Wall clock time and date at job start Tue Mar 31 2020 18:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99853 * 2 1 4 4 C 1.52996 * 109.46925 * 275.34520 * 3 2 1 5 5 H 1.08995 * 112.74453 * 44.13224 * 4 3 2 6 6 C 1.53500 * 113.46878 * 273.31078 * 4 3 2 7 7 C 1.53498 * 83.34646 * 219.15630 * 6 4 3 8 8 N 1.47067 * 87.98498 * 26.06600 * 7 6 4 9 9 C 1.36938 * 136.05678 * 152.84522 * 8 7 6 10 10 H 1.08004 * 119.99774 * 186.48246 * 9 8 7 11 11 C 1.38813 * 120.00018 * 6.48899 * 9 8 7 12 12 N 1.31623 * 119.99919 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99883 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47333 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.46950 * 120.00232 * 13 11 9 16 16 H 1.48499 * 109.47047 * 239.99718 * 13 11 9 17 17 C 1.34774 * 119.99989 * 180.02562 * 2 1 3 18 18 O 1.21290 * 119.99908 * 184.77397 * 17 2 1 19 19 C 1.50696 * 120.00271 * 4.77655 * 17 2 1 20 20 H 1.08994 * 109.19790 * 307.59818 * 19 17 2 21 21 C 1.53290 * 109.20318 * 66.94188 * 19 17 2 22 22 N 1.46794 * 108.49845 * 180.46978 * 21 19 17 23 23 C 1.49420 * 112.10030 * 193.75916 * 22 21 19 24 24 C 1.57027 * 99.32177 * 113.45760 * 23 22 21 25 25 C 1.56485 * 107.13103 * 40.32216 * 24 23 22 26 26 C 1.49505 * 107.61231 * 302.19889 * 22 21 19 27 27 C 1.54372 * 104.42860 * 288.57080 * 26 22 21 28 28 C 1.50168 * 114.92764 * 57.53193 * 26 22 21 29 29 O 1.42800 * 109.20670 * 188.23952 * 19 17 2 30 30 H 1.08999 * 109.46945 * 206.77520 * 1 2 3 31 31 H 1.08999 * 109.47130 * 326.77241 * 1 2 3 32 32 H 1.08995 * 109.47167 * 86.77385 * 1 2 3 33 33 H 1.08996 * 109.46981 * 35.34334 * 3 2 1 34 34 H 1.08999 * 109.46964 * 155.34713 * 3 2 1 35 35 H 1.09008 * 114.20408 * 332.74133 * 6 4 3 36 36 H 1.09000 * 114.20585 * 105.56554 * 6 4 3 37 37 H 1.09001 * 113.46665 * 271.28754 * 7 6 4 38 38 H 1.08995 * 113.52487 * 140.85440 * 7 6 4 39 39 H 0.96998 * 119.99762 * 179.97438 * 12 11 9 40 40 H 1.08997 * 109.63569 * 300.18005 * 21 19 17 41 41 H 1.09005 * 109.63109 * 60.77814 * 21 19 17 42 42 H 1.09003 * 111.43250 * 230.97906 * 23 22 21 43 43 H 1.08997 * 111.43005 * 355.88126 * 23 22 21 44 44 H 1.08997 * 118.35303 * 180.89014 * 24 23 22 45 45 H 1.08993 * 114.70045 * 55.82231 * 25 24 23 46 46 H 1.08997 * 114.69765 * 190.06949 * 25 24 23 47 47 H 1.08998 * 114.72078 * 179.97438 * 27 26 22 48 48 H 1.08997 * 114.76395 * 45.66062 * 27 26 22 49 49 H 1.09001 * 109.69915 * 66.61023 * 28 26 22 50 50 H 1.08998 * 109.70401 * 187.17522 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3361 1.7776 -1.4362 5 1 1.4112 1.6883 -2.0060 6 6 3.5630 1.2160 -2.1680 7 6 3.6542 2.6397 -2.7346 8 7 2.9548 3.1086 -1.5289 9 6 2.9031 4.2722 -0.8088 10 1 2.3628 4.3054 0.1258 11 6 3.5451 5.4092 -1.2801 12 7 4.2039 5.3687 -2.4188 13 14 3.4739 6.9967 -0.2981 14 1 2.6761 6.7804 0.9356 15 1 4.8510 7.4137 0.0691 16 1 2.8376 8.0582 -1.1187 17 6 2.1389 -1.1672 -0.0005 18 8 3.3486 -1.1690 0.0869 19 6 1.3894 -2.4700 -0.1098 20 1 0.6094 -2.4996 0.6509 21 6 0.7445 -2.5658 -1.4971 22 7 0.0100 -3.8339 -1.5827 23 6 -0.3725 -4.1683 -2.9878 24 6 0.5197 -5.4433 -3.1978 25 6 0.4643 -6.2685 -1.8693 26 6 0.9828 -4.9387 -1.3215 27 6 1.8699 -4.9767 -2.5844 28 6 1.6956 -4.8557 -0.0024 29 8 2.2956 -3.5527 0.1040 30 1 -0.3633 -0.9175 0.4630 31 1 -0.3633 0.8596 0.5631 32 1 -0.3633 0.0578 -1.0260 33 1 1.6532 2.0025 0.5945 34 1 3.1880 1.1165 0.4287 35 1 4.3889 0.9428 -1.5111 36 1 3.3299 0.4533 -2.9110 37 1 3.0808 2.7797 -3.6510 38 1 4.6757 3.0110 -2.8159 39 1 4.6521 6.1633 -2.7483 40 1 0.0556 -1.7332 -1.6391 41 1 1.5190 -2.5390 -2.2636 42 1 -1.4332 -4.4074 -3.0658 43 1 -0.0960 -3.3700 -3.6765 44 1 0.4866 -5.9447 -4.1650 45 1 -0.5400 -6.5359 -1.5408 46 1 1.1762 -7.0921 -1.8148 47 1 2.6509 -5.7368 -2.5701 48 1 2.2147 -4.0020 -2.9296 49 1 0.9834 -5.0005 0.8099 50 1 2.4692 -5.6221 0.0462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085731451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:30 Heat of formation + Delta-G solvation = 76.936955 kcal Electronic energy + Delta-G solvation = -30729.950226 eV Core-core repulsion = 26762.665823 eV Total energy + Delta-G solvation = -3967.284403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.50340 -39.96290 -38.14150 -37.26979 -35.33366 -33.92729 -32.18109 -30.27711 -29.70058 -28.11662 -27.84966 -26.47300 -25.82553 -24.80459 -23.71131 -23.34376 -22.08086 -20.72969 -19.53604 -19.16563 -18.92354 -17.36292 -17.06754 -16.60775 -16.16790 -16.01274 -15.71195 -15.50602 -14.85853 -14.72820 -14.52938 -14.17447 -13.92637 -13.59652 -13.55383 -13.33736 -12.98019 -12.72817 -12.69123 -12.63466 -12.18629 -12.10566 -11.97464 -11.75141 -11.46713 -11.35295 -11.08147 -11.06841 -10.98013 -10.83977 -10.74494 -10.56017 -10.36947 -9.84029 -9.81300 -9.76871 -9.59921 -9.32910 -8.96122 -8.77697 -8.29594 -6.84182 -5.75130 -3.07205 2.66337 2.76015 3.30399 3.39945 3.44502 3.47642 3.65371 3.85471 3.97303 4.14631 4.23484 4.47583 4.51841 4.57594 4.68629 4.75038 4.93752 5.01221 5.13832 5.18411 5.26331 5.27914 5.30106 5.32980 5.35022 5.40768 5.43764 5.47901 5.50302 5.55437 5.61097 5.68101 5.70691 5.76389 5.90319 6.01627 6.09284 6.12190 6.41600 6.44526 6.51397 6.65683 6.74670 6.78997 6.89201 7.28363 7.46807 7.55308 7.61003 8.00123 8.33358 9.05357 9.72491 10.68211 11.43149 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024652 B = 0.002675 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.521369 B =10463.026918 C =10719.364476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.115 3.885 4 C 0.131 3.869 5 H 0.040 0.960 6 C -0.160 4.160 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.218 4.218 10 H 0.081 0.919 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.911 3.089 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.519 3.481 18 O -0.509 6.509 19 C 0.081 3.919 20 H 0.087 0.913 21 C 0.007 3.993 22 N -0.470 5.470 23 C 0.034 3.966 24 C -0.144 4.144 25 C -0.107 4.107 26 C 0.007 3.993 27 C -0.174 4.174 28 C 0.093 3.907 29 O -0.351 6.351 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.024 0.976 38 H 0.064 0.936 39 H 0.253 0.747 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 -24.532 0.769 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.008 4.008 4 C 0.022 3.978 5 H 0.057 0.943 6 C -0.198 4.198 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.345 4.345 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.741 3.259 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.304 3.696 18 O -0.383 6.383 19 C 0.019 3.981 20 H 0.105 0.895 21 C -0.122 4.122 22 N -0.194 5.194 23 C -0.094 4.094 24 C -0.163 4.163 25 C -0.144 4.144 26 C -0.083 4.083 27 C -0.212 4.212 28 C 0.016 3.984 29 O -0.269 6.269 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.113 0.887 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.287 -24.022 1.361 26.577 hybrid contribution 0.137 1.044 -0.397 1.125 sum -11.151 -22.979 0.964 25.559 Atomic orbital electron populations 1.21931 0.79939 1.03100 1.02020 1.47782 1.06771 1.06207 1.73531 1.21957 0.97726 0.81877 0.99204 1.22421 0.95078 0.87232 0.93024 0.94275 1.23675 0.98801 0.97523 0.99831 1.21945 0.97979 0.87554 0.89328 1.45634 1.50186 1.08364 1.28428 1.18927 1.29047 0.85691 1.00873 0.90168 1.24826 1.00757 0.97666 0.97148 1.69864 1.37681 1.28332 1.20558 0.86070 0.77365 0.83565 0.78902 1.20435 1.21690 1.21781 1.19904 0.87939 0.84281 0.77493 1.90736 1.13602 1.86620 1.47337 1.21871 0.91824 0.87245 0.97191 0.89518 1.23130 0.98249 0.93907 0.96917 1.67227 1.29785 1.00551 1.21800 1.23852 1.00342 0.95836 0.89330 1.24887 0.96298 0.96859 0.98239 1.23280 1.02002 0.93991 0.95170 1.23458 0.94208 0.94669 0.95954 1.24543 0.96475 1.02556 0.97625 1.21847 0.97166 0.85344 0.94058 1.88226 1.34225 1.12772 1.91643 0.91146 0.90610 0.92368 0.90776 0.89159 0.90025 0.93419 0.95797 0.91788 0.93709 0.88041 0.92048 0.88839 0.90773 0.87276 0.90469 0.88042 0.88702 0.90827 0.91893 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.07 59.85 0.54 1.31 16 2 N -0.61 -8.99 2.87 -181.57 -0.52 -9.51 16 3 C 0.12 2.12 5.49 -4.04 -0.02 2.10 16 4 C 0.13 2.72 4.31 -72.38 -0.31 2.41 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.16 -3.36 8.02 -26.21 -0.21 -3.57 16 7 C 0.16 3.90 7.26 -8.49 -0.06 3.84 16 8 N -0.60 -15.58 3.64 -176.97 -0.64 -16.22 16 9 C -0.22 -6.10 10.55 -15.06 -0.16 -6.26 16 10 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.77 11.68 55.49 0.65 -27.12 16 13 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 C 0.52 8.30 7.03 -10.99 -0.08 8.23 16 18 O -0.51 -10.39 15.99 -14.38 -0.23 -10.62 16 19 C 0.08 1.01 2.35 -27.73 -0.07 0.95 16 20 H 0.09 0.95 6.82 -51.93 -0.35 0.59 16 21 C 0.01 0.07 4.53 -3.73 -0.02 0.06 16 22 N -0.47 -4.44 6.03 -227.97 -1.37 -5.81 16 23 C 0.03 0.27 7.02 -0.24 0.00 0.26 16 24 C -0.14 -1.01 6.40 -98.00 -0.63 -1.64 16 25 C -0.11 -0.69 7.81 -30.34 -0.24 -0.93 16 26 C 0.01 0.06 1.59 -143.65 -0.23 -0.16 16 27 C -0.17 -1.54 7.01 -30.13 -0.21 -1.75 16 28 C 0.09 0.89 6.72 35.75 0.24 1.13 16 29 O -0.35 -4.83 10.00 -55.16 -0.55 -5.38 16 30 H 0.07 0.58 6.09 -51.93 -0.32 0.27 16 31 H 0.08 0.75 7.98 -51.93 -0.41 0.33 16 32 H 0.06 0.56 7.15 -51.93 -0.37 0.19 16 33 H 0.07 1.34 7.99 -51.93 -0.42 0.93 16 34 H 0.09 1.88 6.95 -51.93 -0.36 1.52 16 35 H 0.08 1.82 7.94 -51.92 -0.41 1.41 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.74 7.42 -51.93 -0.39 1.36 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.10 1.01 5.67 -51.93 -0.29 0.71 16 41 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.59 7.73 -51.93 -0.40 0.19 16 44 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.50 7.84 -51.93 -0.41 0.10 16 47 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 48 H 0.07 0.81 6.08 -51.93 -0.32 0.50 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -34.37 382.50 -11.57 -45.94 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.09 Total: 0.03 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.54 Total: 5.68 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -1.89 Total: -58.67 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.78 Total: -16.00 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.37 -11.57 -45.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085731451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.878 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds