Wall clock time and date at job start Tue Mar 31 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99841 * 2 1 4 4 C 1.46898 * 110.99831 * 123.94532 * 2 1 3 5 5 C 1.50696 * 109.47068 * 164.19224 * 4 2 1 6 6 C 1.40362 * 126.64704 * 106.17222 * 5 4 2 7 7 C 1.35135 * 107.11625 * 180.30087 * 6 5 4 8 8 O 1.33925 * 108.76618 * 359.74550 * 7 6 5 9 9 C 1.34912 * 109.38552 * 0.02562 * 8 7 6 10 10 C 1.46661 * 125.98606 * 180.02562 * 9 8 7 11 11 O 1.21695 * 119.99653 * 185.68999 * 10 9 8 12 12 N 1.34769 * 120.00222 * 5.67931 * 10 9 8 13 13 C 1.46505 * 120.00235 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.21063 * 36.93855 * 13 12 10 15 15 C 1.50123 * 110.25163 * 159.02398 * 13 12 10 16 16 C 1.54836 * 110.81739 * 216.65816 * 15 13 12 17 17 C 1.54405 * 110.06935 * 321.07536 * 16 15 13 18 18 N 1.43426 * 116.39203 * 318.64931 * 17 16 15 19 19 C 1.36942 * 120.53689 * 271.73160 * 18 17 16 20 20 H 1.07988 * 120.00071 * 335.30137 * 19 18 17 21 21 C 1.38810 * 119.99575 * 155.02322 * 19 18 17 22 22 N 1.31623 * 120.00586 * 345.58395 * 21 19 18 23 23 Si 1.86808 * 119.99853 * 165.58967 * 21 19 18 24 24 H 1.48497 * 109.47175 * 89.99691 * 23 21 19 25 25 H 1.48495 * 109.46798 * 210.00019 * 23 21 19 26 26 H 1.48505 * 109.46786 * 329.99757 * 23 21 19 27 27 C 1.50174 * 118.92805 * 91.45389 * 18 17 16 28 28 C 1.46236 * 107.53159 * 289.84846 * 27 18 17 29 29 H 1.08998 * 109.47315 * 296.05343 * 1 2 3 30 30 H 1.09003 * 109.47134 * 56.04889 * 1 2 3 31 31 H 1.08995 * 109.47561 * 176.04914 * 1 2 3 32 32 H 1.08999 * 109.46803 * 190.00453 * 3 2 1 33 33 H 1.09003 * 109.46769 * 309.99280 * 3 2 1 34 34 H 1.08995 * 109.47354 * 69.99782 * 3 2 1 35 35 H 1.09009 * 109.46723 * 44.19670 * 4 2 1 36 36 H 1.08995 * 109.47906 * 284.19698 * 4 2 1 37 37 H 1.07997 * 126.44281 * 0.05326 * 6 5 4 38 38 H 1.07998 * 125.61327 * 179.78538 * 7 6 5 39 39 H 0.96996 * 120.00077 * 0.02562 * 12 10 9 40 40 H 1.09003 * 109.20652 * 337.00313 * 15 13 12 41 41 H 1.09001 * 109.20673 * 96.31470 * 15 13 12 42 42 H 1.09008 * 109.35909 * 81.33979 * 16 15 13 43 43 H 1.09002 * 109.36254 * 201.06545 * 16 15 13 44 44 H 1.09007 * 107.88698 * 196.93088 * 17 16 15 45 45 H 1.08994 * 108.10269 * 80.54042 * 17 16 15 46 46 H 0.96993 * 119.99790 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.84157 * 49.34937 * 27 18 17 48 48 H 1.08996 * 109.84435 * 170.26638 * 27 18 17 49 49 H 1.09003 * 108.51954 * 179.64933 * 28 27 18 50 50 H 1.09003 * 108.52095 * 297.16047 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7658 1.1377 5 6 3.4517 -1.0752 0.9042 6 6 4.5484 -0.4756 1.5428 7 6 5.6642 -1.0419 1.0324 8 8 5.3055 -1.9568 0.1226 9 6 3.9599 -1.9945 0.0318 10 6 3.1799 -2.8667 -0.8523 11 8 1.9717 -2.7388 -0.9219 12 7 3.8012 -3.8097 -1.5880 13 6 3.0221 -4.6806 -2.4716 14 1 2.2048 -4.1211 -2.9268 15 6 3.9063 -5.2698 -3.5321 16 6 3.1513 -5.3801 -4.8794 17 6 1.6888 -5.8101 -4.6335 18 7 1.4812 -6.8276 -3.6442 19 6 1.5198 -8.1522 -3.9896 20 1 1.3081 -8.4517 -5.0053 21 6 1.8368 -9.1092 -3.0355 22 7 2.3716 -8.7443 -1.8895 23 14 1.5046 -10.9154 -3.3780 24 1 2.6952 -11.5239 -4.0240 25 1 1.2215 -11.6174 -2.1005 26 1 0.3329 -11.0404 -4.2818 27 6 1.2271 -6.4171 -2.2222 28 6 2.4759 -5.8718 -1.6912 29 1 -0.3634 0.4513 0.9232 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0251 -0.0708 32 1 3.0704 1.3480 -0.1785 33 1 1.5090 1.9473 -0.7874 34 1 1.7975 1.8367 0.9656 35 1 1.4376 -1.6970 1.2380 36 1 1.8904 -0.1793 2.0504 37 1 4.5082 0.2963 2.2971 38 1 6.6781 -0.7973 1.3126 39 1 4.7641 -3.9118 -1.5324 40 1 4.7820 -4.6340 -3.6628 41 1 4.2286 -6.2629 -3.2193 42 1 3.1654 -4.4128 -5.3818 43 1 3.6425 -6.1217 -5.5093 44 1 1.2815 -6.1677 -5.5793 45 1 1.1215 -4.9278 -4.3376 46 1 2.5934 -9.4132 -1.2230 47 1 0.4479 -5.6556 -2.1906 48 1 0.9215 -7.2836 -1.6359 49 1 2.3076 -5.5624 -0.6597 50 1 3.2273 -6.6615 -1.6940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052661548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:52 Heat of formation + Delta-G solvation = 3.031934 kcal Electronic energy + Delta-G solvation = -30537.245612 eV Core-core repulsion = 26566.756447 eV Total energy + Delta-G solvation = -3970.489165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.64662 -40.86353 -39.16090 -38.33203 -36.18371 -34.37217 -34.07430 -32.74040 -32.32450 -30.91479 -28.45029 -28.40529 -27.74306 -25.71115 -24.93481 -23.94243 -23.02919 -22.20617 -21.62485 -21.05438 -20.40056 -18.97591 -18.57391 -17.38180 -17.23631 -17.03197 -16.79090 -16.13009 -16.10087 -15.71665 -15.62593 -15.49494 -15.39933 -15.33576 -14.90934 -14.52933 -14.10285 -13.81327 -13.67158 -13.48939 -13.37827 -13.17576 -13.14362 -13.05158 -12.70272 -12.63764 -12.55200 -12.53813 -12.40673 -12.06632 -11.86883 -11.71020 -11.65411 -11.19458 -11.04176 -11.01120 -10.76106 -10.51341 -9.97013 -9.50585 -9.18474 -8.62039 -7.78135 -5.23739 0.12791 1.44677 1.48906 1.51451 1.59668 1.77986 2.19867 2.38801 2.56107 3.19182 3.35394 3.60411 3.71291 3.84831 3.95841 4.03791 4.13617 4.27086 4.28890 4.35639 4.49414 4.54128 4.55324 4.57111 4.64447 4.70166 4.73091 4.76027 4.88447 4.95558 4.97232 5.00719 5.04757 5.06623 5.08238 5.21754 5.24897 5.33188 5.38926 5.43802 5.54103 5.66639 5.69904 5.72407 5.92804 6.09843 6.11244 6.21363 6.45777 6.62287 7.19726 7.22943 7.92145 8.44917 9.25745 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.003013 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.444026 B = 9292.142737 C = 9679.901800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.553 5.553 3 C 0.030 3.970 4 C 0.127 3.873 5 C -0.093 4.093 6 C -0.227 4.227 7 C 0.008 3.992 8 O -0.173 6.173 9 C -0.086 4.086 10 C 0.592 3.408 11 O -0.531 6.531 12 N -0.708 5.708 13 C 0.166 3.834 14 H 0.072 0.928 15 C -0.104 4.104 16 C -0.131 4.131 17 C 0.148 3.852 18 N -0.601 5.601 19 C -0.258 4.258 20 H 0.065 0.935 21 C -0.044 4.044 22 N -0.921 5.921 23 Si 0.962 3.038 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.277 1.277 27 C 0.175 3.825 28 C -0.112 4.112 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.181 0.819 38 H 0.255 0.745 39 H 0.407 0.593 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.246 0.754 47 H 0.007 0.993 48 H 0.063 0.937 49 H 0.016 0.984 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.057 21.016 7.062 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.277 5.277 3 C -0.118 4.118 4 C -0.001 4.001 5 C -0.097 4.097 6 C -0.246 4.246 7 C -0.061 4.061 8 O -0.069 6.069 9 C -0.139 4.139 10 C 0.379 3.621 11 O -0.410 6.410 12 N -0.358 5.358 13 C 0.062 3.938 14 H 0.090 0.910 15 C -0.142 4.142 16 C -0.172 4.172 17 C 0.020 3.980 18 N -0.323 5.323 19 C -0.388 4.388 20 H 0.083 0.917 21 C -0.240 4.240 22 N -0.567 5.567 23 Si 0.791 3.209 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.202 1.202 27 C 0.051 3.949 28 C -0.152 4.152 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.198 0.802 38 H 0.271 0.729 39 H 0.243 0.757 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.025 0.975 48 H 0.082 0.918 49 H 0.035 0.965 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.519 20.555 6.494 22.520 hybrid contribution -0.054 -0.976 0.877 1.313 sum 6.465 19.579 7.371 21.896 Atomic orbital electron populations 1.22269 0.86363 1.01772 1.00843 1.61730 1.08587 1.14305 1.43122 1.22397 1.00673 0.87895 1.00851 1.20383 0.89530 0.98277 0.91863 1.20645 0.97286 0.95499 0.96263 1.21997 0.90512 1.05990 1.06101 1.25268 1.02196 0.89267 0.89407 1.84069 1.21640 1.50518 1.50634 1.21736 0.80990 1.05336 1.05836 1.16833 0.86476 0.79522 0.79314 1.90861 1.13513 1.70872 1.65711 1.46054 1.11368 1.34416 1.43995 1.20114 0.93992 0.89763 0.89941 0.91007 1.21542 0.97735 1.00003 0.94902 1.22645 0.98253 1.00613 0.95719 1.20468 0.94251 0.91075 0.92240 1.44325 1.81484 1.01764 1.04745 1.19451 1.39711 0.83447 0.96174 0.91728 1.25600 0.99482 1.01232 0.97641 1.70096 1.45681 1.32632 1.08316 0.85367 0.77795 0.81294 0.76443 1.21377 1.22225 1.20213 1.19925 0.93509 0.96082 0.85347 1.21079 1.01155 0.96693 0.96267 0.94554 0.90820 0.92967 0.92029 0.91051 0.94427 0.91603 0.92059 0.80209 0.72915 0.75698 0.90878 0.93270 0.90476 0.92929 0.94844 0.94823 0.94440 0.97499 0.91845 0.96486 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.53 127.69 1.22 2.03 16 2 N -0.55 -14.05 4.54 -953.48 -4.33 -18.37 16 3 C 0.03 0.56 9.40 127.69 1.20 1.76 16 4 C 0.13 3.18 4.50 85.56 0.38 3.56 16 5 C -0.09 -2.32 4.96 -19.74 -0.10 -2.41 16 6 C -0.23 -3.76 10.83 22.07 0.24 -3.52 16 7 C 0.01 0.11 12.08 67.10 0.81 0.92 16 8 O -0.17 -3.99 10.41 -4.96 -0.05 -4.04 16 9 C -0.09 -2.49 7.12 24.08 0.17 -2.32 16 10 C 0.59 20.84 7.64 86.44 0.66 21.50 16 11 O -0.53 -21.81 14.60 -4.33 -0.06 -21.88 16 12 N -0.71 -23.81 5.01 -451.72 -2.26 -26.07 16 13 C 0.17 6.44 2.17 43.91 0.10 6.54 16 14 H 0.07 3.03 5.83 -2.39 -0.01 3.02 16 15 C -0.10 -3.80 5.30 30.29 0.16 -3.64 16 16 C -0.13 -4.76 6.40 31.70 0.20 -4.56 16 17 C 0.15 6.28 5.13 87.42 0.45 6.73 16 18 N -0.60 -30.41 2.61 -708.87 -1.85 -32.26 16 19 C -0.26 -14.10 9.65 84.03 0.81 -13.29 16 20 H 0.07 3.49 7.86 -2.92 -0.02 3.46 16 21 C -0.04 -2.42 5.03 84.86 0.43 -1.99 16 22 N -0.92 -52.27 9.19 21.65 0.20 -52.07 16 23 Si 0.96 44.94 29.58 68.60 2.03 46.97 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 C 0.18 8.90 5.24 83.58 0.44 9.34 16 28 C -0.11 -5.20 4.71 28.35 0.13 -5.06 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.53 8.05 -2.39 -0.02 1.52 16 31 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 32 H 0.06 1.19 7.67 -2.39 -0.02 1.18 16 33 H 0.07 1.23 8.01 -2.39 -0.02 1.21 16 34 H 0.04 0.58 7.99 -2.39 -0.02 0.56 16 35 H 0.07 1.99 7.31 -2.38 -0.02 1.97 16 36 H 0.06 1.22 7.95 -2.39 -0.02 1.20 16 37 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 38 H 0.26 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.41 11.71 8.21 -92.71 -0.76 10.95 16 40 H 0.07 2.21 7.81 -2.39 -0.02 2.19 16 41 H 0.05 2.14 6.83 -2.39 -0.02 2.12 16 42 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.03 1.40 7.99 -2.38 -0.02 1.38 16 45 H 0.03 1.39 6.90 -2.39 -0.02 1.37 16 46 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 47 H 0.01 0.35 8.13 -2.39 -0.02 0.33 16 48 H 0.06 3.60 5.98 -2.39 -0.01 3.59 16 49 H 0.02 0.79 7.90 -2.39 -0.02 0.77 16 50 H 0.08 3.91 5.31 -2.39 -0.01 3.89 16 Total: -1.00 -68.20 389.59 1.16 -67.05 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.18 Total: 25.10 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 7.30 Total: 15.58 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -8.24 Total: -128.78 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.11 Total: -25.92 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.20 1.16 -67.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052661548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.078 kcal (2) G-P(sol) polarization free energy of solvation -68.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds