933 0.91221 0.92035 0.87416 0.85949 0.90909 0.92576 0.93931 0.88956 0.92731 0.92312 0.91970 0.92225 0.90346 0.93539 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.41 59.85 0.62 2.00 16 2 N -0.61 -9.76 2.97 -189.51 -0.56 -10.32 16 3 C 0.09 1.04 9.74 59.85 0.58 1.62 16 4 C 0.56 10.74 5.09 -10.99 -0.06 10.68 16 5 O -0.53 -12.96 15.99 5.56 0.09 -12.87 16 6 C -0.17 -2.57 4.97 -91.74 -0.46 -3.02 16 7 H 0.13 1.43 7.79 -51.93 -0.40 1.02 16 8 C -0.12 -1.96 9.15 -26.69 -0.24 -2.20 16 9 C -0.16 -2.47 4.40 -91.77 -0.40 -2.88 16 10 H 0.13 1.51 7.78 -51.93 -0.40 1.11 16 11 C 0.54 10.70 7.14 -10.98 -0.08 10.62 16 12 O -0.54 -12.30 14.30 5.56 0.08 -12.22 16 13 N -0.58 -11.09 2.88 -173.59 -0.50 -11.59 16 14 C 0.11 1.81 5.01 -5.66 -0.03 1.78 16 15 C -0.14 -2.84 4.81 -28.34 -0.14 -2.98 16 16 C 0.19 4.11 2.87 -66.68 -0.19 3.92 16 17 H 0.10 2.58 6.57 -51.93 -0.34 2.23 16 18 C -0.14 -2.50 6.02 -25.18 -0.15 -2.65 16 19 C -0.12 -1.87 5.78 -27.15 -0.16 -2.03 16 20 C 0.13 2.62 2.62 -68.57 -0.18 2.44 16 21 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 22 C 0.12 2.36 6.02 -2.62 -0.02 2.34 16 23 N -0.58 -13.95 2.69 -156.96 -0.42 -14.37 16 24 C -0.22 -6.04 10.35 -15.06 -0.16 -6.20 16 25 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 26 C 0.00 0.10 5.46 -17.44 -0.10 0.00 16 27 N -0.91 -25.73 9.54 55.49 0.53 -25.20 16 28 Si 0.91 23.38 29.56 -169.99 -5.02 18.35 16 29 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 30 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 31 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 34 H 0.07 1.17 7.42 -51.93 -0.39 0.78 16 35 H 0.05 0.47 7.80 -51.93 -0.41 0.07 16 36 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 37 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.12 2.70 6.99 -51.93 -0.36 2.34 16 40 H 0.07 1.12 3.93 -51.93 -0.20 0.92 16 41 H 0.06 0.80 6.41 -51.93 -0.33 0.47 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 2.21 5.62 -51.93 -0.29 1.92 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.87 7.38 -51.93 -0.38 0.49 16 46 H 0.06 0.89 6.14 -51.93 -0.32 0.57 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.08 1.82 7.53 -51.93 -0.39 1.43 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -35.11 377.32 -9.23 -44.34 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.96 Total: 4.74 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -1.14 Total: 13.45 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.95 Total: -61.48 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.17 Total: -25.08 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.11 -9.23 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045848576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.222 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds