Wall clock time and date at job start Tue Mar 31 2020 18:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46494 * 120.00085 * 2 1 4 4 C 1.34779 * 119.99972 * 180.02562 * 2 1 3 5 5 O 1.21278 * 119.99779 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00058 * 179.97438 * 4 2 1 7 7 H 1.08996 * 115.55917 * 340.23527 * 6 4 2 8 8 C 1.52994 * 117.49838 * 194.54334 * 6 4 2 9 9 C 1.52997 * 117.49772 * 125.92066 * 6 4 2 10 10 H 1.08998 * 117.51985 * 214.97015 * 9 6 4 11 11 C 1.50701 * 117.49924 * 359.97438 * 9 6 4 12 12 O 1.21285 * 119.99645 * 78.64871 * 11 9 6 13 13 N 1.34774 * 120.00279 * 258.64459 * 11 9 6 14 14 C 1.47071 * 121.16229 * 359.94267 * 13 11 9 15 15 C 1.52840 * 107.95558 * 122.74998 * 14 13 11 16 16 C 1.53090 * 110.57206 * 57.34758 * 15 14 13 17 17 H 1.08997 * 113.06295 * 70.99085 * 16 15 14 18 18 C 1.56025 * 106.39373 * 195.41822 * 16 15 14 19 19 C 1.54499 * 102.61462 * 78.38161 * 18 16 15 20 20 N 1.47430 * 107.15091 * 22.84473 * 19 18 16 21 21 C 1.36933 * 126.06402 * 181.60455 * 20 19 18 22 22 H 1.08001 * 120.00302 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99999 * 0.02569 * 21 20 19 24 24 N 1.31629 * 119.99703 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00306 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47243 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47654 * 119.99571 * 25 23 21 28 28 H 1.48503 * 109.47043 * 239.99705 * 25 23 21 29 29 C 1.46469 * 107.87868 * 1.62311 * 20 19 18 30 30 H 1.08998 * 108.42081 * 89.23373 * 29 20 19 31 31 C 1.46758 * 121.21154 * 180.02562 * 13 11 9 32 32 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46805 * 299.99893 * 1 2 3 34 34 H 1.09005 * 109.47355 * 59.99524 * 1 2 3 35 35 H 1.09003 * 109.47604 * 270.00461 * 3 2 1 36 36 H 1.09004 * 109.47431 * 30.00147 * 3 2 1 37 37 H 1.08999 * 109.47636 * 150.00149 * 3 2 1 38 38 H 1.09007 * 117.49848 * 145.02191 * 8 6 4 39 39 H 1.09001 * 117.52023 * 359.97438 * 8 6 4 40 40 H 1.08992 * 109.77438 * 3.12838 * 14 13 11 41 41 H 1.09005 * 109.80341 * 242.38724 * 14 13 11 42 42 H 1.08997 * 109.25551 * 297.06221 * 15 14 13 43 43 H 1.08998 * 109.22254 * 177.60764 * 15 14 13 44 44 H 1.09005 * 110.77776 * 320.10079 * 18 16 15 45 45 H 1.09000 * 110.78136 * 196.67028 * 18 16 15 46 46 H 1.09005 * 109.90138 * 263.45955 * 19 18 16 47 47 H 1.09002 * 110.04789 * 142.30945 * 19 18 16 48 48 H 0.96999 * 119.99815 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.22539 * 112.17913 * 31 13 11 50 50 H 1.08998 * 109.23009 * 352.77228 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 1 4.1160 -0.2418 -0.3336 8 6 4.3522 -2.4808 -0.3425 9 6 4.3527 -1.9637 1.0975 10 1 5.2881 -1.5626 1.4878 11 6 3.4887 -2.6876 2.0977 12 8 2.9709 -3.7432 1.8000 13 7 3.2912 -2.1621 3.3229 14 6 3.9076 -0.8845 3.7114 15 6 2.7897 0.0698 4.1305 16 6 1.9653 -0.5349 5.2699 17 1 2.5048 -0.5680 6.2164 18 6 0.6489 0.2988 5.3515 19 6 -0.1847 -0.2715 4.1824 20 7 0.3306 -1.6237 3.9001 21 6 -0.1115 -2.4653 2.9146 22 1 0.3382 -3.4399 2.7948 23 6 -1.1377 -2.0659 2.0694 24 7 -1.6861 -0.8782 2.2157 25 14 -1.7414 -3.2142 0.7255 26 1 -0.9670 -4.4805 0.7716 27 1 -3.1822 -3.5068 0.9345 28 1 -1.5545 -2.5681 -0.5985 29 6 1.3991 -1.9074 4.8609 30 1 0.9545 -2.3625 5.7459 31 6 2.4554 -2.8446 4.3176 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.3792 1.5834 -1.0277 36 1 1.6085 2.0284 0.5139 37 1 3.1500 1.1384 0.5138 38 1 5.2871 -2.4195 -0.8996 39 1 3.7271 -3.3453 -0.5663 40 1 4.4520 -0.4654 2.8653 41 1 4.5899 -1.0425 4.5467 42 1 2.1390 0.2582 3.2766 43 1 3.2273 1.0109 4.4635 44 1 0.8526 1.3589 5.2003 45 1 0.1444 0.1328 6.3034 46 1 -0.0699 0.3607 3.3019 47 1 -1.2360 -0.3266 4.4650 48 1 -2.4034 -0.5993 1.6254 49 1 3.0842 -3.1913 5.1377 50 1 1.9695 -3.7015 3.8509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085033737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:33 Heat of formation + Delta-G solvation = 15.626657 kcal Electronic energy + Delta-G solvation = -33767.262780 eV Core-core repulsion = 29797.319763 eV Total energy + Delta-G solvation = -3969.943017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.31541 -39.14312 -37.89996 -35.58779 -34.84340 -34.69413 -32.73182 -31.13372 -29.18713 -28.38092 -27.64740 -26.06348 -25.02593 -24.36537 -22.83695 -22.50129 -22.41521 -19.90873 -19.50136 -18.59099 -17.85808 -17.42672 -16.43645 -15.94681 -15.67071 -15.06975 -14.94676 -14.69934 -14.53029 -14.33566 -13.87200 -13.84909 -13.47464 -13.01075 -12.79456 -12.61090 -12.45738 -12.30007 -12.14712 -11.92673 -11.76493 -11.61453 -11.52972 -11.46167 -11.26903 -11.06677 -10.85317 -10.65635 -10.36451 -10.32893 -10.05708 -9.92020 -9.80094 -9.71268 -9.56048 -9.35884 -9.20192 -8.94240 -8.37333 -7.97002 -7.88912 -6.59041 -5.49039 -2.79046 2.80934 3.36567 3.51147 3.61235 3.64738 3.68038 3.83883 4.27315 4.73950 4.77658 4.88346 4.94875 5.07012 5.14132 5.18231 5.28922 5.38403 5.40816 5.57697 5.62064 5.62886 5.69556 5.76852 5.78678 5.81558 5.87072 5.88075 6.03936 6.10687 6.18667 6.22704 6.32655 6.34757 6.36155 6.49094 6.54097 6.67182 6.69539 6.82097 6.99311 7.18705 7.21384 7.22673 7.68234 7.73247 8.04733 8.05665 8.07638 8.42313 8.89117 8.97145 9.44722 10.06015 10.66998 11.62535 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009177 B = 0.008960 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.263770 B = 3124.303731 C = 4205.557632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.611 5.611 3 C 0.085 3.915 4 C 0.529 3.471 5 O -0.489 6.489 6 C -0.168 4.168 7 H 0.122 0.878 8 C -0.120 4.120 9 C -0.159 4.159 10 H 0.124 0.876 11 C 0.547 3.453 12 O -0.510 6.510 13 N -0.593 5.593 14 C 0.113 3.887 15 C -0.120 4.120 16 C -0.101 4.101 17 H 0.073 0.927 18 C -0.145 4.145 19 C 0.182 3.818 20 N -0.585 5.585 21 C -0.187 4.187 22 H 0.077 0.923 23 C 0.006 3.994 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.307 1.307 28 H -0.291 1.291 29 C 0.154 3.846 30 H 0.023 0.977 31 C 0.117 3.883 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.244 0.756 49 H 0.050 0.950 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.348 7.871 0.761 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.346 5.346 3 C -0.059 4.059 4 C 0.315 3.685 5 O -0.362 6.362 6 C -0.189 4.189 7 H 0.139 0.861 8 C -0.158 4.158 9 C -0.181 4.181 10 H 0.142 0.858 11 C 0.333 3.667 12 O -0.384 6.384 13 N -0.327 5.327 14 C -0.010 4.010 15 C -0.158 4.158 16 C -0.121 4.121 17 H 0.091 0.909 18 C -0.183 4.183 19 C 0.058 3.942 20 N -0.310 5.310 21 C -0.315 4.315 22 H 0.094 0.906 23 C -0.188 4.188 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.236 1.236 28 H -0.218 1.218 29 C 0.046 3.954 30 H 0.040 0.960 31 C -0.007 4.007 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.528 6.664 0.410 15.086 hybrid contribution -0.273 0.006 -0.678 0.731 sum 13.255 6.671 -0.268 14.841 Atomic orbital electron populations 1.22229 0.77253 1.05995 1.00330 1.47463 1.07679 1.05033 1.74415 1.21635 0.97034 0.86710 1.00484 1.19344 0.87507 0.84100 0.77584 1.90805 1.68723 1.30255 1.46386 1.22390 0.94064 0.98032 1.04462 0.86059 1.22987 1.01568 0.96860 0.94382 1.22211 1.00555 1.04128 0.91215 0.85811 1.19155 0.80765 0.85417 0.81347 1.90710 1.48231 1.22827 1.76601 1.47627 1.49361 1.22375 1.13347 1.21574 0.95209 0.84667 0.99559 1.21801 0.97262 0.96801 0.99941 1.22366 0.95951 0.97094 0.96701 0.90913 1.23173 0.96408 0.98237 1.00472 1.21177 0.94801 0.85651 0.92600 1.44301 1.36701 1.14861 1.35108 1.18975 1.12179 0.95878 1.04497 0.90564 1.24375 0.99012 0.96607 0.98829 1.70000 1.28542 1.18769 1.40689 0.86190 0.76255 0.81164 0.82559 1.20611 1.23622 1.21843 1.20691 0.89303 0.92618 0.92835 0.95979 1.21343 0.91937 0.97207 0.90193 0.88228 0.89407 0.95686 0.93707 0.91391 0.91829 0.87657 0.86316 0.90823 0.92194 0.90131 0.92464 0.92591 0.92929 0.93836 0.94180 0.94609 0.93173 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.79 9.56 59.85 0.57 2.37 16 2 N -0.61 -11.39 3.27 -189.51 -0.62 -12.01 16 3 C 0.09 1.11 10.03 59.84 0.60 1.71 16 4 C 0.53 10.64 6.82 -10.98 -0.07 10.57 16 5 O -0.49 -12.34 13.40 -8.41 -0.11 -12.45 16 6 C -0.17 -2.50 5.21 -91.78 -0.48 -2.97 16 7 H 0.12 1.35 6.57 -51.93 -0.34 1.00 16 8 C -0.12 -1.73 9.55 -26.74 -0.26 -1.98 16 9 C -0.16 -2.36 4.71 -91.77 -0.43 -2.79 16 10 H 0.12 1.35 7.30 -51.93 -0.38 0.97 16 11 C 0.55 10.67 6.18 -10.99 -0.07 10.61 16 12 O -0.51 -12.37 14.82 -8.42 -0.12 -12.50 16 13 N -0.59 -10.57 2.96 -174.13 -0.52 -11.09 16 14 C 0.11 1.55 6.34 -3.81 -0.02 1.52 16 15 C -0.12 -1.78 5.04 -26.77 -0.13 -1.92 16 16 C -0.10 -1.64 3.68 -88.43 -0.33 -1.97 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.14 -2.54 6.33 -24.33 -0.15 -2.70 16 19 C 0.18 4.16 4.62 -2.75 -0.01 4.15 16 20 N -0.58 -14.11 3.20 -164.40 -0.53 -14.63 16 21 C -0.19 -5.21 9.70 -15.06 -0.15 -5.35 16 22 H 0.08 2.33 6.51 -52.49 -0.34 1.98 16 23 C 0.01 0.16 4.22 -17.43 -0.07 0.08 16 24 N -0.93 -25.60 8.17 55.49 0.45 -25.15 16 25 Si 0.90 24.99 27.06 -169.99 -4.60 20.39 16 26 H -0.28 -8.19 7.11 56.52 0.40 -7.79 16 27 H -0.31 -8.48 7.11 56.52 0.40 -8.08 16 28 H -0.29 -8.06 6.55 56.52 0.37 -7.69 16 29 C 0.15 3.08 2.97 -68.28 -0.20 2.87 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 C 0.12 2.24 5.69 -4.75 -0.03 2.22 16 32 H 0.10 2.55 2.76 -51.93 -0.14 2.40 16 33 H 0.09 2.02 6.78 -51.93 -0.35 1.67 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 37 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.12 2.14 7.31 -51.93 -0.38 1.76 16 40 H 0.07 0.86 5.91 -51.93 -0.31 0.55 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.51 6.85 -51.93 -0.36 1.15 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.04 1.09 7.04 -51.93 -0.37 0.73 16 47 H 0.04 1.04 7.56 -51.93 -0.39 0.65 16 48 H 0.24 6.70 8.31 -40.82 -0.34 6.36 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 2.18 5.54 -51.93 -0.29 1.89 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -34.30 368.44 -9.51 -43.81 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.78 Total: 1.67 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: -1.24 Total: 16.41 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -1.21 Total: -62.88 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.24 Total: -24.95 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.60 Total: 20.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.30 -9.51 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085033737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.438 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds