Wall clock time and date at job start Tue Mar 31 2020 18:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99853 * 2 1 4 4 C 1.52996 * 109.46925 * 275.34520 * 3 2 1 5 5 H 1.08995 * 112.74453 * 44.13224 * 4 3 2 6 6 C 1.53500 * 113.46878 * 273.31078 * 4 3 2 7 7 C 1.53498 * 83.34646 * 219.15630 * 6 4 3 8 8 N 1.47067 * 87.98498 * 26.06600 * 7 6 4 9 9 C 1.36938 * 136.05678 * 152.84522 * 8 7 6 10 10 H 1.08004 * 119.99774 * 186.48246 * 9 8 7 11 11 C 1.38813 * 120.00018 * 6.48899 * 9 8 7 12 12 N 1.31623 * 119.99919 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99883 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47333 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.46950 * 120.00232 * 13 11 9 16 16 H 1.48499 * 109.47047 * 239.99718 * 13 11 9 17 17 C 1.34774 * 119.99989 * 180.02562 * 2 1 3 18 18 O 1.21290 * 119.99908 * 184.77397 * 17 2 1 19 19 C 1.50696 * 120.00271 * 4.77655 * 17 2 1 20 20 H 1.08994 * 109.19790 * 307.59818 * 19 17 2 21 21 C 1.53290 * 109.20318 * 66.94188 * 19 17 2 22 22 N 1.46794 * 108.49845 * 180.46978 * 21 19 17 23 23 C 1.49420 * 112.10030 * 193.75916 * 22 21 19 24 24 C 1.57027 * 99.32177 * 113.45760 * 23 22 21 25 25 C 1.56485 * 107.13103 * 40.32216 * 24 23 22 26 26 C 1.49505 * 107.61231 * 302.19889 * 22 21 19 27 27 C 1.54372 * 104.42860 * 288.57080 * 26 22 21 28 28 C 1.50168 * 114.92764 * 57.53193 * 26 22 21 29 29 O 1.42800 * 109.20670 * 188.23952 * 19 17 2 30 30 H 1.08999 * 109.46945 * 206.77520 * 1 2 3 31 31 H 1.08999 * 109.47130 * 326.77241 * 1 2 3 32 32 H 1.08995 * 109.47167 * 86.77385 * 1 2 3 33 33 H 1.08996 * 109.46981 * 35.34334 * 3 2 1 34 34 H 1.08999 * 109.46964 * 155.34713 * 3 2 1 35 35 H 1.09008 * 114.20408 * 332.74133 * 6 4 3 36 36 H 1.09000 * 114.20585 * 105.56554 * 6 4 3 37 37 H 1.09001 * 113.46665 * 271.28754 * 7 6 4 38 38 H 1.08995 * 113.52487 * 140.85440 * 7 6 4 39 39 H 0.96998 * 119.99762 * 179.97438 * 12 11 9 40 40 H 1.08997 * 109.63569 * 300.18005 * 21 19 17 41 41 H 1.09005 * 109.63109 * 60.77814 * 21 19 17 42 42 H 1.09003 * 111.43250 * 230.97906 * 23 22 21 43 43 H 1.08997 * 111.43005 * 355.88126 * 23 22 21 44 44 H 1.08997 * 118.35303 * 180.89014 * 24 23 22 45 45 H 1.08993 * 114.70045 * 55.82231 * 25 24 23 46 46 H 1.08997 * 114.69765 * 190.06949 * 25 24 23 47 47 H 1.08998 * 114.72078 * 179.97438 * 27 26 22 48 48 H 1.08997 * 114.76395 * 45.66062 * 27 26 22 49 49 H 1.09001 * 109.69915 * 66.61023 * 28 26 22 50 50 H 1.08998 * 109.70401 * 187.17522 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3361 1.7776 -1.4362 5 1 1.4112 1.6883 -2.0060 6 6 3.5630 1.2160 -2.1680 7 6 3.6542 2.6397 -2.7346 8 7 2.9548 3.1086 -1.5289 9 6 2.9031 4.2722 -0.8088 10 1 2.3628 4.3054 0.1258 11 6 3.5451 5.4092 -1.2801 12 7 4.2039 5.3687 -2.4188 13 14 3.4739 6.9967 -0.2981 14 1 2.6761 6.7804 0.9356 15 1 4.8510 7.4137 0.0691 16 1 2.8376 8.0582 -1.1187 17 6 2.1389 -1.1672 -0.0005 18 8 3.3486 -1.1690 0.0869 19 6 1.3894 -2.4700 -0.1098 20 1 0.6094 -2.4996 0.6509 21 6 0.7445 -2.5658 -1.4971 22 7 0.0100 -3.8339 -1.5827 23 6 -0.3725 -4.1683 -2.9878 24 6 0.5197 -5.4433 -3.1978 25 6 0.4643 -6.2685 -1.8693 26 6 0.9828 -4.9387 -1.3215 27 6 1.8699 -4.9767 -2.5844 28 6 1.6956 -4.8557 -0.0024 29 8 2.2956 -3.5527 0.1040 30 1 -0.3633 -0.9175 0.4630 31 1 -0.3633 0.8596 0.5631 32 1 -0.3633 0.0578 -1.0260 33 1 1.6532 2.0025 0.5945 34 1 3.1880 1.1165 0.4287 35 1 4.3889 0.9428 -1.5111 36 1 3.3299 0.4533 -2.9110 37 1 3.0808 2.7797 -3.6510 38 1 4.6757 3.0110 -2.8159 39 1 4.6521 6.1633 -2.7483 40 1 0.0556 -1.7332 -1.6391 41 1 1.5190 -2.5390 -2.2636 42 1 -1.4332 -4.4074 -3.0658 43 1 -0.0960 -3.3700 -3.6765 44 1 0.4866 -5.9447 -4.1650 45 1 -0.5400 -6.5359 -1.5408 46 1 1.1762 -7.0921 -1.8148 47 1 2.6509 -5.7368 -2.5701 48 1 2.2147 -4.0020 -2.9296 49 1 0.9834 -5.0005 0.8099 50 1 2.4692 -5.6221 0.0462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085731451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:30 Heat of formation + Delta-G solvation = 52.817710 kcal Electronic energy + Delta-G solvation = -30730.996115 eV Core-core repulsion = 26762.665823 eV Total energy + Delta-G solvation = -3968.330292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.17634 -41.22443 -39.80011 -38.34757 -36.62657 -34.74745 -34.26303 -31.33785 -30.41386 -29.94625 -29.29768 -27.53607 -26.48612 -25.61310 -25.42152 -24.63034 -23.58898 -21.34939 -21.08650 -20.54042 -19.82316 -18.79132 -18.31023 -17.93380 -17.23152 -16.95205 -16.83796 -16.62987 -16.43971 -15.85614 -15.74849 -15.42367 -15.27991 -14.96354 -14.55669 -14.23534 -14.12263 -13.83300 -13.74388 -13.67858 -13.47865 -13.41679 -13.12736 -13.01826 -12.76289 -12.68979 -12.56179 -12.36471 -12.22880 -12.02824 -11.87253 -11.83935 -11.67947 -11.64842 -11.22192 -11.15198 -10.88999 -10.73192 -10.62328 -9.70052 -9.67005 -8.92728 -7.91753 -5.25367 1.43970 1.46031 1.46980 1.56716 1.64988 2.45903 2.61061 2.75261 3.24947 3.27988 3.32122 3.41312 3.47749 3.50031 3.64983 3.77256 3.82375 3.93997 4.00860 4.16313 4.21393 4.28580 4.31186 4.39616 4.40934 4.51356 4.54825 4.62704 4.64124 4.69277 4.73064 4.79894 4.81510 4.85971 4.90397 4.93907 4.95478 4.97290 5.04975 5.09718 5.15825 5.17542 5.40205 5.46411 5.49210 5.66180 5.72175 5.90033 5.94767 6.35783 6.88566 7.10137 7.59044 8.60094 9.27511 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024652 B = 0.002675 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.521369 B =10463.026918 C =10719.364476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.602 5.602 3 C 0.129 3.871 4 C 0.140 3.860 5 H 0.058 0.942 6 C -0.137 4.137 7 C 0.155 3.845 8 N -0.627 5.627 9 C -0.222 4.222 10 H 0.092 0.908 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.980 3.020 14 H -0.260 1.260 15 H -0.296 1.296 16 H -0.292 1.292 17 C 0.514 3.486 18 O -0.563 6.563 19 C 0.090 3.910 20 H 0.109 0.891 21 C 0.015 3.985 22 N -0.471 5.471 23 C 0.030 3.970 24 C -0.135 4.135 25 C -0.091 4.091 26 C -0.002 4.002 27 C -0.184 4.184 28 C 0.087 3.913 29 O -0.385 6.385 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.029 0.971 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.039 0.961 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.126 0.874 45 H 0.085 0.915 46 H 0.119 0.881 47 H 0.102 0.898 48 H 0.044 0.956 49 H 0.076 0.924 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 -26.587 1.501 30.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.336 5.336 3 C 0.005 3.995 4 C 0.033 3.967 5 H 0.076 0.924 6 C -0.176 4.176 7 C 0.029 3.971 8 N -0.354 5.354 9 C -0.350 4.350 10 H 0.110 0.890 11 C -0.264 4.264 12 N -0.606 5.606 13 Si 0.808 3.192 14 H -0.183 1.183 15 H -0.223 1.223 16 H -0.219 1.219 17 C 0.301 3.699 18 O -0.441 6.441 19 C 0.029 3.971 20 H 0.127 0.873 21 C -0.114 4.114 22 N -0.194 5.194 23 C -0.097 4.097 24 C -0.154 4.154 25 C -0.128 4.128 26 C -0.092 4.092 27 C -0.222 4.222 28 C 0.011 3.989 29 O -0.304 6.304 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.131 0.869 41 H 0.057 0.943 42 H 0.127 0.873 43 H 0.087 0.913 44 H 0.143 0.857 45 H 0.104 0.896 46 H 0.137 0.863 47 H 0.121 0.879 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.350 -26.122 2.109 29.879 hybrid contribution 1.068 1.583 -0.637 2.013 sum -13.283 -24.539 1.471 27.942 Atomic orbital electron populations 1.22259 0.76759 1.05073 1.03486 1.47780 1.08536 1.04586 1.72718 1.21495 0.97056 0.83739 0.97207 1.22486 0.95136 0.84393 0.94721 0.92426 1.23414 0.98544 0.95962 0.99638 1.21893 0.95976 0.89742 0.89469 1.45934 1.51327 1.09520 1.28592 1.19378 1.27954 0.86344 1.01333 0.89013 1.25720 1.01089 1.01163 0.98463 1.70058 1.39202 1.28814 1.22531 0.84979 0.77001 0.79121 0.78061 1.18348 1.22322 1.21898 1.20628 0.87544 0.85613 0.76126 1.90710 1.16088 1.87468 1.49827 1.21799 0.91322 0.85200 0.98816 0.87324 1.23016 0.97848 0.95435 0.95071 1.67260 1.29321 0.99953 1.22901 1.23959 1.01368 0.96133 0.88270 1.24922 0.94369 0.96666 0.99417 1.23302 1.02779 0.93052 0.93668 1.23622 0.94295 0.95932 0.95326 1.24619 0.97705 1.01402 0.98481 1.22104 0.97967 0.83778 0.95047 1.88180 1.35824 1.14404 1.91961 0.88459 0.89585 0.90973 0.90086 0.92179 0.91717 0.90883 0.96055 0.95296 0.94375 0.86885 0.94290 0.87253 0.91334 0.85657 0.89645 0.86254 0.87914 0.93756 0.90631 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 9.07 127.77 1.16 2.33 16 2 N -0.60 -17.03 2.87 -846.76 -2.43 -19.46 16 3 C 0.13 4.71 5.49 86.38 0.47 5.18 16 4 C 0.14 5.76 4.31 41.80 0.18 5.94 16 5 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 6 C -0.14 -5.86 8.02 30.93 0.25 -5.62 16 7 C 0.16 7.94 7.26 83.19 0.60 8.54 16 8 N -0.63 -33.03 3.64 -713.80 -2.60 -35.63 16 9 C -0.22 -12.50 10.55 84.03 0.89 -11.62 16 10 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 11 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 12 N -0.96 -59.76 11.68 21.65 0.25 -59.50 16 13 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 14 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 16 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 17 C 0.51 16.25 7.03 87.66 0.62 16.87 16 18 O -0.56 -23.69 15.99 16.00 0.26 -23.43 16 19 C 0.09 2.14 2.35 29.94 0.07 2.22 16 20 H 0.11 2.08 6.82 -2.39 -0.02 2.06 16 21 C 0.02 0.31 4.53 86.42 0.39 0.70 16 22 N -0.47 -7.74 6.03 -875.15 -5.27 -13.01 16 23 C 0.03 0.39 7.02 87.23 0.61 1.01 16 24 C -0.14 -1.54 6.40 -15.57 -0.10 -1.64 16 25 C -0.09 -0.86 7.81 28.25 0.22 -0.64 16 26 C 0.00 -0.02 1.59 -5.72 -0.01 -0.03 16 27 C -0.18 -3.02 7.01 28.39 0.20 -2.82 16 28 C 0.09 1.51 6.72 71.07 0.48 1.99 16 29 O -0.39 -10.35 10.00 -129.93 -1.30 -11.65 16 30 H 0.10 1.24 6.09 -2.39 -0.01 1.22 16 31 H 0.09 1.41 7.98 -2.39 -0.02 1.39 16 32 H 0.07 1.13 7.15 -2.39 -0.02 1.12 16 33 H 0.08 2.84 7.99 -2.39 -0.02 2.82 16 34 H 0.06 2.58 6.95 -2.39 -0.02 2.56 16 35 H 0.06 3.00 7.94 -2.38 -0.02 2.98 16 36 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.03 1.65 7.42 -2.39 -0.02 1.64 16 39 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.11 1.95 5.67 -2.39 -0.01 1.94 16 41 H 0.04 0.97 5.97 -2.38 -0.01 0.96 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 0.98 7.73 -2.39 -0.02 0.97 16 44 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.12 0.73 7.84 -2.39 -0.02 0.71 16 47 H 0.10 1.47 7.85 -2.39 -0.02 1.45 16 48 H 0.04 0.99 6.08 -2.39 -0.01 0.98 16 49 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -77.69 382.50 -1.64 -79.33 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.93 Total: 16.26 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 6.50 Total: 18.71 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -10.05 Total: -127.60 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.04 Total: -35.08 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.69 -1.64 -79.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085731451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.149 kcal (2) G-P(sol) polarization free energy of solvation -77.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds