Wall clock time and date at job start Tue Mar 31 2020 18:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99786 * 2 1 4 4 C 1.53002 * 109.47153 * 264.09684 * 3 2 1 5 5 H 1.08998 * 112.96067 * 295.46932 * 4 3 2 6 6 C 1.53946 * 113.76605 * 67.14198 * 4 3 2 7 7 C 1.53948 * 86.28958 * 137.91105 * 6 4 3 8 8 N 1.47581 * 113.77204 * 163.78540 * 4 3 2 9 9 C 1.36938 * 134.48902 * 41.06857 * 8 4 3 10 10 H 1.07997 * 120.00002 * 4.23830 * 9 8 4 11 11 C 1.38810 * 119.99654 * 184.24284 * 9 8 4 12 12 N 1.31622 * 120.00338 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99738 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47254 * 59.99948 * 13 11 9 15 15 H 1.48501 * 109.46877 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47017 * 299.99429 * 13 11 9 17 17 C 1.34775 * 120.00342 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99821 * 185.27749 * 17 2 1 19 19 C 1.50696 * 119.99779 * 5.28208 * 17 2 1 20 20 H 1.09003 * 109.20026 * 311.27300 * 19 17 2 21 21 C 1.53285 * 109.20985 * 70.62844 * 19 17 2 22 22 N 1.46787 * 108.50824 * 180.46753 * 21 19 17 23 23 C 1.49414 * 112.09928 * 193.76996 * 22 21 19 24 24 C 1.57026 * 99.32703 * 113.45333 * 23 22 21 25 25 C 1.56487 * 107.12934 * 40.31759 * 24 23 22 26 26 C 1.49508 * 107.60874 * 302.20250 * 22 21 19 27 27 C 1.54378 * 104.42722 * 288.57211 * 26 22 21 28 28 C 1.50172 * 114.92897 * 57.52950 * 26 22 21 29 29 O 1.42800 * 109.20375 * 191.97210 * 19 17 2 30 30 H 1.08998 * 109.47270 * 264.57893 * 1 2 3 31 31 H 1.09003 * 109.47402 * 24.57936 * 1 2 3 32 32 H 1.08996 * 109.46918 * 144.58112 * 1 2 3 33 33 H 1.09000 * 109.46848 * 24.09208 * 3 2 1 34 34 H 1.09001 * 109.47057 * 144.09696 * 3 2 1 35 35 H 1.09004 * 113.74045 * 252.25034 * 6 4 3 36 36 H 1.08992 * 113.74853 * 23.45769 * 6 4 3 37 37 H 1.09002 * 113.77215 * 90.68859 * 7 6 4 38 38 H 1.08998 * 113.76938 * 221.98076 * 7 6 4 39 39 H 0.96991 * 119.99953 * 180.02562 * 12 11 9 40 40 H 1.08994 * 109.62661 * 60.76056 * 21 19 17 41 41 H 1.09003 * 109.78843 * 300.27240 * 21 19 17 42 42 H 1.09004 * 111.42520 * 230.97807 * 23 22 21 43 43 H 1.09002 * 111.43428 * 355.87122 * 23 22 21 44 44 H 1.08994 * 118.35642 * 180.88290 * 24 23 22 45 45 H 1.09002 * 114.69801 * 190.07122 * 25 24 23 46 46 H 1.08999 * 114.70080 * 55.81945 * 25 24 23 47 47 H 1.08995 * 114.71908 * 45.66317 * 27 26 22 48 48 H 1.09005 * 114.71472 * 179.97438 * 27 26 22 49 49 H 1.09002 * 109.70331 * 66.60876 * 28 26 22 50 50 H 1.08990 * 109.70056 * 187.22163 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5810 1.6363 -1.4349 5 1 3.2775 0.9280 -1.8835 6 6 1.3763 1.9747 -2.3317 7 6 2.2339 3.1316 -2.8759 8 7 2.9780 3.0479 -1.6015 9 6 3.7317 3.9257 -0.8690 10 1 4.2381 3.5886 0.0233 11 6 3.8448 5.2487 -1.2734 12 7 3.2279 5.6595 -2.3612 13 14 4.8736 6.4460 -0.2746 14 1 6.2779 5.9662 -0.2202 15 1 4.8332 7.7859 -0.9135 16 1 4.3279 6.5375 1.1035 17 6 2.1390 -1.1671 0.0005 18 8 3.3479 -1.1692 0.0971 19 6 1.3903 -2.4695 -0.1190 20 1 0.5637 -2.4744 0.5915 21 6 0.8337 -2.6026 -1.5411 22 7 0.0988 -3.8696 -1.6371 23 6 -0.1959 -4.2425 -3.0536 24 6 0.7004 -5.5265 -3.1705 25 6 0.5564 -6.3131 -1.8254 26 6 1.0468 -4.9703 -1.2837 27 6 2.0117 -5.0478 -2.4863 28 6 1.6754 -4.8524 0.0751 29 8 2.2747 -3.5492 0.1833 30 1 -0.3634 -0.0971 1.0230 31 1 -0.3634 0.9345 -0.4275 32 1 -0.3633 -0.8375 -0.5956 33 1 1.5666 2.0525 0.4195 34 1 3.1000 1.1673 0.6026 35 1 1.1523 1.2080 -3.0734 36 1 0.4956 2.3014 -1.7789 37 1 2.8295 2.8642 -3.7487 38 1 1.6831 4.0632 -3.0061 39 1 3.3073 6.5839 -2.6439 40 1 1.6551 -2.6005 -2.2574 41 1 0.1607 -1.7718 -1.7532 42 1 -1.2509 -4.4794 -3.1918 43 1 0.1281 -3.4653 -3.7458 44 1 0.7257 -6.0552 -4.1233 45 1 1.2587 -7.1376 -1.7026 46 1 -0.4682 -6.5670 -1.5537 47 1 2.3828 -4.0843 -2.8357 48 1 2.7860 -5.8103 -2.4010 49 1 0.9124 -4.9711 0.8445 50 1 2.4404 -5.6196 0.1938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085731453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:36 Heat of formation + Delta-G solvation = 51.395851 kcal Electronic energy + Delta-G solvation = -30719.246034 eV Core-core repulsion = 26750.854085 eV Total energy + Delta-G solvation = -3968.391948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.19233 -41.22458 -39.63952 -38.35718 -36.61194 -34.78583 -34.21867 -31.35205 -30.42885 -29.86976 -29.38899 -27.51197 -26.48777 -25.63347 -25.32036 -24.68174 -23.68088 -21.36036 -21.05483 -20.46597 -19.84224 -18.78300 -18.23030 -18.03450 -17.23314 -17.00593 -16.82078 -16.56618 -16.42049 -16.08489 -15.69221 -15.49006 -15.19510 -15.01333 -14.53080 -14.28007 -14.13179 -13.94441 -13.77699 -13.67657 -13.46988 -13.35648 -13.27444 -12.90794 -12.76705 -12.57992 -12.44865 -12.32631 -12.31537 -11.97234 -11.87710 -11.79690 -11.67494 -11.59145 -11.37072 -11.16541 -10.85162 -10.79773 -10.64278 -9.71812 -9.68443 -8.92056 -7.90531 -5.25201 1.40760 1.43049 1.46611 1.52204 1.61882 2.45457 2.60113 2.74691 3.23784 3.27844 3.29108 3.40945 3.45329 3.47470 3.62670 3.78277 3.85285 3.94283 3.98109 4.14999 4.17734 4.23798 4.26950 4.41224 4.49288 4.53410 4.54913 4.62228 4.64703 4.68154 4.77120 4.80461 4.84990 4.90143 4.90910 4.93847 4.96246 5.02232 5.03708 5.09033 5.15164 5.21403 5.40001 5.45570 5.55724 5.70355 5.70597 5.92527 5.95522 6.34612 6.91905 7.06719 7.59917 8.55859 9.25055 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.002720 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.860001 B =10290.872187 C =10721.000595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.597 5.597 3 C 0.136 3.864 4 C 0.130 3.870 5 H 0.021 0.979 6 C -0.119 4.119 7 C 0.147 3.853 8 N -0.628 5.628 9 C -0.235 4.235 10 H 0.074 0.926 11 C -0.062 4.062 12 N -0.950 5.950 13 Si 0.975 3.025 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.272 1.272 17 C 0.511 3.489 18 O -0.574 6.574 19 C 0.092 3.908 20 H 0.111 0.889 21 C 0.014 3.986 22 N -0.469 5.469 23 C 0.030 3.970 24 C -0.135 4.135 25 C -0.090 4.090 26 C -0.002 4.002 27 C -0.185 4.185 28 C 0.087 3.913 29 O -0.387 6.387 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.008 0.992 38 H 0.053 0.947 39 H 0.249 0.751 40 H 0.037 0.963 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.717 -26.405 0.792 30.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.331 5.331 3 C 0.012 3.988 4 C 0.023 3.977 5 H 0.038 0.962 6 C -0.157 4.157 7 C 0.022 3.978 8 N -0.355 5.355 9 C -0.363 4.363 10 H 0.092 0.908 11 C -0.255 4.255 12 N -0.599 5.599 13 Si 0.803 3.197 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.198 1.198 17 C 0.299 3.701 18 O -0.452 6.452 19 C 0.030 3.970 20 H 0.128 0.872 21 C -0.115 4.115 22 N -0.193 5.193 23 C -0.097 4.097 24 C -0.153 4.153 25 C -0.127 4.127 26 C -0.092 4.092 27 C -0.224 4.224 28 C 0.011 3.989 29 O -0.306 6.306 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.120 0.880 49 H 0.095 0.905 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.301 -25.958 1.359 29.668 hybrid contribution 2.020 1.267 -0.430 2.424 sum -12.281 -24.691 0.929 27.592 Atomic orbital electron populations 1.22427 0.76366 1.05431 1.03952 1.47757 1.08703 1.04259 1.72361 1.21366 0.96456 0.84353 0.96652 1.22561 0.94074 0.86061 0.94981 0.96176 1.23499 0.96396 0.97416 0.98348 1.22293 0.91143 0.96966 0.87420 1.46457 1.59758 1.06916 1.22363 1.19292 1.22519 0.89672 1.04832 0.90806 1.25556 1.02299 0.98467 0.99182 1.69985 1.48016 1.15989 1.25869 0.85215 0.78351 0.77887 0.78261 1.21146 1.21622 1.19811 1.20742 0.87429 0.85870 0.76086 1.90707 1.16598 1.87673 1.50271 1.21783 0.92015 0.84987 0.98214 0.87168 1.23066 0.98098 0.95604 0.94731 1.67272 1.32044 0.99797 1.20138 1.23975 1.01673 0.95815 0.88268 1.24926 0.94494 0.96784 0.99105 1.23299 1.03005 0.92909 0.93506 1.23631 0.94363 0.95910 0.95292 1.24631 0.97627 1.01306 0.98795 1.22116 0.98490 0.83657 0.94662 1.88178 1.38028 1.14676 1.89728 0.90284 0.89124 0.88678 0.88828 0.93751 0.90173 0.88574 0.97452 0.92834 0.94183 0.94457 0.86388 0.87046 0.91263 0.85609 0.86291 0.89507 0.93928 0.87968 0.90482 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 9.60 127.77 1.23 2.26 16 2 N -0.60 -17.19 2.80 -846.75 -2.37 -19.56 16 3 C 0.14 5.08 5.26 86.38 0.45 5.53 16 4 C 0.13 5.59 4.52 45.09 0.20 5.79 16 5 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 6 C -0.12 -4.25 7.37 31.25 0.23 -4.02 16 7 C 0.15 7.13 7.63 86.44 0.66 7.79 16 8 N -0.63 -33.36 3.58 -690.86 -2.48 -35.84 16 9 C -0.23 -13.69 10.51 84.03 0.88 -12.80 16 10 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 11 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 12 N -0.95 -58.08 11.33 21.65 0.25 -57.83 16 13 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 14 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 C 0.51 16.82 6.94 87.66 0.61 17.43 16 18 O -0.57 -25.51 16.17 15.87 0.26 -25.25 16 19 C 0.09 2.24 2.34 29.94 0.07 2.31 16 20 H 0.11 2.14 7.56 -2.39 -0.02 2.13 16 21 C 0.01 0.29 4.39 86.42 0.38 0.66 16 22 N -0.47 -7.70 6.03 -875.19 -5.27 -12.97 16 23 C 0.03 0.39 7.02 87.23 0.61 1.00 16 24 C -0.13 -1.54 6.40 -15.58 -0.10 -1.64 16 25 C -0.09 -0.85 7.81 28.25 0.22 -0.63 16 26 C 0.00 -0.03 1.59 -5.73 -0.01 -0.04 16 27 C -0.19 -3.12 7.01 28.39 0.20 -2.92 16 28 C 0.09 1.54 6.72 71.07 0.48 2.01 16 29 O -0.39 -10.71 10.01 -130.07 -1.30 -12.02 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.50 6.78 -2.39 -0.02 1.49 16 32 H 0.10 1.26 4.42 -2.39 -0.01 1.25 16 33 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 34 H 0.04 1.93 7.54 -2.39 -0.02 1.91 16 35 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.10 3.04 7.07 -2.39 -0.02 3.02 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 38 H 0.05 2.85 6.99 -2.39 -0.02 2.83 16 39 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.04 0.95 5.97 -2.39 -0.01 0.94 16 41 H 0.12 2.00 5.63 -2.39 -0.01 1.99 16 42 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.07 0.98 7.73 -2.39 -0.02 0.96 16 44 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.12 0.74 7.85 -2.39 -0.02 0.72 16 46 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.04 0.98 6.08 -2.39 -0.01 0.97 16 48 H 0.10 1.51 7.85 -2.38 -0.02 1.49 16 49 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -79.72 380.30 -1.37 -81.09 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.94 Total: 13.63 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 6.58 Total: 19.58 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -9.88 Total: -126.20 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.05 Total: -37.27 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -79.72 -1.37 -81.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085731453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.490 kcal (2) G-P(sol) polarization free energy of solvation -79.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds