Wall clock time and date at job start Tue Mar 31 2020 18:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46844 * 111.00317 * 294.20984 * 4 3 2 6 6 C 1.53033 * 109.52669 * 174.16475 * 5 4 3 7 7 C 1.53120 * 109.28099 * 59.17356 * 6 5 4 8 8 C 1.50700 * 109.52320 * 182.44240 * 7 6 5 9 9 O 1.21284 * 119.99724 * 119.68343 * 8 7 6 10 10 N 1.34773 * 119.99878 * 299.68685 * 8 7 6 11 11 C 1.46501 * 119.99781 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.88622 * 31.11694 * 11 10 8 13 13 C 1.54914 * 111.00357 * 267.19528 * 11 10 8 14 14 N 1.47427 * 104.83059 * 204.91616 * 13 11 10 15 15 C 1.36940 * 125.64742 * 204.17571 * 14 13 11 16 16 H 1.08000 * 119.99628 * 359.96573 * 15 14 13 17 17 C 1.38812 * 120.00058 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99640 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47194 * 59.99849 * 19 17 15 21 21 H 1.48501 * 109.47300 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47147 * 299.99883 * 19 17 15 23 23 C 1.47023 * 108.70373 * 24.12720 * 14 13 11 24 24 C 1.54319 * 107.27319 * 358.94230 * 23 14 13 25 25 H 1.08998 * 110.72077 * 96.16550 * 24 23 14 26 26 O 1.42896 * 110.87440 * 219.37523 * 24 23 14 27 27 C 1.42907 * 113.99724 * 263.61024 * 26 24 23 28 28 C 1.53113 * 109.16191 * 302.34923 * 7 6 5 29 29 C 1.46848 * 110.99765 * 169.99724 * 4 3 2 30 30 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 32 32 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 33 33 H 1.08998 * 109.45974 * 294.17884 * 5 4 3 34 34 H 1.09003 * 109.46302 * 54.14147 * 5 4 3 35 35 H 1.09008 * 109.50137 * 299.24004 * 6 5 4 36 36 H 1.08995 * 109.53645 * 179.14195 * 6 5 4 37 37 H 1.09001 * 109.57116 * 62.28804 * 7 6 5 38 38 H 0.96994 * 120.00610 * 0.02562 * 10 8 7 39 39 H 1.08997 * 110.36487 * 323.75379 * 13 11 10 40 40 H 1.09000 * 110.36360 * 86.08005 * 13 11 10 41 41 H 0.97007 * 119.99545 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.88333 * 239.52299 * 23 14 13 43 43 H 1.09003 * 110.01267 * 118.43177 * 23 14 13 44 44 H 1.08997 * 109.47228 * 59.99588 * 27 26 24 45 45 H 1.09000 * 109.47210 * 179.97438 * 27 26 24 46 46 H 1.09005 * 109.46669 * 299.99458 * 27 26 24 47 47 H 1.09002 * 109.50807 * 297.71507 * 28 7 6 48 48 H 1.08997 * 109.53546 * 177.61386 * 28 7 6 49 49 H 1.08996 * 109.46418 * 305.85486 * 29 4 3 50 50 H 1.09005 * 109.46141 * 65.82636 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.7820 -2.2575 0.8619 6 6 3.1784 -3.6923 0.5069 7 6 4.6853 -3.7496 0.2413 8 6 5.0719 -5.1478 -0.1672 9 8 5.5773 -5.3447 -1.2520 10 7 4.8560 -6.1792 0.6730 11 6 5.2323 -7.5383 0.2761 12 1 6.1002 -7.5243 -0.3833 13 6 4.0410 -8.2727 -0.3882 14 7 4.3149 -9.7056 -0.1751 15 6 3.8343 -10.7327 -0.9428 16 1 3.1952 -10.5222 -1.7876 17 6 4.1686 -12.0444 -0.6351 18 7 4.9477 -12.3008 0.3942 19 14 3.5125 -13.4455 -1.6819 20 1 3.9762 -13.2762 -3.0825 21 1 4.0113 -14.7382 -1.1476 22 1 2.0279 -13.4361 -1.6474 23 6 5.1903 -9.8491 0.9973 24 6 5.4930 -8.4289 1.5197 25 1 4.8162 -8.1643 2.3321 26 8 6.8538 -8.3211 1.9423 27 6 7.0425 -8.5053 3.3468 28 6 5.0347 -2.7725 -0.8845 29 6 4.5845 -1.3642 -0.4892 30 1 -1.0498 -0.0004 0.0001 31 1 3.0090 0.6649 -0.7843 32 1 3.0092 0.3479 0.9672 33 1 3.3111 -1.9469 1.7628 34 1 1.7073 -2.2104 1.0376 35 1 2.6393 -4.0085 -0.3862 36 1 2.9295 -4.3549 1.3358 37 1 5.2263 -3.4717 1.1459 38 1 4.4514 -6.0218 1.5404 39 1 3.1049 -7.9898 0.0932 40 1 4.0036 -8.0481 -1.4541 41 1 5.1810 -13.2175 0.6094 42 1 6.1179 -10.3436 0.7091 43 1 4.6861 -10.4288 1.7706 44 1 6.6944 -9.4977 3.6331 45 1 8.1013 -8.4088 3.5869 46 1 6.4757 -7.7502 3.8916 47 1 4.5247 -3.0741 -1.7995 48 1 6.1120 -2.7772 -1.0500 49 1 4.8190 -0.6685 -1.2948 50 1 5.1052 -1.0579 0.4181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082384403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:57 Heat of formation + Delta-G solvation = 8.306287 kcal Electronic energy + Delta-G solvation = -29456.728021 eV Core-core repulsion = 25486.467569 eV Total energy + Delta-G solvation = -3970.260452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.30151 -38.93430 -37.96938 -35.90811 -34.76066 -34.04334 -32.49552 -31.65284 -31.03561 -28.85615 -27.86972 -26.86707 -26.11477 -24.51247 -23.66001 -23.37241 -20.99349 -20.49864 -20.16520 -19.60999 -18.45014 -17.49727 -16.79155 -16.55918 -16.05846 -15.58778 -15.51764 -15.14365 -14.95254 -14.67437 -14.44668 -14.24835 -14.00183 -13.86607 -13.47748 -13.28237 -13.17791 -13.02737 -12.69645 -12.35512 -12.15716 -11.87937 -11.66090 -11.55238 -11.40845 -11.23192 -11.00861 -11.00199 -10.78392 -10.77785 -10.73182 -10.63840 -10.43087 -10.16838 -9.98575 -9.78153 -9.57358 -9.10304 -8.72811 -8.71876 -8.54855 -6.87896 -5.72218 -3.07239 2.38788 2.55459 2.83158 3.31643 3.42527 3.46281 3.47770 3.68964 4.07212 4.14161 4.43126 4.51698 4.54209 4.67349 4.88975 4.94546 5.00131 5.08747 5.15010 5.16888 5.26934 5.29981 5.39469 5.45276 5.49173 5.55291 5.57034 5.62540 5.65217 5.69453 5.73093 5.81875 5.87184 5.91557 5.99061 6.07091 6.17762 6.21289 6.55560 6.63864 6.64886 6.71279 6.88482 7.26152 7.32960 7.48711 7.70519 7.73381 7.87351 8.21426 8.45362 9.18627 9.78741 10.41937 11.39141 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002515 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.533282 B =11131.023910 C =12126.152358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.163 3.837 4 N -0.537 5.537 5 C 0.058 3.942 6 C -0.108 4.108 7 C -0.107 4.107 8 C 0.518 3.482 9 O -0.536 6.536 10 N -0.716 5.716 11 C 0.132 3.868 12 H 0.106 0.894 13 C 0.131 3.869 14 N -0.600 5.600 15 C -0.229 4.229 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.165 3.835 24 C 0.055 3.945 25 H 0.062 0.938 26 O -0.378 6.378 27 C 0.035 3.965 28 C -0.096 4.096 29 C 0.057 3.943 30 H 0.217 0.783 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.394 0.606 39 H 0.023 0.977 40 H 0.049 0.951 41 H 0.253 0.747 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.032 0.968 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 24.118 6.774 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.036 3.964 4 N -0.262 5.262 5 C -0.069 4.069 6 C -0.146 4.146 7 C -0.129 4.129 8 C 0.304 3.696 9 O -0.412 6.412 10 N -0.366 5.366 11 C 0.026 3.974 12 H 0.124 0.876 13 C 0.004 3.996 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.040 3.960 24 C -0.004 4.004 25 H 0.080 0.920 26 O -0.296 6.296 27 C -0.062 4.062 28 C -0.134 4.134 29 C -0.070 4.070 30 H 0.234 0.766 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.228 0.772 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.051 0.949 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.210 23.576 5.434 24.295 hybrid contribution -0.547 -0.535 1.021 1.276 sum -2.756 23.041 6.455 24.087 Atomic orbital electron populations 1.24915 0.95931 0.99400 1.01202 1.22815 0.94187 1.00961 1.00244 1.18979 0.85249 0.90977 1.01175 1.61881 1.14466 1.07375 1.42435 1.22104 1.01193 0.92444 0.91202 1.21588 0.93841 0.96089 1.03063 1.21393 0.97798 0.92961 1.00738 1.20484 0.78126 0.86370 0.84652 1.90716 1.43219 1.85321 1.21945 1.45959 1.63511 1.07349 1.19784 1.22396 0.99469 0.79141 0.96368 0.87606 1.21817 0.93787 0.85515 0.98494 1.44249 1.57157 0.99675 1.31719 1.19033 1.24550 0.84654 1.07423 0.90198 1.24818 0.99849 0.97262 0.98427 1.69933 1.39718 1.18711 1.28686 0.86153 0.78303 0.81422 0.79613 1.21031 1.21589 1.21140 1.21540 0.96003 0.88787 0.89675 1.23853 0.82559 0.98843 0.95126 0.92040 1.87914 1.26267 1.92576 1.22813 1.22705 1.01438 0.99796 0.82292 1.21401 1.01834 0.91871 0.98315 1.22151 0.86142 0.98305 1.00396 0.76632 0.88403 0.92497 0.94515 0.90245 0.90102 0.90762 0.89011 0.77190 0.95980 0.93235 0.93622 0.92007 0.93410 0.93662 0.90276 0.94905 0.89913 0.90453 0.90061 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.18 -1.61 12.34 -37.12 -0.46 -2.06 16 3 C 0.16 1.20 5.46 -6.61 -0.04 1.16 16 4 N -0.54 -4.67 4.63 -238.18 -1.10 -5.77 16 5 C 0.06 0.48 5.30 -3.84 -0.02 0.46 16 6 C -0.11 -1.00 5.26 -26.65 -0.14 -1.14 16 7 C -0.11 -1.11 2.59 -91.65 -0.24 -1.35 16 8 C 0.52 7.63 7.16 -10.99 -0.08 7.55 16 9 O -0.54 -10.24 15.62 5.55 0.09 -10.15 16 10 N -0.72 -10.34 5.10 -51.72 -0.26 -10.60 16 11 C 0.13 2.48 3.15 -65.78 -0.21 2.28 16 12 H 0.11 2.31 7.54 -51.93 -0.39 1.92 16 13 C 0.13 2.83 6.93 -2.52 -0.02 2.81 16 14 N -0.60 -15.57 3.39 -170.07 -0.58 -16.15 16 15 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 16 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 C 0.17 4.04 5.15 -3.07 -0.02 4.02 16 24 C 0.06 1.05 3.09 -24.90 -0.08 0.97 16 25 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 26 O -0.38 -6.97 10.44 -35.23 -0.37 -7.34 16 27 C 0.03 0.48 10.85 101.05 1.10 1.58 16 28 C -0.10 -0.99 4.68 -26.65 -0.12 -1.11 16 29 C 0.06 0.45 5.46 -3.83 -0.02 0.43 16 30 H 0.22 1.04 7.80 -54.10 -0.42 0.62 16 31 H 0.10 0.59 7.99 -51.93 -0.41 0.18 16 32 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.69 7.11 -51.93 -0.37 0.32 16 35 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.39 4.47 8.05 -40.82 -0.33 4.14 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 42 H 0.06 1.72 7.30 -51.93 -0.38 1.34 16 43 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 47 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.08 0.55 8.01 -51.93 -0.42 0.14 16 50 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 403.14 15.07 6.08 6.08 Total: -1.00 -34.07 403.14 -9.14 -43.21 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.52 Total: 2.34 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -0.02 Total: 7.68 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -1.37 Total: -59.11 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.28 Total: -17.49 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.07 -9.14 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082384403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.514 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds