Wall clock time and date at job start Tue Mar 31 2020 18:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 119.99980 * 2 1 4 4 C 1.34771 * 119.99722 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00647 * 0.02562 * 4 2 1 6 6 C 1.50703 * 120.00047 * 180.02562 * 4 2 1 7 7 H 1.09004 * 115.54908 * 304.36472 * 6 4 2 8 8 C 1.53070 * 117.51823 * 158.63971 * 6 4 2 9 9 C 1.53002 * 59.98716 * 252.52580 * 8 6 4 10 10 H 1.08997 * 117.49470 * 252.50298 * 9 8 6 11 11 C 1.50698 * 117.50107 * 107.49778 * 9 8 6 12 12 O 1.21286 * 120.00162 * 286.60141 * 11 9 8 13 13 N 1.34777 * 119.99850 * 106.60077 * 11 9 8 14 14 C 1.46799 * 119.57651 * 0.02562 * 13 11 9 15 15 C 1.53462 * 107.59985 * 127.95891 * 14 13 11 16 16 C 1.52740 * 108.43550 * 58.07605 * 15 14 13 17 17 C 1.53008 * 110.79982 * 296.22322 * 16 15 14 18 18 H 1.09001 * 111.38379 * 290.29048 * 17 16 15 19 19 C 1.45120 * 119.57346 * 180.02562 * 13 11 9 20 20 H 1.09003 * 109.97115 * 348.05267 * 19 13 11 21 21 C 1.54418 * 111.61148 * 111.33583 * 19 13 11 22 22 C 1.54570 * 102.44895 * 156.58308 * 21 19 13 23 23 N 1.47126 * 107.24923 * 338.32244 * 22 21 19 24 24 C 1.36936 * 125.76469 * 177.67505 * 23 22 21 25 25 H 1.08004 * 120.00027 * 173.14939 * 24 23 22 26 26 C 1.38809 * 119.99858 * 353.13958 * 24 23 22 27 27 N 1.31616 * 120.00302 * 352.30998 * 26 24 23 28 28 Si 1.86809 * 119.99738 * 172.30928 * 26 24 23 29 29 H 1.48493 * 109.47177 * 94.95535 * 28 26 24 30 30 H 1.48501 * 109.46948 * 214.95759 * 28 26 24 31 31 H 1.48495 * 109.47068 * 334.95327 * 28 26 24 32 32 H 1.09000 * 109.47173 * 270.00551 * 1 2 3 33 33 H 1.09000 * 109.46633 * 30.00342 * 1 2 3 34 34 H 1.08996 * 109.46881 * 150.00517 * 1 2 3 35 35 H 1.09008 * 109.46968 * 269.99791 * 3 2 1 36 36 H 1.09001 * 109.47547 * 29.99467 * 3 2 1 37 37 H 1.09004 * 109.47219 * 149.99895 * 3 2 1 38 38 H 1.08997 * 117.49568 * 145.03574 * 8 6 4 39 39 H 1.09003 * 117.50724 * 0.02562 * 8 6 4 40 40 H 1.09001 * 109.83122 * 8.43368 * 14 13 11 41 41 H 1.08999 * 109.83266 * 247.48979 * 14 13 11 42 42 H 1.08997 * 109.63932 * 298.39060 * 15 14 13 43 43 H 1.08999 * 109.64043 * 177.75766 * 15 14 13 44 44 H 1.09005 * 109.20945 * 175.88364 * 16 15 14 45 45 H 1.09006 * 109.17626 * 56.54163 * 16 15 14 46 46 H 1.09002 * 110.81046 * 274.81946 * 21 19 13 47 47 H 1.09000 * 110.81210 * 38.14972 * 21 19 13 48 48 H 1.09000 * 109.88289 * 218.91922 * 22 21 19 49 49 H 1.08991 * 109.88817 * 97.73165 * 22 21 19 50 50 H 0.97003 * 120.00009 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1673 0.0011 7 1 4.1164 -0.6124 -0.8106 8 6 4.3529 -2.4315 0.4961 9 6 4.3518 -1.1677 1.3586 10 1 5.2867 -0.6132 1.4398 11 6 3.4869 -1.1681 2.5926 12 8 2.2816 -1.0813 2.4885 13 7 4.0527 -1.2650 3.8120 14 6 5.5124 -1.3692 3.9273 15 6 5.9780 -0.2909 4.9150 16 6 5.2688 -0.5187 6.2485 17 6 3.7570 -0.3369 6.0979 18 1 3.4978 0.7073 5.9232 19 6 3.2109 -1.2651 4.9942 20 1 2.1956 -0.9710 4.7283 21 6 3.2151 -2.6410 5.6953 22 6 2.8187 -2.2777 7.1444 23 7 3.1300 -0.8528 7.3377 24 6 2.8869 -0.1274 8.4735 25 1 3.2528 0.8854 8.5560 26 6 2.1700 -0.6938 9.5185 27 7 1.5950 -1.8673 9.3623 28 14 2.0213 0.2099 11.1467 29 1 0.7561 0.9870 11.1678 30 1 2.0170 -0.7731 12.2598 31 1 3.1726 1.1340 11.3069 32 1 -0.3633 0.0001 1.0277 33 1 -0.3632 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5137 35 1 2.3792 1.5833 -1.0277 36 1 1.6085 2.0284 0.5137 37 1 3.1500 1.1383 0.5139 38 1 5.2882 -2.7081 0.0097 39 1 3.7279 -3.2633 0.8210 40 1 5.9731 -1.2025 2.9536 41 1 5.7844 -2.3560 4.3018 42 1 5.7224 0.6955 4.5279 43 1 7.0563 -0.3644 5.0563 44 1 5.6447 0.1954 6.9813 45 1 5.4755 -1.5311 6.5956 46 1 2.4771 -3.3062 5.2471 47 1 4.2082 -3.0891 5.6630 48 1 3.3922 -2.8812 7.8480 49 1 1.7520 -2.4473 7.2906 50 1 1.0937 -2.2629 10.0925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049722342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:13 Heat of formation + Delta-G solvation = -21.585297 kcal Electronic energy + Delta-G solvation = -31067.369537 eV Core-core repulsion = 27095.812889 eV Total energy + Delta-G solvation = -3971.556648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99259 -40.86616 -39.36780 -36.97967 -36.76518 -36.37967 -34.16071 -33.69829 -30.97286 -29.89017 -29.26808 -27.52544 -26.89549 -25.96802 -24.86219 -23.97586 -23.24220 -22.03296 -21.20818 -20.08201 -19.37229 -18.87149 -18.71450 -17.65837 -17.13736 -16.83235 -16.74028 -16.36943 -16.25391 -15.95060 -15.32622 -15.20484 -15.02023 -14.96141 -14.33998 -14.23555 -13.96526 -13.88445 -13.77155 -13.51356 -13.45698 -13.39131 -13.10141 -13.01332 -12.87307 -12.84422 -12.60267 -12.34282 -12.29883 -12.08686 -11.97889 -11.68676 -11.59948 -11.55733 -11.43506 -11.21075 -10.89715 -10.76680 -10.63113 -9.59054 -9.54396 -8.90821 -7.83768 -5.24786 1.40934 1.43807 1.45459 1.54817 1.69191 1.91246 2.22649 2.48327 2.86105 3.30424 3.37941 3.53428 3.64248 3.74361 3.78707 3.87852 3.92991 4.06134 4.11491 4.14729 4.28183 4.34135 4.36827 4.41689 4.47223 4.54495 4.62728 4.65473 4.74195 4.79844 4.81832 4.83908 4.87136 4.89606 4.92635 4.97743 5.09819 5.10670 5.21979 5.33980 5.38805 5.53293 5.59994 5.61340 5.65482 5.71594 6.17221 6.46613 6.50498 7.04691 7.19470 7.33280 7.72544 8.38563 9.22968 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003300 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.675714 B = 8482.014088 C = 9151.980810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.617 5.617 3 C 0.080 3.920 4 C 0.546 3.454 5 O -0.599 6.599 6 C -0.162 4.162 7 H 0.180 0.820 8 C -0.111 4.111 9 C -0.157 4.157 10 H 0.187 0.813 11 C 0.519 3.481 12 O -0.574 6.574 13 N -0.586 5.586 14 C 0.102 3.898 15 C -0.121 4.121 16 C -0.120 4.120 17 C 0.153 3.847 18 H 0.048 0.952 19 C 0.151 3.849 20 H 0.058 0.942 21 C -0.132 4.132 22 C 0.183 3.817 23 N -0.617 5.617 24 C -0.237 4.237 25 H 0.083 0.917 26 C -0.067 4.067 27 N -0.952 5.952 28 Si 0.978 3.022 29 H -0.289 1.289 30 H -0.294 1.294 31 H -0.264 1.264 32 H 0.028 0.972 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.164 0.836 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.000 1.000 49 H 0.024 0.976 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.113 6.056 -22.951 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.349 5.349 3 C -0.062 4.062 4 C 0.336 3.664 5 O -0.480 6.480 6 C -0.183 4.183 7 H 0.197 0.803 8 C -0.149 4.149 9 C -0.178 4.178 10 H 0.204 0.796 11 C 0.308 3.692 12 O -0.453 6.453 13 N -0.316 5.316 14 C -0.019 4.019 15 C -0.160 4.160 16 C -0.160 4.160 17 C 0.046 3.954 18 H 0.066 0.934 19 C 0.045 3.955 20 H 0.076 0.924 21 C -0.171 4.171 22 C 0.058 3.942 23 N -0.342 5.342 24 C -0.366 4.366 25 H 0.101 0.899 26 C -0.260 4.260 27 N -0.600 5.600 28 Si 0.806 3.194 29 H -0.217 1.217 30 H -0.221 1.221 31 H -0.189 1.189 32 H 0.047 0.953 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.181 0.819 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.103 0.897 48 H 0.018 0.982 49 H 0.042 0.958 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.054 5.573 -22.769 26.831 hybrid contribution -1.336 0.048 1.880 2.307 sum 11.719 5.621 -20.888 24.602 Atomic orbital electron populations 1.21520 0.79906 1.03107 1.00621 1.47597 1.07011 1.07182 1.73071 1.21939 0.97375 0.83744 1.03108 1.20058 0.89941 0.82798 0.73556 1.90621 1.71328 1.33312 1.52753 1.22424 0.90279 1.06304 0.99249 0.80265 1.23161 1.03249 0.89709 0.98765 1.22506 1.01913 1.06779 0.86608 0.79589 1.20593 0.88087 0.75397 0.85089 1.90750 1.17051 1.51193 1.86305 1.47534 1.08523 1.71481 1.04108 1.22267 0.77011 0.99912 1.02713 1.21903 1.01288 0.99205 0.93592 1.21910 0.94661 1.01148 0.98283 1.21564 0.93522 0.95123 0.85203 0.93407 1.21139 0.93939 0.95528 0.84878 0.92397 1.22857 1.01562 0.96733 0.95953 1.20936 0.97745 0.84581 0.90964 1.44985 1.71189 1.06630 1.11371 1.19416 1.27913 0.97082 0.92191 0.89894 1.25682 0.99624 0.98336 1.02312 1.70188 1.38802 1.19087 1.31965 0.85072 0.77965 0.77305 0.79057 1.21650 1.22096 1.18896 0.95282 0.88135 0.92626 0.89785 0.91154 0.90426 0.81881 0.91051 0.84928 0.90746 0.90952 0.87598 0.93253 0.93226 0.92695 0.89749 0.98178 0.95751 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.31 10.44 127.77 1.33 3.64 16 2 N -0.62 -15.35 3.00 -871.88 -2.61 -17.96 16 3 C 0.08 1.20 10.26 127.77 1.31 2.51 16 4 C 0.55 15.77 4.70 87.66 0.41 16.18 16 5 O -0.60 -23.65 15.96 5.20 0.08 -23.57 16 6 C -0.16 -2.73 4.41 -11.51 -0.05 -2.78 16 7 H 0.18 1.31 8.13 -2.38 -0.02 1.29 16 8 C -0.11 -1.70 9.75 30.62 0.30 -1.40 16 9 C -0.16 -2.45 4.63 -11.54 -0.05 -2.51 16 10 H 0.19 0.97 6.71 -2.39 -0.02 0.96 16 11 C 0.52 14.83 7.41 87.66 0.65 15.48 16 12 O -0.57 -22.67 13.17 5.19 0.07 -22.60 16 13 N -0.59 -16.41 2.73 -794.39 -2.17 -18.59 16 14 C 0.10 1.79 6.07 86.48 0.52 2.31 16 15 C -0.12 -2.34 6.11 30.66 0.19 -2.15 16 16 C -0.12 -3.85 5.10 30.51 0.16 -3.69 16 17 C 0.15 6.25 3.59 45.08 0.16 6.41 16 18 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 19 C 0.15 5.88 3.10 46.14 0.14 6.02 16 20 H 0.06 2.74 6.96 -2.39 -0.02 2.73 16 21 C -0.13 -5.40 6.08 31.61 0.19 -5.21 16 22 C 0.18 9.58 5.31 86.79 0.46 10.04 16 23 N -0.62 -32.28 2.91 -667.06 -1.94 -34.22 16 24 C -0.24 -13.47 10.27 84.03 0.86 -12.60 16 25 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 26 C -0.07 -3.88 5.45 84.86 0.46 -3.41 16 27 N -0.95 -59.25 10.49 21.65 0.23 -59.02 16 28 Si 0.98 46.62 29.56 68.60 2.03 48.65 16 29 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 30 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 31 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 34 H 0.05 1.56 7.42 -2.39 -0.02 1.54 16 35 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 37 H 0.08 1.04 6.61 -2.38 -0.02 1.02 16 38 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.73 7.84 -2.39 -0.02 1.71 16 40 H 0.13 1.06 5.49 -2.39 -0.01 1.05 16 41 H 0.07 1.32 7.53 -2.39 -0.02 1.30 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.05 1.72 7.13 -2.38 -0.02 1.71 16 46 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.08 3.00 6.81 -2.39 -0.02 2.98 16 48 H 0.00 0.00 8.07 -2.39 -0.02 -0.02 16 49 H 0.02 1.48 6.75 -2.39 -0.02 1.46 16 50 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -89.49 384.68 3.66 -85.83 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.93 Total: 12.64 kcal Atomic # 6 Polarization: 21.79 SS G_CDS: 7.05 Total: 28.84 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -6.50 Total: -129.79 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: 0.15 Total: -46.17 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -89.49 3.66 -85.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049722342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.248 kcal (2) G-P(sol) polarization free energy of solvation -89.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds