Wall clock time and date at job start Tue Mar 31 2020 18:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99786 * 2 1 4 4 C 1.53002 * 109.47153 * 264.09684 * 3 2 1 5 5 H 1.08998 * 112.96067 * 295.46932 * 4 3 2 6 6 C 1.53946 * 113.76605 * 67.14198 * 4 3 2 7 7 C 1.53948 * 86.28958 * 137.91105 * 6 4 3 8 8 N 1.47581 * 113.77204 * 163.78540 * 4 3 2 9 9 C 1.36938 * 134.48902 * 41.06857 * 8 4 3 10 10 H 1.07997 * 120.00002 * 4.23830 * 9 8 4 11 11 C 1.38810 * 119.99654 * 184.24284 * 9 8 4 12 12 N 1.31622 * 120.00338 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99738 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47254 * 59.99948 * 13 11 9 15 15 H 1.48501 * 109.46877 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47017 * 299.99429 * 13 11 9 17 17 C 1.34775 * 120.00342 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99821 * 185.27749 * 17 2 1 19 19 C 1.50696 * 119.99779 * 5.28208 * 17 2 1 20 20 H 1.09003 * 109.20026 * 311.27300 * 19 17 2 21 21 C 1.53285 * 109.20985 * 70.62844 * 19 17 2 22 22 N 1.46787 * 108.50824 * 180.46753 * 21 19 17 23 23 C 1.49414 * 112.09928 * 193.76996 * 22 21 19 24 24 C 1.57026 * 99.32703 * 113.45333 * 23 22 21 25 25 C 1.56487 * 107.12934 * 40.31759 * 24 23 22 26 26 C 1.49508 * 107.60874 * 302.20250 * 22 21 19 27 27 C 1.54378 * 104.42722 * 288.57211 * 26 22 21 28 28 C 1.50172 * 114.92897 * 57.52950 * 26 22 21 29 29 O 1.42800 * 109.20375 * 191.97210 * 19 17 2 30 30 H 1.08998 * 109.47270 * 264.57893 * 1 2 3 31 31 H 1.09003 * 109.47402 * 24.57936 * 1 2 3 32 32 H 1.08996 * 109.46918 * 144.58112 * 1 2 3 33 33 H 1.09000 * 109.46848 * 24.09208 * 3 2 1 34 34 H 1.09001 * 109.47057 * 144.09696 * 3 2 1 35 35 H 1.09004 * 113.74045 * 252.25034 * 6 4 3 36 36 H 1.08992 * 113.74853 * 23.45769 * 6 4 3 37 37 H 1.09002 * 113.77215 * 90.68859 * 7 6 4 38 38 H 1.08998 * 113.76938 * 221.98076 * 7 6 4 39 39 H 0.96991 * 119.99953 * 180.02562 * 12 11 9 40 40 H 1.08994 * 109.62661 * 60.76056 * 21 19 17 41 41 H 1.09003 * 109.78843 * 300.27240 * 21 19 17 42 42 H 1.09004 * 111.42520 * 230.97807 * 23 22 21 43 43 H 1.09002 * 111.43428 * 355.87122 * 23 22 21 44 44 H 1.08994 * 118.35642 * 180.88290 * 24 23 22 45 45 H 1.09002 * 114.69801 * 190.07122 * 25 24 23 46 46 H 1.08999 * 114.70080 * 55.81945 * 25 24 23 47 47 H 1.08995 * 114.71908 * 45.66317 * 27 26 22 48 48 H 1.09005 * 114.71472 * 179.97438 * 27 26 22 49 49 H 1.09002 * 109.70331 * 66.60876 * 28 26 22 50 50 H 1.08990 * 109.70056 * 187.22163 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5810 1.6363 -1.4349 5 1 3.2775 0.9280 -1.8835 6 6 1.3763 1.9747 -2.3317 7 6 2.2339 3.1316 -2.8759 8 7 2.9780 3.0479 -1.6015 9 6 3.7317 3.9257 -0.8690 10 1 4.2381 3.5886 0.0233 11 6 3.8448 5.2487 -1.2734 12 7 3.2279 5.6595 -2.3612 13 14 4.8736 6.4460 -0.2746 14 1 6.2779 5.9662 -0.2202 15 1 4.8332 7.7859 -0.9135 16 1 4.3279 6.5375 1.1035 17 6 2.1390 -1.1671 0.0005 18 8 3.3479 -1.1692 0.0971 19 6 1.3903 -2.4695 -0.1190 20 1 0.5637 -2.4744 0.5915 21 6 0.8337 -2.6026 -1.5411 22 7 0.0988 -3.8696 -1.6371 23 6 -0.1959 -4.2425 -3.0536 24 6 0.7004 -5.5265 -3.1705 25 6 0.5564 -6.3131 -1.8254 26 6 1.0468 -4.9703 -1.2837 27 6 2.0117 -5.0478 -2.4863 28 6 1.6754 -4.8524 0.0751 29 8 2.2747 -3.5492 0.1833 30 1 -0.3634 -0.0971 1.0230 31 1 -0.3634 0.9345 -0.4275 32 1 -0.3633 -0.8375 -0.5956 33 1 1.5666 2.0525 0.4195 34 1 3.1000 1.1673 0.6026 35 1 1.1523 1.2080 -3.0734 36 1 0.4956 2.3014 -1.7789 37 1 2.8295 2.8642 -3.7487 38 1 1.6831 4.0632 -3.0061 39 1 3.3073 6.5839 -2.6439 40 1 1.6551 -2.6005 -2.2574 41 1 0.1607 -1.7718 -1.7532 42 1 -1.2509 -4.4794 -3.1918 43 1 0.1281 -3.4653 -3.7458 44 1 0.7257 -6.0552 -4.1233 45 1 1.2587 -7.1376 -1.7026 46 1 -0.4682 -6.5670 -1.5537 47 1 2.3828 -4.0843 -2.8357 48 1 2.7860 -5.8103 -2.4010 49 1 0.9124 -4.9711 0.8445 50 1 2.4404 -5.6196 0.1938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085731453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:37 Heat of formation + Delta-G solvation = 75.984145 kcal Electronic energy + Delta-G solvation = -30718.179805 eV Core-core repulsion = 26750.854085 eV Total energy + Delta-G solvation = -3967.325720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.51149 -39.95832 -38.04708 -37.23383 -35.27771 -33.94971 -32.12639 -30.27998 -29.70950 -28.19975 -27.82306 -26.43423 -25.81697 -24.82365 -23.70085 -23.30514 -22.23588 -20.73493 -19.59516 -19.16185 -18.81553 -17.31611 -17.06903 -16.62001 -16.22469 -16.01866 -15.74960 -15.33197 -14.87964 -14.73821 -14.67146 -14.19352 -13.95968 -13.59645 -13.53984 -13.39843 -12.97877 -12.70195 -12.60937 -12.54611 -12.34330 -12.14924 -12.03233 -11.74707 -11.41387 -11.32288 -11.08007 -11.00115 -10.97237 -10.79997 -10.68522 -10.56064 -10.46295 -9.82877 -9.80766 -9.75263 -9.63170 -9.43326 -8.96946 -8.74202 -8.34308 -6.83377 -5.71783 -3.05036 2.65192 2.74744 3.30343 3.43000 3.47157 3.48221 3.66092 3.85270 3.96520 4.14302 4.23112 4.49070 4.51825 4.55824 4.67980 4.79319 4.92384 5.00427 5.11866 5.17900 5.22950 5.27709 5.30873 5.33625 5.35252 5.39672 5.44334 5.48433 5.50870 5.54992 5.59168 5.68418 5.72103 5.77510 5.82734 5.98123 6.11961 6.18749 6.30066 6.42558 6.43804 6.56746 6.72388 6.80625 6.86914 7.28024 7.46014 7.55231 7.62616 8.03403 8.32812 9.09279 9.75689 10.65023 11.44504 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.002720 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.860001 B =10290.872187 C =10721.000595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.604 5.604 3 C 0.120 3.880 4 C 0.131 3.869 5 H 0.045 0.955 6 C -0.157 4.157 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.221 4.221 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.922 5.922 13 Si 0.910 3.090 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.517 3.483 18 O -0.514 6.514 19 C 0.082 3.918 20 H 0.087 0.913 21 C 0.005 3.995 22 N -0.469 5.469 23 C 0.034 3.966 24 C -0.144 4.144 25 C -0.107 4.107 26 C 0.007 3.993 27 C -0.174 4.174 28 C 0.093 3.907 29 O -0.352 6.352 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.253 0.747 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.095 0.905 49 H 0.063 0.937 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.030 -24.270 0.356 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.339 5.339 3 C -0.003 4.003 4 C 0.023 3.977 5 H 0.063 0.937 6 C -0.196 4.196 7 C 0.031 3.969 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.569 5.569 13 Si 0.741 3.259 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.302 3.698 18 O -0.388 6.388 19 C 0.020 3.980 20 H 0.105 0.895 21 C -0.123 4.123 22 N -0.193 5.193 23 C -0.094 4.094 24 C -0.163 4.163 25 C -0.144 4.144 26 C -0.083 4.083 27 C -0.212 4.212 28 C 0.016 3.984 29 O -0.270 6.270 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.113 0.887 49 H 0.082 0.918 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.552 -23.781 0.917 26.454 hybrid contribution 1.146 0.682 -0.275 1.362 sum -10.406 -23.099 0.642 25.343 Atomic orbital electron populations 1.22093 0.79768 1.03981 1.01829 1.47744 1.06860 1.05970 1.73352 1.21823 0.96993 0.82360 0.99123 1.22515 0.93558 0.88781 0.92884 0.93739 1.23756 0.97481 0.99369 0.98954 1.22288 0.90472 0.95902 0.88206 1.46044 1.59908 1.05157 1.21652 1.18987 1.22493 0.88779 1.04656 0.90425 1.24759 1.00799 0.96863 0.97932 1.69808 1.46649 1.16024 1.24424 0.86225 0.80063 0.80378 0.79263 1.21219 1.21613 1.21067 1.19958 0.87889 0.84372 0.77537 1.90740 1.13818 1.86728 1.47464 1.21852 0.92518 0.87164 0.96510 0.89527 1.23177 0.98539 0.93940 0.96659 1.67233 1.32662 1.00457 1.18963 1.23858 1.00556 0.95557 0.89404 1.24886 0.96473 0.96948 0.97962 1.23280 1.02132 0.93953 0.95057 1.23460 0.94272 0.94562 0.95991 1.24548 0.96452 1.02482 0.97754 1.21852 0.97671 0.85292 0.93605 1.88226 1.36377 1.12976 1.89374 0.92536 0.89926 0.90977 0.89579 0.90565 0.93577 0.90896 0.96011 0.90449 0.93698 0.92039 0.87759 0.88788 0.90744 0.87264 0.88044 0.90439 0.90849 0.88702 0.91844 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.60 59.85 0.57 1.26 16 2 N -0.60 -8.99 2.80 -181.57 -0.51 -9.50 16 3 C 0.12 2.22 5.26 -4.04 -0.02 2.20 16 4 C 0.13 2.76 4.52 -66.86 -0.30 2.46 16 5 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.16 -2.93 7.37 -25.79 -0.19 -3.12 16 7 C 0.16 3.73 7.63 -2.85 -0.02 3.71 16 8 N -0.60 -15.58 3.58 -169.72 -0.61 -16.19 16 9 C -0.22 -6.30 10.51 -15.06 -0.16 -6.45 16 10 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.54 11.33 55.49 0.63 -26.92 16 13 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.52 8.46 6.94 -10.99 -0.08 8.39 16 18 O -0.51 -10.86 16.17 -14.22 -0.23 -11.09 16 19 C 0.08 1.04 2.34 -27.74 -0.06 0.98 16 20 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 21 C 0.01 0.06 4.39 -3.74 -0.02 0.04 16 22 N -0.47 -4.44 6.03 -227.98 -1.37 -5.81 16 23 C 0.03 0.26 7.02 -0.24 0.00 0.26 16 24 C -0.14 -1.02 6.40 -98.01 -0.63 -1.64 16 25 C -0.11 -0.69 7.81 -30.34 -0.24 -0.93 16 26 C 0.01 0.07 1.59 -143.65 -0.23 -0.16 16 27 C -0.17 -1.56 7.01 -30.13 -0.21 -1.77 16 28 C 0.09 0.90 6.72 35.75 0.24 1.14 16 29 O -0.35 -4.91 10.01 -55.01 -0.55 -5.46 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.85 6.78 -51.93 -0.35 0.50 16 32 H 0.07 0.62 4.42 -51.93 -0.23 0.39 16 33 H 0.09 1.57 8.03 -51.93 -0.42 1.16 16 34 H 0.08 1.59 7.54 -51.93 -0.39 1.20 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.26 7.07 -51.93 -0.37 0.90 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 2.01 6.99 -51.93 -0.36 1.65 16 39 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.06 0.78 5.97 -51.93 -0.31 0.47 16 41 H 0.10 1.03 5.63 -51.93 -0.29 0.74 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.59 7.73 -51.93 -0.40 0.19 16 44 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.51 7.85 -51.93 -0.41 0.10 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.82 6.08 -51.93 -0.32 0.51 16 48 H 0.09 0.75 7.85 -51.93 -0.41 0.35 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -34.63 380.30 -11.37 -46.00 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.00 Total: -0.34 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.44 Total: 6.06 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -1.86 Total: -58.42 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.78 Total: -16.55 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.63 -11.37 -46.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085731453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.984 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds