Wall clock time and date at job start Tue Mar 31 2020 18:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46494 * 120.00085 * 2 1 4 4 C 1.34779 * 119.99972 * 180.02562 * 2 1 3 5 5 O 1.21278 * 119.99779 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00058 * 179.97438 * 4 2 1 7 7 H 1.08996 * 115.55917 * 340.23527 * 6 4 2 8 8 C 1.52994 * 117.49838 * 194.54334 * 6 4 2 9 9 C 1.52997 * 117.49772 * 125.92066 * 6 4 2 10 10 H 1.08998 * 117.51985 * 214.97015 * 9 6 4 11 11 C 1.50701 * 117.49924 * 359.97438 * 9 6 4 12 12 O 1.21285 * 119.99645 * 78.64871 * 11 9 6 13 13 N 1.34774 * 120.00279 * 258.64459 * 11 9 6 14 14 C 1.47071 * 121.16229 * 359.94267 * 13 11 9 15 15 C 1.52840 * 107.95558 * 122.74998 * 14 13 11 16 16 C 1.53090 * 110.57206 * 57.34758 * 15 14 13 17 17 H 1.08997 * 113.06295 * 70.99085 * 16 15 14 18 18 C 1.56025 * 106.39373 * 195.41822 * 16 15 14 19 19 C 1.54499 * 102.61462 * 78.38161 * 18 16 15 20 20 N 1.47430 * 107.15091 * 22.84473 * 19 18 16 21 21 C 1.36933 * 126.06402 * 181.60455 * 20 19 18 22 22 H 1.08001 * 120.00302 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99999 * 0.02569 * 21 20 19 24 24 N 1.31629 * 119.99703 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00306 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47243 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47654 * 119.99571 * 25 23 21 28 28 H 1.48503 * 109.47043 * 239.99705 * 25 23 21 29 29 C 1.46469 * 107.87868 * 1.62311 * 20 19 18 30 30 H 1.08998 * 108.42081 * 89.23373 * 29 20 19 31 31 C 1.46758 * 121.21154 * 180.02562 * 13 11 9 32 32 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46805 * 299.99893 * 1 2 3 34 34 H 1.09005 * 109.47355 * 59.99524 * 1 2 3 35 35 H 1.09003 * 109.47604 * 270.00461 * 3 2 1 36 36 H 1.09004 * 109.47431 * 30.00147 * 3 2 1 37 37 H 1.08999 * 109.47636 * 150.00149 * 3 2 1 38 38 H 1.09007 * 117.49848 * 145.02191 * 8 6 4 39 39 H 1.09001 * 117.52023 * 359.97438 * 8 6 4 40 40 H 1.08992 * 109.77438 * 3.12838 * 14 13 11 41 41 H 1.09005 * 109.80341 * 242.38724 * 14 13 11 42 42 H 1.08997 * 109.25551 * 297.06221 * 15 14 13 43 43 H 1.08998 * 109.22254 * 177.60764 * 15 14 13 44 44 H 1.09005 * 110.77776 * 320.10079 * 18 16 15 45 45 H 1.09000 * 110.78136 * 196.67028 * 18 16 15 46 46 H 1.09005 * 109.90138 * 263.45955 * 19 18 16 47 47 H 1.09002 * 110.04789 * 142.30945 * 19 18 16 48 48 H 0.96999 * 119.99815 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.22539 * 112.17913 * 31 13 11 50 50 H 1.08998 * 109.23009 * 352.77228 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 1 4.1160 -0.2418 -0.3336 8 6 4.3522 -2.4808 -0.3425 9 6 4.3527 -1.9637 1.0975 10 1 5.2881 -1.5626 1.4878 11 6 3.4887 -2.6876 2.0977 12 8 2.9709 -3.7432 1.8000 13 7 3.2912 -2.1621 3.3229 14 6 3.9076 -0.8845 3.7114 15 6 2.7897 0.0698 4.1305 16 6 1.9653 -0.5349 5.2699 17 1 2.5048 -0.5680 6.2164 18 6 0.6489 0.2988 5.3515 19 6 -0.1847 -0.2715 4.1824 20 7 0.3306 -1.6237 3.9001 21 6 -0.1115 -2.4653 2.9146 22 1 0.3382 -3.4399 2.7948 23 6 -1.1377 -2.0659 2.0694 24 7 -1.6861 -0.8782 2.2157 25 14 -1.7414 -3.2142 0.7255 26 1 -0.9670 -4.4805 0.7716 27 1 -3.1822 -3.5068 0.9345 28 1 -1.5545 -2.5681 -0.5985 29 6 1.3991 -1.9074 4.8609 30 1 0.9545 -2.3625 5.7459 31 6 2.4554 -2.8446 4.3176 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.3792 1.5834 -1.0277 36 1 1.6085 2.0284 0.5139 37 1 3.1500 1.1384 0.5138 38 1 5.2871 -2.4195 -0.8996 39 1 3.7271 -3.3453 -0.5663 40 1 4.4520 -0.4654 2.8653 41 1 4.5899 -1.0425 4.5467 42 1 2.1390 0.2582 3.2766 43 1 3.2273 1.0109 4.4635 44 1 0.8526 1.3589 5.2003 45 1 0.1444 0.1328 6.3034 46 1 -0.0699 0.3607 3.3019 47 1 -1.2360 -0.3266 4.4650 48 1 -2.4034 -0.5993 1.6254 49 1 3.0842 -3.1913 5.1377 50 1 1.9695 -3.7015 3.8509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085033737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:32 Heat of formation + Delta-G solvation = -8.940421 kcal Electronic energy + Delta-G solvation = -33768.328088 eV Core-core repulsion = 29797.319763 eV Total energy + Delta-G solvation = -3971.008325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69902 -40.61292 -39.44347 -36.88573 -36.41932 -36.20804 -34.57967 -32.78315 -30.79700 -30.01477 -29.11938 -27.33854 -26.52443 -26.23232 -24.21714 -23.80795 -23.73471 -21.64544 -20.89928 -20.03631 -19.27251 -18.73102 -18.35603 -17.40468 -17.07481 -16.79728 -16.46932 -16.13693 -16.09778 -15.86779 -15.59333 -15.25340 -15.02029 -14.52552 -14.15843 -14.06039 -13.93703 -13.76526 -13.61947 -13.49639 -13.29679 -13.18592 -13.07616 -12.95833 -12.77383 -12.71059 -12.52269 -12.24450 -12.09902 -12.01712 -11.57927 -11.53687 -11.44690 -11.33822 -11.20265 -11.06395 -10.71350 -10.52102 -10.43149 -9.40260 -9.34922 -8.61536 -7.72556 -4.96578 1.27007 1.32903 1.45940 1.49165 1.96968 2.16877 2.30604 2.56118 3.05579 3.48519 3.51874 3.65527 3.75107 3.82391 3.89427 3.96429 4.01853 4.17737 4.24392 4.37396 4.42195 4.47661 4.50721 4.57584 4.65741 4.68851 4.72711 4.75603 4.80155 4.85499 4.91169 4.94209 4.96122 4.97262 5.07792 5.18623 5.21197 5.22828 5.37902 5.43835 5.64765 5.72806 5.74042 5.80053 5.83126 5.94094 6.34086 6.66512 6.71702 7.31314 7.49346 7.53935 7.95588 8.56029 9.36829 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009177 B = 0.008960 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.263770 B = 3124.303731 C = 4205.557632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.614 5.614 3 C 0.079 3.921 4 C 0.511 3.489 5 O -0.557 6.557 6 C -0.158 4.158 7 H 0.177 0.823 8 C -0.120 4.120 9 C -0.151 4.151 10 H 0.183 0.817 11 C 0.529 3.471 12 O -0.578 6.578 13 N -0.595 5.595 14 C 0.108 3.892 15 C -0.115 4.115 16 C -0.084 4.084 17 H 0.117 0.883 18 C -0.130 4.130 19 C 0.192 3.808 20 N -0.597 5.597 21 C -0.172 4.172 22 H 0.037 0.963 23 C -0.009 4.009 24 N -0.925 5.925 25 Si 0.928 3.072 26 H -0.314 1.314 27 H -0.305 1.305 28 H -0.296 1.296 29 C 0.142 3.858 30 H 0.015 0.985 31 C 0.121 3.879 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.159 0.841 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.038 0.962 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.017 0.983 47 H -0.004 1.004 48 H 0.239 0.761 49 H 0.085 0.915 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.314 12.005 2.223 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.347 5.347 3 C -0.063 4.063 4 C 0.299 3.701 5 O -0.434 6.434 6 C -0.179 4.179 7 H 0.195 0.805 8 C -0.157 4.157 9 C -0.172 4.172 10 H 0.200 0.800 11 C 0.318 3.682 12 O -0.457 6.457 13 N -0.327 5.327 14 C -0.014 4.014 15 C -0.154 4.154 16 C -0.103 4.103 17 H 0.135 0.865 18 C -0.168 4.168 19 C 0.067 3.933 20 N -0.322 5.322 21 C -0.302 4.302 22 H 0.055 0.945 23 C -0.203 4.203 24 N -0.577 5.577 25 Si 0.765 3.235 26 H -0.242 1.242 27 H -0.234 1.234 28 H -0.224 1.224 29 C 0.035 3.965 30 H 0.032 0.968 31 C -0.003 4.003 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.177 0.823 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.056 0.944 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.015 0.985 48 H 0.049 0.951 49 H 0.103 0.897 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.535 10.893 1.911 21.583 hybrid contribution -1.866 -1.348 -1.108 2.555 sum 16.668 9.545 0.802 19.224 Atomic orbital electron populations 1.21796 0.80015 1.03020 1.00164 1.47635 1.06558 1.07097 1.73459 1.21978 0.97608 0.83884 1.02798 1.20402 0.90033 0.83356 0.76273 1.90793 1.70607 1.32735 1.49290 1.22473 0.90152 1.00465 1.04854 0.80538 1.23063 1.02711 0.94839 0.95095 1.22370 1.01307 1.03520 0.89970 0.79975 1.20153 0.80661 0.85053 0.82359 1.90692 1.50987 1.26116 1.77866 1.47829 1.48532 1.23765 1.12589 1.21997 0.95148 0.81948 1.02273 1.21768 0.96853 0.99054 0.97676 1.22403 0.95623 0.93066 0.99223 0.86542 1.23030 0.96211 0.99648 0.97932 1.20936 0.93666 0.84780 0.93884 1.44351 1.38228 1.14947 1.34687 1.18525 1.11365 0.95032 1.05241 0.94495 1.24390 0.99775 0.96915 0.99178 1.70052 1.28673 1.18368 1.40582 0.85896 0.75460 0.79365 0.82811 1.24227 1.23386 1.22395 1.20976 0.88605 0.95707 0.91229 0.96758 1.21129 0.92567 0.95499 0.91154 0.92582 0.91385 0.93826 0.90922 0.91176 0.88729 0.82337 0.91504 0.87721 0.88342 0.94352 0.87897 0.89821 0.92097 0.96499 0.98543 0.95064 0.89657 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.16 9.56 127.77 1.22 5.39 16 2 N -0.61 -22.46 3.27 -871.89 -2.85 -25.32 16 3 C 0.08 1.74 10.03 127.77 1.28 3.02 16 4 C 0.51 20.56 6.82 87.66 0.60 21.16 16 5 O -0.56 -29.98 13.40 10.33 0.14 -29.85 16 6 C -0.16 -4.15 5.21 -11.54 -0.06 -4.21 16 7 H 0.18 2.64 6.57 -2.39 -0.02 2.63 16 8 C -0.12 -3.15 9.55 30.59 0.29 -2.86 16 9 C -0.15 -3.88 4.71 -11.54 -0.05 -3.94 16 10 H 0.18 2.56 7.30 -2.39 -0.02 2.54 16 11 C 0.53 20.47 6.18 87.66 0.54 21.02 16 12 O -0.58 -30.07 14.82 10.31 0.15 -29.91 16 13 N -0.59 -20.05 2.96 -823.22 -2.44 -22.49 16 14 C 0.11 2.28 6.34 86.22 0.55 2.83 16 15 C -0.12 -2.81 5.04 30.57 0.15 -2.65 16 16 C -0.08 -2.35 3.68 -9.38 -0.03 -2.38 16 17 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 18 C -0.13 -4.19 6.33 32.15 0.20 -3.99 16 19 C 0.19 8.90 4.62 86.71 0.40 9.30 16 20 N -0.60 -29.91 3.20 -674.03 -2.15 -32.06 16 21 C -0.17 -10.27 9.70 84.03 0.81 -9.45 16 22 H 0.04 2.50 6.51 -2.91 -0.02 2.48 16 23 C -0.01 -0.56 4.22 84.86 0.36 -0.20 16 24 N -0.92 -53.94 8.17 21.65 0.18 -53.76 16 25 Si 0.93 55.37 27.06 68.60 1.86 57.23 16 26 H -0.31 -20.35 7.11 99.48 0.71 -19.64 16 27 H -0.30 -17.71 7.11 99.48 0.71 -17.01 16 28 H -0.30 -17.69 6.55 99.48 0.65 -17.04 16 29 C 0.14 5.59 2.97 44.78 0.13 5.73 16 30 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 31 C 0.12 4.66 5.69 85.78 0.49 5.15 16 32 H 0.06 3.04 2.76 -2.39 -0.01 3.03 16 33 H 0.07 3.26 6.78 -2.39 -0.02 3.25 16 34 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.53 8.07 -2.38 -0.02 1.52 16 37 H 0.09 1.51 6.37 -2.39 -0.02 1.49 16 38 H 0.16 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.07 2.53 7.31 -2.39 -0.02 2.51 16 40 H 0.10 1.62 5.91 -2.39 -0.01 1.60 16 41 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.04 1.29 6.85 -2.39 -0.02 1.28 16 43 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 2.28 7.97 -2.38 -0.02 2.27 16 45 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.02 0.87 7.04 -2.38 -0.02 0.85 16 47 H 0.00 -0.20 7.56 -2.39 -0.02 -0.22 16 48 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 49 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 50 H 0.04 1.85 5.54 -2.39 -0.01 1.84 16 Total: -1.00 -92.51 368.44 2.66 -89.86 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 0.90 Total: 2.39 kcal Atomic # 6 Polarization: 37.03 SS G_CDS: 6.88 Total: 43.92 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -7.27 Total: -133.63 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: 0.29 Total: -59.76 kcal Atomic # 14 Polarization: 55.37 SS G_CDS: 1.86 Total: 57.23 kcal Total: -92.51 2.66 -89.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085033737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.915 kcal (2) G-P(sol) polarization free energy of solvation -92.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds