Wall clock time and date at job start Tue Mar 31 2020 18:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00118 * 2 1 4 4 C 1.34782 * 120.00098 * 179.97438 * 2 1 3 5 5 O 1.21281 * 119.99788 * 0.02562 * 4 2 1 6 6 C 1.50696 * 119.99746 * 179.97438 * 4 2 1 7 7 H 1.09007 * 115.56567 * 39.46179 * 6 4 2 8 8 C 1.53070 * 117.51746 * 253.75378 * 6 4 2 9 9 C 1.52997 * 59.98520 * 252.52355 * 8 6 4 10 10 H 1.08998 * 117.50374 * 252.49620 * 9 8 6 11 11 C 1.50707 * 117.50110 * 107.49688 * 9 8 6 12 12 O 1.21285 * 119.99640 * 5.23292 * 11 9 8 13 13 N 1.34768 * 120.00135 * 185.23234 * 11 9 8 14 14 C 1.44505 * 116.63408 * 355.25105 * 13 11 9 15 15 C 1.51636 * 112.65501 * 154.60116 * 14 13 11 16 16 C 1.51318 * 111.98245 * 42.75769 * 15 14 13 17 17 C 1.50706 * 113.53944 * 304.59951 * 16 15 14 18 18 H 1.08997 * 108.92038 * 169.34431 * 17 16 15 19 19 C 1.54180 * 110.51384 * 289.40626 * 17 16 15 20 20 N 1.46924 * 106.26697 * 151.09484 * 19 17 16 21 21 C 1.36935 * 125.37969 * 162.12668 * 20 19 17 22 22 H 1.08008 * 119.99807 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00384 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99790 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00070 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47489 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46962 * 120.00546 * 25 23 21 28 28 H 1.48493 * 109.47516 * 240.00396 * 25 23 21 29 29 C 1.46816 * 109.24876 * 342.15060 * 20 19 17 30 30 C 1.44106 * 116.63081 * 175.23357 * 13 11 9 31 31 H 1.09000 * 108.46631 * 74.36742 * 30 13 11 32 32 H 1.08996 * 109.47193 * 269.99854 * 1 2 3 33 33 H 1.08997 * 109.46726 * 30.00182 * 1 2 3 34 34 H 1.08998 * 109.46725 * 150.00128 * 1 2 3 35 35 H 1.08999 * 109.47442 * 239.99613 * 3 2 1 36 36 H 1.08999 * 109.46845 * 359.97438 * 3 2 1 37 37 H 1.08999 * 109.47106 * 119.99379 * 3 2 1 38 38 H 1.09001 * 117.50157 * 145.04094 * 8 6 4 39 39 H 1.09004 * 117.50963 * 0.02562 * 8 6 4 40 40 H 1.08995 * 108.84918 * 275.42201 * 14 13 11 41 41 H 1.09003 * 108.84142 * 33.78465 * 14 13 11 42 42 H 1.08995 * 108.97648 * 163.40555 * 15 14 13 43 43 H 1.09010 * 108.97426 * 282.19773 * 15 14 13 44 44 H 1.08998 * 108.66091 * 183.56171 * 16 15 14 45 45 H 1.09000 * 108.68788 * 65.65620 * 16 15 14 46 46 H 1.09002 * 110.09819 * 270.30068 * 19 17 16 47 47 H 1.09001 * 110.09465 * 31.83611 * 19 17 16 48 48 H 0.97000 * 119.99805 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.84519 * 120.40010 * 29 20 19 50 50 H 1.09005 * 109.84154 * 241.31231 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1671 -0.0001 7 1 4.1165 -0.4075 0.6242 8 6 4.3526 -1.5478 -1.3034 9 6 4.3524 -2.5188 -0.1211 10 1 5.2874 -2.6487 0.4238 11 6 3.4879 -3.7484 -0.2307 12 8 2.9010 -3.9869 -1.2649 13 7 3.3670 -4.5831 0.8206 14 6 4.1791 -4.2878 1.9788 15 6 3.5839 -4.8312 3.2633 16 6 3.0406 -6.2325 3.0874 17 6 2.0297 -6.3510 1.9760 18 1 1.8320 -7.4065 1.7891 19 6 0.7140 -5.6477 2.3651 20 7 0.1032 -5.1931 1.1086 21 6 -1.2093 -4.8367 0.9485 22 1 -1.8864 -4.8780 1.7889 23 6 -1.6693 -4.4215 -0.2937 24 7 -0.8440 -4.3708 -1.3177 25 14 -3.4598 -3.9361 -0.5121 26 1 -4.1733 -4.0804 0.7821 27 1 -3.5381 -2.5241 -0.9653 28 1 -4.0913 -4.8173 -1.5269 29 6 1.1219 -5.1816 0.0515 30 6 2.4411 -5.6774 0.6734 31 1 2.8876 -6.4211 0.0134 32 1 -0.3633 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5138 35 1 2.8243 1.3265 -0.8899 36 1 1.4892 2.0972 -0.0005 37 1 2.8241 1.3265 0.8900 38 1 5.2878 -1.0385 -1.5362 39 1 3.7275 -1.7978 -2.1606 40 1 5.1675 -4.7245 1.8365 41 1 4.2837 -3.2066 2.0690 42 1 4.3549 -4.8440 4.0336 43 1 2.7739 -4.1758 3.5837 44 1 2.5714 -6.5443 4.0205 45 1 3.8717 -6.9054 2.8763 46 1 0.0505 -6.3484 2.8721 47 1 0.9221 -4.7950 3.0114 48 1 -1.1655 -4.0810 -2.1858 49 1 0.8221 -5.8464 -0.7587 50 1 1.2486 -4.1682 -0.3294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050139289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:26 Heat of formation + Delta-G solvation = -7.573336 kcal Electronic energy + Delta-G solvation = -32730.446474 eV Core-core repulsion = 28759.497430 eV Total energy + Delta-G solvation = -3970.949044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.05118 -40.71351 -39.06914 -36.92351 -36.77030 -36.27613 -34.54224 -33.64599 -31.38215 -29.33901 -28.81722 -27.40531 -27.25880 -25.91717 -24.80481 -24.08493 -23.26911 -22.16124 -20.82184 -19.68382 -19.21815 -18.73634 -18.43682 -17.37216 -17.02193 -16.86377 -16.58271 -16.45374 -16.01759 -15.87622 -15.67916 -15.10144 -15.03605 -14.88019 -14.25538 -13.99668 -13.94539 -13.86176 -13.59007 -13.50842 -13.45196 -13.36089 -12.98228 -12.91365 -12.87404 -12.81694 -12.58809 -12.31736 -12.05505 -11.79404 -11.68399 -11.53340 -11.45347 -11.43063 -11.33489 -11.28093 -10.67161 -10.57695 -10.15518 -9.49309 -9.20314 -8.63893 -7.64641 -5.02843 1.35464 1.39190 1.48909 1.57983 1.92399 2.12809 2.38500 2.51971 3.04862 3.45339 3.53643 3.68161 3.75254 3.80268 3.84242 3.93307 3.97510 4.09669 4.15051 4.17646 4.28101 4.36104 4.40899 4.48703 4.58461 4.64115 4.72814 4.77272 4.80647 4.84490 4.85574 4.87873 4.93333 4.95724 4.97323 5.01816 5.15400 5.20156 5.20881 5.40814 5.48492 5.49939 5.63011 5.73930 6.02601 6.25132 6.54161 6.63842 6.77645 7.21963 7.62648 7.67686 7.97906 8.59775 9.38833 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.007509 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.022533 B = 3727.993021 C = 5857.795420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.626 5.626 3 C 0.080 3.920 4 C 0.486 3.514 5 O -0.520 6.520 6 C -0.147 4.147 7 H 0.179 0.821 8 C -0.111 4.111 9 C -0.167 4.167 10 H 0.177 0.823 11 C 0.528 3.472 12 O -0.566 6.566 13 N -0.589 5.589 14 C 0.108 3.892 15 C -0.123 4.123 16 C -0.097 4.097 17 C -0.091 4.091 18 H 0.074 0.926 19 C 0.142 3.858 20 N -0.621 5.621 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.059 4.059 24 N -0.919 5.919 25 Si 0.967 3.033 26 H -0.265 1.265 27 H -0.293 1.293 28 H -0.295 1.295 29 C 0.155 3.845 30 C 0.145 3.855 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.163 0.837 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.028 0.972 47 H 0.011 0.989 48 H 0.232 0.768 49 H -0.033 1.033 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.770 11.749 9.524 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.362 5.362 3 C -0.061 4.061 4 C 0.274 3.726 5 O -0.394 6.394 6 C -0.168 4.168 7 H 0.196 0.804 8 C -0.149 4.149 9 C -0.188 4.188 10 H 0.194 0.806 11 C 0.317 3.683 12 O -0.444 6.444 13 N -0.322 5.322 14 C -0.014 4.014 15 C -0.161 4.161 16 C -0.135 4.135 17 C -0.110 4.110 18 H 0.093 0.907 19 C 0.016 3.984 20 N -0.348 5.348 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.253 4.253 24 N -0.566 5.566 25 Si 0.796 3.204 26 H -0.190 1.190 27 H -0.220 1.220 28 H -0.222 1.222 29 C 0.030 3.970 30 C 0.039 3.961 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.181 0.819 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.046 0.954 47 H 0.029 0.971 48 H 0.041 0.959 49 H -0.015 1.015 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.993 11.072 8.890 22.921 hybrid contribution -2.069 -0.254 -0.775 2.224 sum 15.924 10.818 8.116 20.891 Atomic orbital electron populations 1.21430 0.80478 1.01794 1.00956 1.47735 1.06326 1.07313 1.74837 1.22020 0.97600 0.83413 1.03110 1.20843 0.90577 0.83918 0.77273 1.91041 1.70066 1.31474 1.46817 1.22410 0.89865 0.99154 1.05407 0.80354 1.23082 1.02862 0.98945 0.89982 1.22495 1.01631 0.87784 1.06872 0.80590 1.20207 0.80777 0.84125 0.83187 1.90730 1.46810 1.74844 1.32019 1.46589 1.41619 1.27959 1.16049 1.21145 0.93808 1.01691 0.84717 1.21153 1.01443 0.96005 0.97466 1.20505 0.97641 0.98264 0.97056 1.21307 0.96077 0.98925 0.94735 0.90737 1.21487 0.92888 0.95040 0.88981 1.44541 1.06400 1.77697 1.06138 1.19243 0.85419 1.37945 0.94880 0.91108 1.25607 1.01359 1.02477 0.95870 1.70417 1.33582 1.52957 0.99679 0.85186 0.80613 0.77026 0.77619 1.18965 1.21979 1.22217 1.21923 0.83497 1.03792 0.87751 1.20636 0.90747 0.88011 0.96676 0.94904 0.93526 0.88550 0.95788 0.90947 0.89194 0.89990 0.81913 0.91581 0.89716 0.89475 0.86315 0.93864 0.90015 0.89995 0.95384 0.97115 0.95863 1.01536 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.37 10.41 127.77 1.33 4.70 16 2 N -0.63 -19.06 3.27 -871.90 -2.85 -21.91 16 3 C 0.08 1.28 9.66 127.77 1.23 2.51 16 4 C 0.49 18.06 7.43 87.65 0.65 18.71 16 5 O -0.52 -27.09 10.85 16.78 0.18 -26.90 16 6 C -0.15 -3.50 5.18 -11.52 -0.06 -3.56 16 7 H 0.18 2.26 7.33 -2.38 -0.02 2.24 16 8 C -0.11 -2.57 9.75 30.62 0.30 -2.27 16 9 C -0.17 -4.33 4.50 -11.54 -0.05 -4.39 16 10 H 0.18 2.68 7.20 -2.39 -0.02 2.66 16 11 C 0.53 21.68 4.64 87.66 0.41 22.08 16 12 O -0.57 -30.75 12.84 16.76 0.22 -30.53 16 13 N -0.59 -22.49 3.09 -810.18 -2.50 -24.99 16 14 C 0.11 2.65 5.54 86.30 0.48 3.13 16 15 C -0.12 -2.82 5.83 29.60 0.17 -2.64 16 16 C -0.10 -2.53 5.17 29.30 0.15 -2.38 16 17 C -0.09 -3.55 3.04 -11.37 -0.03 -3.58 16 18 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 19 C 0.14 6.77 6.66 86.70 0.58 7.35 16 20 N -0.62 -37.63 3.39 -695.79 -2.36 -39.98 16 21 C -0.25 -15.88 10.25 84.03 0.86 -15.02 16 22 H 0.07 4.40 7.83 -2.91 -0.02 4.38 16 23 C -0.06 -3.83 5.48 84.86 0.47 -3.36 16 24 N -0.92 -64.38 10.26 21.65 0.22 -64.15 16 25 Si 0.97 51.68 29.55 68.60 2.03 53.71 16 26 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.29 -15.42 7.11 99.48 0.71 -14.72 16 28 H -0.29 -15.67 7.11 99.48 0.71 -14.97 16 29 C 0.15 9.41 4.13 86.67 0.36 9.77 16 30 C 0.14 6.74 3.14 45.56 0.14 6.89 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 2.52 7.92 -2.39 -0.02 2.50 16 34 H 0.02 1.13 7.42 -2.39 -0.02 1.11 16 35 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 36 H 0.09 1.12 7.79 -2.39 -0.02 1.10 16 37 H 0.08 0.90 7.61 -2.39 -0.02 0.88 16 38 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 2.20 7.68 -2.39 -0.02 2.18 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.82 6.30 -2.39 -0.02 1.80 16 42 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.04 1.21 6.99 -2.38 -0.02 1.20 16 44 H 0.08 1.88 8.11 -2.39 -0.02 1.86 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.01 0.53 6.69 -2.39 -0.02 0.52 16 48 H 0.23 16.06 8.31 -92.71 -0.77 15.29 16 49 H -0.03 -2.43 7.37 -2.39 -0.02 -2.45 16 50 H 0.12 7.82 2.17 -2.38 -0.01 7.82 16 Total: -1.00 -103.79 375.30 2.85 -100.94 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.94 Total: 15.90 kcal Atomic # 6 Polarization: 30.95 SS G_CDS: 6.98 Total: 37.93 kcal Atomic # 7 Polarization: -143.55 SS G_CDS: -7.49 Total: -151.05 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: 0.40 Total: -57.43 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.03 Total: 53.71 kcal Total: -103.79 2.85 -100.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050139289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.364 kcal (2) G-P(sol) polarization free energy of solvation -103.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds