Wall clock time and date at job start Tue Mar 31 2020 18:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00118 * 2 1 4 4 C 1.34782 * 120.00098 * 179.97438 * 2 1 3 5 5 O 1.21281 * 119.99788 * 0.02562 * 4 2 1 6 6 C 1.50696 * 119.99746 * 179.97438 * 4 2 1 7 7 H 1.09007 * 115.56567 * 39.46179 * 6 4 2 8 8 C 1.53070 * 117.51746 * 253.75378 * 6 4 2 9 9 C 1.52997 * 59.98520 * 252.52355 * 8 6 4 10 10 H 1.08998 * 117.50374 * 252.49620 * 9 8 6 11 11 C 1.50707 * 117.50110 * 107.49688 * 9 8 6 12 12 O 1.21285 * 119.99640 * 5.23292 * 11 9 8 13 13 N 1.34768 * 120.00135 * 185.23234 * 11 9 8 14 14 C 1.44505 * 116.63408 * 355.25105 * 13 11 9 15 15 C 1.51636 * 112.65501 * 154.60116 * 14 13 11 16 16 C 1.51318 * 111.98245 * 42.75769 * 15 14 13 17 17 C 1.50706 * 113.53944 * 304.59951 * 16 15 14 18 18 H 1.08997 * 108.92038 * 169.34431 * 17 16 15 19 19 C 1.54180 * 110.51384 * 289.40626 * 17 16 15 20 20 N 1.46924 * 106.26697 * 151.09484 * 19 17 16 21 21 C 1.36935 * 125.37969 * 162.12668 * 20 19 17 22 22 H 1.08008 * 119.99807 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00384 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99790 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00070 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47489 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46962 * 120.00546 * 25 23 21 28 28 H 1.48493 * 109.47516 * 240.00396 * 25 23 21 29 29 C 1.46816 * 109.24876 * 342.15060 * 20 19 17 30 30 C 1.44106 * 116.63081 * 175.23357 * 13 11 9 31 31 H 1.09000 * 108.46631 * 74.36742 * 30 13 11 32 32 H 1.08996 * 109.47193 * 269.99854 * 1 2 3 33 33 H 1.08997 * 109.46726 * 30.00182 * 1 2 3 34 34 H 1.08998 * 109.46725 * 150.00128 * 1 2 3 35 35 H 1.08999 * 109.47442 * 239.99613 * 3 2 1 36 36 H 1.08999 * 109.46845 * 359.97438 * 3 2 1 37 37 H 1.08999 * 109.47106 * 119.99379 * 3 2 1 38 38 H 1.09001 * 117.50157 * 145.04094 * 8 6 4 39 39 H 1.09004 * 117.50963 * 0.02562 * 8 6 4 40 40 H 1.08995 * 108.84918 * 275.42201 * 14 13 11 41 41 H 1.09003 * 108.84142 * 33.78465 * 14 13 11 42 42 H 1.08995 * 108.97648 * 163.40555 * 15 14 13 43 43 H 1.09010 * 108.97426 * 282.19773 * 15 14 13 44 44 H 1.08998 * 108.66091 * 183.56171 * 16 15 14 45 45 H 1.09000 * 108.68788 * 65.65620 * 16 15 14 46 46 H 1.09002 * 110.09819 * 270.30068 * 19 17 16 47 47 H 1.09001 * 110.09465 * 31.83611 * 19 17 16 48 48 H 0.97000 * 119.99805 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.84519 * 120.40010 * 29 20 19 50 50 H 1.09005 * 109.84154 * 241.31231 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1671 -0.0001 7 1 4.1165 -0.4075 0.6242 8 6 4.3526 -1.5478 -1.3034 9 6 4.3524 -2.5188 -0.1211 10 1 5.2874 -2.6487 0.4238 11 6 3.4879 -3.7484 -0.2307 12 8 2.9010 -3.9869 -1.2649 13 7 3.3670 -4.5831 0.8206 14 6 4.1791 -4.2878 1.9788 15 6 3.5839 -4.8312 3.2633 16 6 3.0406 -6.2325 3.0874 17 6 2.0297 -6.3510 1.9760 18 1 1.8320 -7.4065 1.7891 19 6 0.7140 -5.6477 2.3651 20 7 0.1032 -5.1931 1.1086 21 6 -1.2093 -4.8367 0.9485 22 1 -1.8864 -4.8780 1.7889 23 6 -1.6693 -4.4215 -0.2937 24 7 -0.8440 -4.3708 -1.3177 25 14 -3.4598 -3.9361 -0.5121 26 1 -4.1733 -4.0804 0.7821 27 1 -3.5381 -2.5241 -0.9653 28 1 -4.0913 -4.8173 -1.5269 29 6 1.1219 -5.1816 0.0515 30 6 2.4411 -5.6774 0.6734 31 1 2.8876 -6.4211 0.0134 32 1 -0.3633 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5138 35 1 2.8243 1.3265 -0.8899 36 1 1.4892 2.0972 -0.0005 37 1 2.8241 1.3265 0.8900 38 1 5.2878 -1.0385 -1.5362 39 1 3.7275 -1.7978 -2.1606 40 1 5.1675 -4.7245 1.8365 41 1 4.2837 -3.2066 2.0690 42 1 4.3549 -4.8440 4.0336 43 1 2.7739 -4.1758 3.5837 44 1 2.5714 -6.5443 4.0205 45 1 3.8717 -6.9054 2.8763 46 1 0.0505 -6.3484 2.8721 47 1 0.9221 -4.7950 3.0114 48 1 -1.1655 -4.0810 -2.1858 49 1 0.8221 -5.8464 -0.7587 50 1 1.2486 -4.1682 -0.3294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050139289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:27 Heat of formation + Delta-G solvation = 21.070556 kcal Electronic energy + Delta-G solvation = -32729.204382 eV Core-core repulsion = 28759.497430 eV Total energy + Delta-G solvation = -3969.706952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.62945 -39.31673 -37.55730 -35.59199 -35.14072 -34.90225 -32.89445 -31.79163 -29.41992 -28.12700 -27.13631 -26.28473 -25.40266 -24.35109 -23.33733 -22.96024 -21.76711 -20.25497 -19.48181 -18.32812 -17.61555 -17.48063 -16.45394 -15.95765 -15.66269 -15.33600 -15.09304 -14.95131 -14.63971 -14.27348 -13.88824 -13.76589 -13.58092 -13.49650 -12.76425 -12.65299 -12.60909 -12.46984 -12.33595 -12.23577 -11.92864 -11.75402 -11.61884 -11.47922 -11.12584 -10.82497 -10.76419 -10.63104 -10.43546 -10.39742 -10.31813 -10.09567 -9.89716 -9.76092 -9.62293 -9.37500 -9.16058 -8.72569 -8.25474 -8.14938 -7.62957 -6.35224 -5.29486 -2.63911 2.84024 3.21280 3.44312 3.54280 3.59655 3.62182 3.66453 4.22303 4.66535 4.75357 4.83666 4.90174 4.99851 5.08354 5.09335 5.16337 5.22295 5.31809 5.39424 5.43916 5.59344 5.59714 5.65202 5.72958 5.74104 5.76530 5.87367 5.95679 5.99185 6.05507 6.09184 6.18695 6.21141 6.25993 6.39599 6.44607 6.45229 6.69680 6.81674 6.82620 6.97983 7.04883 7.45784 7.73700 7.88706 8.09125 8.21889 8.41782 8.61636 9.08677 9.25325 9.59280 10.22279 10.88146 11.77049 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.007509 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.022533 B = 3727.993021 C = 5857.795420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.626 5.626 3 C 0.088 3.912 4 C 0.508 3.492 5 O -0.445 6.445 6 C -0.163 4.163 7 H 0.123 0.877 8 C -0.125 4.125 9 C -0.162 4.162 10 H 0.124 0.876 11 C 0.542 3.458 12 O -0.496 6.496 13 N -0.587 5.587 14 C 0.122 3.878 15 C -0.126 4.126 16 C -0.100 4.100 17 C -0.103 4.103 18 H 0.075 0.925 19 C 0.146 3.854 20 N -0.600 5.600 21 C -0.228 4.228 22 H 0.069 0.931 23 C 0.000 4.000 24 N -0.891 5.891 25 Si 0.896 3.104 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.294 1.294 29 C 0.153 3.847 30 C 0.135 3.865 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.025 0.975 47 H 0.009 0.991 48 H 0.245 0.755 49 H 0.037 0.963 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.100 9.158 6.412 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.364 5.364 3 C -0.056 4.056 4 C 0.293 3.707 5 O -0.314 6.314 6 C -0.184 4.184 7 H 0.141 0.859 8 C -0.162 4.162 9 C -0.184 4.184 10 H 0.142 0.858 11 C 0.329 3.671 12 O -0.370 6.370 13 N -0.321 5.321 14 C -0.002 4.002 15 C -0.164 4.164 16 C -0.138 4.138 17 C -0.123 4.123 18 H 0.093 0.907 19 C 0.019 3.981 20 N -0.326 5.326 21 C -0.356 4.356 22 H 0.087 0.913 23 C -0.198 4.198 24 N -0.538 5.538 25 Si 0.728 3.272 26 H -0.209 1.209 27 H -0.222 1.222 28 H -0.222 1.222 29 C 0.029 3.971 30 C 0.031 3.969 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.027 0.973 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.270 8.429 5.699 17.526 hybrid contribution -0.869 0.521 0.216 1.036 sum 13.401 8.950 5.914 17.166 Atomic orbital electron populations 1.21613 0.78739 1.03255 1.01576 1.47527 1.06865 1.05659 1.76301 1.21649 0.97036 0.85925 1.01008 1.19779 0.88128 0.84244 0.78504 1.91055 1.68160 1.28774 1.43454 1.22303 0.93417 0.98616 1.04107 0.85890 1.22990 1.01681 0.99600 0.91960 1.22402 1.00905 0.90355 1.04690 0.85816 1.19111 0.81119 0.82785 0.84132 1.90759 1.43761 1.73197 1.29291 1.46496 1.42193 1.29088 1.14298 1.20670 0.93230 0.99853 0.86465 1.21097 1.00873 0.97817 0.96624 1.20480 0.98235 0.96364 0.98757 1.21326 0.96605 1.00023 0.94320 0.90653 1.21295 0.91086 0.94859 0.90881 1.44259 1.06608 1.77651 1.04103 1.18871 0.83941 1.38108 0.94716 0.91348 1.24732 0.96775 1.02077 0.96175 1.70063 1.31713 1.52148 0.99846 0.86287 0.85971 0.77752 0.77221 1.20946 1.22167 1.22192 1.22148 0.80763 1.05357 0.88838 1.21142 0.92814 0.87142 0.95792 0.93334 0.93290 0.92287 0.89369 0.92549 0.91064 0.92842 0.87523 0.86914 0.93520 0.91494 0.91248 0.91346 0.91870 0.92731 0.95673 0.97323 0.94444 0.94442 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 10.41 59.85 0.62 2.13 16 2 N -0.63 -9.71 3.27 -189.52 -0.62 -10.33 16 3 C 0.09 0.87 9.66 59.85 0.58 1.44 16 4 C 0.51 9.35 7.43 -10.99 -0.08 9.27 16 5 O -0.45 -10.85 10.85 -15.16 -0.16 -11.01 16 6 C -0.16 -2.20 5.18 -91.74 -0.48 -2.68 16 7 H 0.12 1.20 7.33 -51.93 -0.38 0.82 16 8 C -0.12 -1.60 9.75 -26.70 -0.26 -1.86 16 9 C -0.16 -2.34 4.50 -91.77 -0.41 -2.75 16 10 H 0.12 1.33 7.20 -51.93 -0.37 0.96 16 11 C 0.54 10.90 4.64 -10.99 -0.05 10.85 16 12 O -0.50 -12.41 12.84 -15.16 -0.19 -12.60 16 13 N -0.59 -11.23 3.09 -170.01 -0.53 -11.75 16 14 C 0.12 1.73 5.54 -5.80 -0.03 1.70 16 15 C -0.13 -1.71 5.83 -28.27 -0.16 -1.87 16 16 C -0.10 -1.47 5.17 -28.73 -0.15 -1.62 16 17 C -0.10 -2.00 3.04 -91.51 -0.28 -2.28 16 18 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 19 C 0.15 3.36 6.66 -3.19 -0.02 3.34 16 20 N -0.60 -16.95 3.39 -171.27 -0.58 -17.53 16 21 C -0.23 -6.91 10.25 -15.06 -0.15 -7.07 16 22 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 23 C 0.00 0.00 5.48 -17.43 -0.10 -0.10 16 24 N -0.89 -28.53 10.26 55.49 0.57 -27.96 16 25 Si 0.90 23.61 29.55 -169.99 -5.02 18.59 16 26 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 29 C 0.15 4.25 4.13 -3.33 -0.01 4.23 16 30 C 0.13 2.98 3.14 -69.02 -0.22 2.76 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.09 1.91 7.42 -51.93 -0.39 1.53 16 35 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.07 0.58 7.79 -51.93 -0.40 0.18 16 37 H 0.05 0.44 7.61 -51.93 -0.40 0.05 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.11 1.82 7.68 -51.93 -0.40 1.42 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.06 6.99 -51.92 -0.36 0.69 16 44 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.01 0.22 6.69 -51.93 -0.35 -0.13 16 48 H 0.24 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.04 1.20 7.37 -51.93 -0.38 0.82 16 50 H 0.13 3.74 2.17 -51.93 -0.11 3.63 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -39.07 375.30 -10.14 -49.21 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.05 Total: 2.21 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -1.21 Total: 15.51 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -1.16 Total: -67.57 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.36 Total: -23.61 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.07 -10.14 -49.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050139289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.284 kcal (2) G-P(sol) polarization free energy of solvation -39.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds