Wall clock time and date at job start Tue Mar 31 2020 18:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46844 * 111.00317 * 294.20984 * 4 3 2 6 6 C 1.53033 * 109.52669 * 174.16475 * 5 4 3 7 7 C 1.53120 * 109.28099 * 59.17356 * 6 5 4 8 8 C 1.50700 * 109.52320 * 182.44240 * 7 6 5 9 9 O 1.21284 * 119.99724 * 119.68343 * 8 7 6 10 10 N 1.34773 * 119.99878 * 299.68685 * 8 7 6 11 11 C 1.46501 * 119.99781 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.88622 * 31.11694 * 11 10 8 13 13 C 1.54914 * 111.00357 * 267.19528 * 11 10 8 14 14 N 1.47427 * 104.83059 * 204.91616 * 13 11 10 15 15 C 1.36940 * 125.64742 * 204.17571 * 14 13 11 16 16 H 1.08000 * 119.99628 * 359.96573 * 15 14 13 17 17 C 1.38812 * 120.00058 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99640 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47194 * 59.99849 * 19 17 15 21 21 H 1.48501 * 109.47300 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47147 * 299.99883 * 19 17 15 23 23 C 1.47023 * 108.70373 * 24.12720 * 14 13 11 24 24 C 1.54319 * 107.27319 * 358.94230 * 23 14 13 25 25 H 1.08998 * 110.72077 * 96.16550 * 24 23 14 26 26 O 1.42896 * 110.87440 * 219.37523 * 24 23 14 27 27 C 1.42907 * 113.99724 * 263.61024 * 26 24 23 28 28 C 1.53113 * 109.16191 * 302.34923 * 7 6 5 29 29 C 1.46848 * 110.99765 * 169.99724 * 4 3 2 30 30 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 32 32 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 33 33 H 1.08998 * 109.45974 * 294.17884 * 5 4 3 34 34 H 1.09003 * 109.46302 * 54.14147 * 5 4 3 35 35 H 1.09008 * 109.50137 * 299.24004 * 6 5 4 36 36 H 1.08995 * 109.53645 * 179.14195 * 6 5 4 37 37 H 1.09001 * 109.57116 * 62.28804 * 7 6 5 38 38 H 0.96994 * 120.00610 * 0.02562 * 10 8 7 39 39 H 1.08997 * 110.36487 * 323.75379 * 13 11 10 40 40 H 1.09000 * 110.36360 * 86.08005 * 13 11 10 41 41 H 0.97007 * 119.99545 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.88333 * 239.52299 * 23 14 13 43 43 H 1.09003 * 110.01267 * 118.43177 * 23 14 13 44 44 H 1.08997 * 109.47228 * 59.99588 * 27 26 24 45 45 H 1.09000 * 109.47210 * 179.97438 * 27 26 24 46 46 H 1.09005 * 109.46669 * 299.99458 * 27 26 24 47 47 H 1.09002 * 109.50807 * 297.71507 * 28 7 6 48 48 H 1.08997 * 109.53546 * 177.61386 * 28 7 6 49 49 H 1.08996 * 109.46418 * 305.85486 * 29 4 3 50 50 H 1.09005 * 109.46141 * 65.82636 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.7820 -2.2575 0.8619 6 6 3.1784 -3.6923 0.5069 7 6 4.6853 -3.7496 0.2413 8 6 5.0719 -5.1478 -0.1672 9 8 5.5773 -5.3447 -1.2520 10 7 4.8560 -6.1792 0.6730 11 6 5.2323 -7.5383 0.2761 12 1 6.1002 -7.5243 -0.3833 13 6 4.0410 -8.2727 -0.3882 14 7 4.3149 -9.7056 -0.1751 15 6 3.8343 -10.7327 -0.9428 16 1 3.1952 -10.5222 -1.7876 17 6 4.1686 -12.0444 -0.6351 18 7 4.9477 -12.3008 0.3942 19 14 3.5125 -13.4455 -1.6819 20 1 3.9762 -13.2762 -3.0825 21 1 4.0113 -14.7382 -1.1476 22 1 2.0279 -13.4361 -1.6474 23 6 5.1903 -9.8491 0.9973 24 6 5.4930 -8.4289 1.5197 25 1 4.8162 -8.1643 2.3321 26 8 6.8538 -8.3211 1.9423 27 6 7.0425 -8.5053 3.3468 28 6 5.0347 -2.7725 -0.8845 29 6 4.5845 -1.3642 -0.4892 30 1 -1.0498 -0.0004 0.0001 31 1 3.0090 0.6649 -0.7843 32 1 3.0092 0.3479 0.9672 33 1 3.3111 -1.9469 1.7628 34 1 1.7073 -2.2104 1.0376 35 1 2.6393 -4.0085 -0.3862 36 1 2.9295 -4.3549 1.3358 37 1 5.2263 -3.4717 1.1459 38 1 4.4514 -6.0218 1.5404 39 1 3.1049 -7.9898 0.0932 40 1 4.0036 -8.0481 -1.4541 41 1 5.1810 -13.2175 0.6094 42 1 6.1179 -10.3436 0.7091 43 1 4.6861 -10.4288 1.7706 44 1 6.6944 -9.4977 3.6331 45 1 8.1013 -8.4088 3.5869 46 1 6.4757 -7.7502 3.8916 47 1 4.5247 -3.0741 -1.7995 48 1 6.1120 -2.7772 -1.0500 49 1 4.8190 -0.6685 -1.2948 50 1 5.1052 -1.0579 0.4181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082384403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:56 Heat of formation + Delta-G solvation = -16.655867 kcal Electronic energy + Delta-G solvation = -29457.810461 eV Core-core repulsion = 25486.467569 eV Total energy + Delta-G solvation = -3971.342892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42047 -40.11157 -39.18006 -37.51260 -35.63426 -35.49442 -33.74571 -32.99157 -31.75359 -30.57928 -29.13253 -28.06259 -27.50548 -26.12616 -24.67522 -24.10160 -22.40059 -22.10106 -21.55405 -20.58351 -19.15947 -18.98858 -18.26316 -17.87015 -17.22044 -16.93754 -16.50031 -16.20535 -15.98059 -15.81667 -15.77077 -15.60722 -15.19872 -15.01512 -14.78184 -14.61063 -14.13126 -14.05081 -13.84891 -13.70021 -13.61211 -13.18939 -12.99932 -12.94468 -12.73260 -12.58616 -12.48379 -12.31420 -12.14420 -12.12378 -11.87334 -11.76819 -11.63194 -11.48829 -11.27062 -11.01344 -10.84112 -10.77539 -10.53364 -10.06910 -9.27824 -8.97981 -7.88505 -5.26799 1.44573 1.48638 1.54634 1.64657 1.79720 1.97046 2.07256 2.46047 2.77341 3.11379 3.30573 3.52539 3.55718 3.55905 3.78114 3.80436 3.91663 3.94235 4.07731 4.23727 4.25376 4.38049 4.40518 4.44636 4.45594 4.55340 4.59753 4.60866 4.65078 4.70277 4.78294 4.81425 4.87608 4.91204 4.95637 5.00059 5.12800 5.16299 5.22288 5.32645 5.36236 5.39497 5.48993 5.64830 6.07021 6.12513 6.13142 6.31651 6.56994 6.75984 7.03635 7.28792 7.68672 8.31196 9.20757 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002515 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.533282 B =11131.023910 C =12126.152358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.210 4.210 3 C 0.163 3.837 4 N -0.556 5.556 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.094 4.094 8 C 0.515 3.485 9 O -0.585 6.585 10 N -0.700 5.700 11 C 0.150 3.850 12 H 0.072 0.928 13 C 0.132 3.868 14 N -0.622 5.622 15 C -0.249 4.249 16 H 0.082 0.918 17 C -0.062 4.062 18 N -0.949 5.949 19 Si 0.982 3.018 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.273 1.273 23 C 0.175 3.825 24 C 0.077 3.923 25 H 0.098 0.902 26 O -0.398 6.398 27 C 0.026 3.974 28 C -0.095 4.095 29 C 0.065 3.935 30 H 0.239 0.761 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.415 0.585 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.249 0.751 42 H 0.015 0.985 43 H 0.023 0.977 44 H 0.034 0.966 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.090 0.910 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 26.426 8.589 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.210 4.210 3 C 0.037 3.963 4 N -0.282 5.282 5 C -0.065 4.065 6 C -0.142 4.142 7 C -0.115 4.115 8 C 0.304 3.696 9 O -0.464 6.464 10 N -0.352 5.352 11 C 0.043 3.957 12 H 0.090 0.910 13 C 0.005 3.995 14 N -0.350 5.350 15 C -0.377 4.377 16 H 0.100 0.900 17 C -0.255 4.255 18 N -0.597 5.597 19 Si 0.809 3.191 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.199 1.199 23 C 0.049 3.951 24 C 0.018 3.982 25 H 0.116 0.884 26 O -0.316 6.316 27 C -0.070 4.070 28 C -0.134 4.134 29 C -0.062 4.062 30 H 0.255 0.745 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.142 0.858 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.034 0.966 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.118 0.882 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.109 0.891 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.027 25.937 7.285 27.110 hybrid contribution -0.295 -1.226 0.432 1.333 sum -3.321 24.711 7.717 26.100 Atomic orbital electron populations 1.25644 0.96899 0.98708 1.00703 1.23384 0.95170 1.01637 1.00835 1.19070 0.84535 0.90331 1.02413 1.61819 1.14924 1.08347 1.43096 1.22052 1.01177 0.91446 0.91809 1.21574 0.92417 0.97540 1.02627 1.21403 0.98913 0.89406 1.01808 1.21363 0.76713 0.87868 0.83703 1.90704 1.45355 1.86171 1.24178 1.45719 1.63360 1.05367 1.20773 1.21798 0.96966 0.81326 0.95628 0.90999 1.21920 0.95755 0.83783 0.98012 1.44521 1.57282 1.01113 1.32058 1.19410 1.24655 0.85793 1.07870 0.90028 1.25685 1.00390 0.99663 0.99805 1.70158 1.40778 1.18705 1.30089 0.85112 0.78134 0.77952 0.77878 1.20608 1.21700 1.19875 1.21280 0.93277 0.91958 0.88594 1.23494 0.83947 0.94931 0.95857 0.88432 1.87898 1.25607 1.92351 1.25783 1.22997 1.03490 1.00362 0.80124 1.21365 1.01227 0.93610 0.97184 1.22079 0.85953 0.96501 1.01658 0.74499 0.87434 0.90872 0.92529 0.90693 0.92680 0.88900 0.85794 0.74726 0.93870 0.95030 0.94165 0.96627 0.95914 0.94693 0.88184 0.91542 0.92928 0.90977 0.89139 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.89 19.25 74.32 1.43 -1.46 16 2 C -0.21 -3.35 12.34 31.13 0.38 -2.96 16 3 C 0.16 1.99 5.46 84.50 0.46 2.45 16 4 N -0.56 -8.41 4.63 -907.46 -4.21 -12.61 16 5 C 0.06 0.86 5.30 86.32 0.46 1.32 16 6 C -0.10 -1.68 5.26 30.65 0.16 -1.51 16 7 C -0.09 -1.73 2.59 -11.46 -0.03 -1.76 16 8 C 0.52 14.71 7.16 87.66 0.63 15.33 16 9 O -0.58 -22.87 15.62 -3.04 -0.05 -22.91 16 10 N -0.70 -19.02 5.10 -435.94 -2.22 -21.25 16 11 C 0.15 5.65 3.15 46.39 0.15 5.80 16 12 H 0.07 3.25 7.54 -2.39 -0.02 3.24 16 13 C 0.13 5.76 6.93 86.86 0.60 6.36 16 14 N -0.62 -33.25 3.39 -691.97 -2.35 -35.60 16 15 C -0.25 -14.44 10.28 84.03 0.86 -13.57 16 16 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 17 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 18 N -0.95 -57.78 10.31 21.65 0.22 -57.56 16 19 Si 0.98 46.69 29.55 68.60 2.03 48.71 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.17 8.82 5.15 86.73 0.45 9.27 16 24 C 0.08 2.86 3.09 31.78 0.10 2.96 16 25 H 0.10 2.94 7.68 -2.39 -0.02 2.92 16 26 O -0.40 -14.33 10.44 -148.98 -1.56 -15.89 16 27 C 0.03 0.67 10.85 113.37 1.23 1.90 16 28 C -0.10 -1.85 4.68 30.65 0.14 -1.71 16 29 C 0.07 0.86 5.46 86.33 0.47 1.33 16 30 H 0.24 1.84 7.80 -4.43 -0.03 1.81 16 31 H 0.11 1.06 7.99 -2.39 -0.02 1.04 16 32 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.07 1.12 7.11 -2.39 -0.02 1.10 16 35 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.09 1.15 7.66 -2.39 -0.02 1.13 16 37 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.42 7.93 8.05 -92.71 -0.75 7.18 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 42 H 0.02 0.91 7.30 -2.39 -0.02 0.90 16 43 H 0.02 1.24 7.51 -2.39 -0.02 1.22 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 1.29 8.11 -2.38 -0.02 1.27 16 47 H 0.05 1.33 8.04 -2.39 -0.02 1.31 16 48 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.09 1.03 8.01 -2.39 -0.02 1.01 16 50 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -78.82 403.14 -0.01 -78.82 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.17 Total: 17.69 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 7.96 Total: 20.60 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -8.56 Total: -127.02 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.60 Total: -38.80 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.82 -0.01 -78.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082384403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.166 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds