Wall clock time and date at job start Tue Mar 31 2020 18:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00116 * 2 1 4 4 C 1.53004 * 109.47062 * 261.60010 * 3 2 1 5 5 H 1.08995 * 112.73999 * 290.60878 * 4 3 2 6 6 C 1.53493 * 113.52049 * 159.81148 * 4 3 2 7 7 C 1.53756 * 83.26090 * 218.97729 * 6 4 3 8 8 N 1.47067 * 113.46202 * 61.35544 * 4 3 2 9 9 C 1.36939 * 136.05834 * 321.92011 * 8 4 3 10 10 H 1.07998 * 119.99989 * 319.02195 * 9 8 4 11 11 C 1.38812 * 119.99940 * 139.30036 * 9 8 4 12 12 N 1.31623 * 119.99967 * 174.35683 * 11 9 8 13 13 Si 1.86800 * 120.00054 * 354.34683 * 11 9 8 14 14 H 1.48499 * 109.46765 * 87.97911 * 13 11 9 15 15 H 1.48489 * 109.47421 * 207.97906 * 13 11 9 16 16 H 1.48496 * 109.47144 * 327.98420 * 13 11 9 17 17 C 1.34778 * 120.00010 * 179.97438 * 2 1 3 18 18 O 1.21273 * 120.00395 * 184.27449 * 17 2 1 19 19 C 1.50702 * 119.99750 * 4.28032 * 17 2 1 20 20 H 1.09003 * 109.19750 * 37.83712 * 19 17 2 21 21 C 1.53281 * 109.20847 * 278.52811 * 19 17 2 22 22 N 1.46787 * 108.50152 * 299.77518 * 21 19 17 23 23 C 1.49423 * 112.09583 * 193.76700 * 22 21 19 24 24 C 1.57029 * 99.32713 * 113.44785 * 23 22 21 25 25 C 1.55457 * 101.35928 * 315.70800 * 24 23 22 26 26 C 1.49507 * 107.60833 * 302.19637 * 22 21 19 27 27 C 1.52880 * 111.07111 * 200.48681 * 26 22 21 28 28 C 1.50167 * 114.92771 * 57.53052 * 26 22 21 29 29 O 1.42801 * 109.20361 * 157.18425 * 19 17 2 30 30 H 1.08997 * 109.47023 * 95.74499 * 1 2 3 31 31 H 1.08995 * 109.47043 * 215.75087 * 1 2 3 32 32 H 1.09000 * 109.46754 * 335.74745 * 1 2 3 33 33 H 1.09001 * 109.47730 * 141.60359 * 3 2 1 34 34 H 1.09002 * 109.47326 * 21.60503 * 3 2 1 35 35 H 1.09002 * 114.21258 * 332.73770 * 6 4 3 36 36 H 1.09012 * 114.20328 * 105.36461 * 6 4 3 37 37 H 1.08994 * 113.46824 * 271.51145 * 7 6 4 38 38 H 1.08993 * 113.55113 * 140.98525 * 7 6 4 39 39 H 0.96999 * 119.99761 * 179.97438 * 12 11 9 40 40 H 1.09004 * 109.62826 * 59.47444 * 21 19 17 41 41 H 1.08997 * 109.63701 * 180.02562 * 21 19 17 42 42 H 1.08998 * 111.42938 * 355.91860 * 23 22 21 43 43 H 1.09002 * 111.42740 * 230.97306 * 23 22 21 44 44 H 1.08993 * 118.87658 * 180.45286 * 24 23 22 45 45 H 1.09010 * 114.72054 * 311.21732 * 25 24 23 46 46 H 1.09002 * 114.76357 * 176.91336 * 25 24 23 47 47 H 1.09003 * 114.70077 * 173.23311 * 27 26 22 48 48 H 1.08997 * 114.69968 * 307.47976 * 27 26 22 49 49 H 1.08997 * 109.70099 * 187.21564 * 28 26 22 50 50 H 1.09002 * 109.73442 * 66.63540 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6350 1.6050 -1.4271 5 1 3.4097 0.9347 -1.7993 6 6 2.9611 3.0906 -1.6338 7 6 2.2686 2.8676 -2.9883 8 7 1.5105 1.7755 -2.3594 9 6 0.2951 1.1769 -2.5583 10 1 0.2034 0.1033 -2.4846 11 6 -0.8179 1.9494 -2.8605 12 7 -1.9603 1.3686 -3.1608 13 14 -0.6946 3.8132 -2.8407 14 1 -0.2538 4.2942 -4.1747 15 1 -2.0229 4.3938 -2.5191 16 1 0.2913 4.2331 -1.8126 17 6 2.1389 -1.1672 0.0005 18 8 3.3491 -1.1687 0.0788 19 6 1.3885 -2.4705 -0.0963 20 1 0.5478 -2.3501 -0.7796 21 6 0.8592 -2.8520 1.2907 22 7 2.0015 -2.9996 2.2007 23 6 1.6210 -3.6828 3.4740 24 6 2.4411 -5.0112 3.3050 25 6 2.1455 -5.3668 1.8208 26 6 2.9080 -4.0391 1.6237 27 6 3.8290 -4.6216 2.6959 28 6 3.4019 -3.7481 0.2358 29 8 2.2634 -3.4799 -0.6013 30 1 -0.3633 -0.1029 -1.0225 31 1 -0.3633 -0.8340 0.6004 32 1 -0.3633 0.9370 0.4221 33 1 3.0767 1.1807 0.6383 34 1 1.5518 2.0611 0.3784 35 1 2.4285 3.7629 -0.9611 36 1 4.0268 3.3084 -1.7059 37 1 2.9467 2.5301 -3.7721 38 1 1.6448 3.7047 -3.3015 39 1 -2.7381 1.9084 -3.3715 40 1 0.1971 -2.0679 1.6583 41 1 0.3153 -3.7945 1.2288 42 1 0.5497 -3.8788 3.5161 43 1 1.9541 -3.1172 4.3443 44 1 2.3821 -5.7693 4.0859 45 1 1.0914 -5.3324 1.5450 46 1 2.6655 -6.2504 1.4507 47 1 4.4348 -5.4658 2.3664 48 1 4.3862 -3.8808 3.2692 49 1 3.9459 -4.6107 -0.1490 50 1 4.0582 -2.8780 0.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085731454.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:39 Heat of formation + Delta-G solvation = 68.303063 kcal Electronic energy + Delta-G solvation = -31892.659832 eV Core-core repulsion = 27925.001035 eV Total energy + Delta-G solvation = -3967.658796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.23164 -41.13367 -39.92714 -38.07333 -36.32823 -34.69382 -34.49557 -31.28680 -30.47636 -30.33401 -29.11567 -27.39067 -26.46828 -25.62376 -25.15452 -24.79479 -23.60921 -21.41934 -21.06878 -20.61027 -19.53905 -19.13139 -18.18181 -17.63405 -17.21480 -17.14183 -16.75203 -16.67961 -16.44048 -15.67847 -15.51440 -15.35373 -15.28101 -14.87324 -14.80949 -14.35546 -14.20844 -13.95080 -13.74819 -13.57301 -13.30996 -13.11780 -13.03399 -12.86486 -12.75958 -12.73933 -12.57791 -12.51823 -12.27321 -12.10997 -11.95176 -11.86129 -11.57014 -11.54341 -11.34950 -11.16443 -11.04034 -10.54879 -10.00313 -9.45498 -9.40901 -8.63526 -8.09375 -5.58507 1.36437 1.42862 1.54473 1.66525 2.13777 2.48008 2.66642 2.68262 3.10211 3.22792 3.28005 3.36013 3.48545 3.52213 3.59213 3.79214 3.91833 4.01527 4.06518 4.16993 4.30150 4.34378 4.34571 4.41356 4.51890 4.56807 4.59643 4.67413 4.70871 4.72541 4.75769 4.80855 4.82941 4.85203 4.88689 4.93099 4.94749 4.99747 5.01448 5.11507 5.19980 5.36268 5.50337 5.56200 5.71859 5.76024 5.82625 5.95040 6.24031 6.54724 6.60655 7.28137 7.50683 8.49562 9.07363 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003644 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.278812 B = 7681.071915 C = 8156.165150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.589 5.589 3 C 0.127 3.873 4 C 0.126 3.874 5 H 0.037 0.963 6 C -0.128 4.128 7 C 0.087 3.913 8 N -0.637 5.637 9 C -0.201 4.201 10 H 0.053 0.947 11 C -0.010 4.010 12 N -0.949 5.949 13 Si 0.944 3.056 14 H -0.294 1.294 15 H -0.309 1.309 16 H -0.246 1.246 17 C 0.505 3.495 18 O -0.566 6.566 19 C 0.079 3.921 20 H 0.120 0.880 21 C 0.020 3.980 22 N -0.490 5.490 23 C 0.030 3.970 24 C -0.125 4.125 25 C -0.172 4.172 26 C 0.005 3.995 27 C -0.105 4.105 28 C 0.066 3.934 29 O -0.378 6.378 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.121 0.879 48 H 0.067 0.933 49 H 0.110 0.890 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.128 -9.958 15.128 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.320 5.320 3 C 0.003 3.997 4 C 0.019 3.981 5 H 0.055 0.945 6 C -0.167 4.167 7 C -0.037 4.037 8 N -0.365 5.365 9 C -0.329 4.329 10 H 0.071 0.929 11 C -0.207 4.207 12 N -0.593 5.593 13 Si 0.774 3.226 14 H -0.222 1.222 15 H -0.237 1.237 16 H -0.169 1.169 17 C 0.293 3.707 18 O -0.447 6.447 19 C 0.017 3.983 20 H 0.138 0.862 21 C -0.109 4.109 22 N -0.214 5.214 23 C -0.097 4.097 24 C -0.143 4.143 25 C -0.210 4.210 26 C -0.085 4.085 27 C -0.142 4.142 28 C -0.010 4.010 29 O -0.295 6.295 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.151 0.849 45 H 0.079 0.921 46 H 0.124 0.876 47 H 0.139 0.861 48 H 0.086 0.914 49 H 0.128 0.872 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.539 -9.520 14.994 19.707 hybrid contribution -0.927 0.355 -0.922 1.354 sum 7.613 -9.165 14.072 18.439 Atomic orbital electron populations 1.22282 0.78307 1.02255 1.03940 1.47664 1.07734 1.05460 1.71134 1.21680 0.96563 0.84908 0.96562 1.22656 0.89425 0.95309 0.90692 0.94535 1.23441 1.01137 0.95412 0.96685 1.22915 0.93349 0.91423 0.96041 1.45990 1.14450 1.41952 1.34110 1.18139 0.81961 0.90211 1.42583 0.92947 1.25871 0.94317 1.01399 0.99079 1.69843 1.01635 1.36519 1.51351 0.85793 0.75770 0.82605 0.78428 1.22177 1.23723 1.16933 1.21336 0.87900 0.86166 0.75269 1.90460 1.15127 1.87062 1.52040 1.22157 0.92776 0.85738 0.97600 0.86226 1.23028 0.94102 1.02824 0.90926 1.67213 1.12061 1.38319 1.03804 1.23948 0.99671 0.93208 0.92860 1.24836 0.95412 0.97633 0.96426 1.24563 1.00529 0.98314 0.97640 1.23431 0.98267 0.91038 0.95766 1.23379 0.95014 1.00472 0.95336 1.22300 0.88402 1.02607 0.87658 1.88106 1.37470 1.55264 1.48686 0.90793 0.90900 0.91456 0.90599 0.89999 0.89175 0.88416 0.93723 0.94991 0.92872 0.87944 0.90899 0.90038 0.88743 0.84865 0.92104 0.87576 0.86133 0.91441 0.87219 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.68 8.46 127.77 1.08 3.77 16 2 N -0.59 -22.07 2.58 -846.76 -2.18 -24.25 16 3 C 0.13 4.60 5.41 86.38 0.47 5.07 16 4 C 0.13 4.96 4.26 41.79 0.18 5.14 16 5 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.13 -4.23 8.03 31.01 0.25 -3.98 16 7 C 0.09 3.52 7.40 83.27 0.62 4.14 16 8 N -0.64 -29.54 3.03 -713.37 -2.16 -31.70 16 9 C -0.20 -10.65 7.92 84.03 0.67 -9.98 16 10 H 0.05 3.09 6.28 -2.91 -0.02 3.07 16 11 C -0.01 -0.55 5.50 84.86 0.47 -0.09 16 12 N -0.95 -55.40 13.97 21.65 0.30 -55.10 16 13 Si 0.94 44.70 25.12 68.60 1.72 46.42 16 14 H -0.29 -14.10 7.10 99.48 0.71 -13.39 16 15 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 16 H -0.25 -10.70 6.59 99.48 0.66 -10.05 16 17 C 0.50 19.30 6.32 87.66 0.55 19.86 16 18 O -0.57 -24.04 13.21 15.13 0.20 -23.84 16 19 C 0.08 2.64 2.87 29.94 0.09 2.72 16 20 H 0.12 4.12 7.33 -2.39 -0.02 4.10 16 21 C 0.02 0.53 4.65 86.42 0.40 0.93 16 22 N -0.49 -12.65 5.57 -875.15 -4.87 -17.53 16 23 C 0.03 0.56 7.02 87.23 0.61 1.17 16 24 C -0.12 -1.90 6.40 -15.57 -0.10 -2.00 16 25 C -0.17 -3.21 7.01 28.38 0.20 -3.01 16 26 C 0.01 0.12 1.59 -5.72 -0.01 0.11 16 27 C -0.10 -1.85 7.81 28.24 0.22 -1.63 16 28 C 0.07 1.96 6.13 71.07 0.44 2.40 16 29 O -0.38 -13.19 10.59 -130.84 -1.39 -14.57 16 30 H 0.07 3.31 4.44 -2.39 -0.01 3.30 16 31 H 0.07 2.14 4.96 -2.39 -0.01 2.13 16 32 H 0.07 2.40 7.76 -2.39 -0.02 2.38 16 33 H 0.08 2.65 7.63 -2.39 -0.02 2.63 16 34 H 0.08 2.84 7.62 -2.39 -0.02 2.82 16 35 H 0.09 2.85 7.83 -2.39 -0.02 2.83 16 36 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.03 1.34 4.59 -2.39 -0.01 1.33 16 39 H 0.26 14.76 8.31 -92.71 -0.77 13.98 16 40 H 0.10 2.53 6.04 -2.38 -0.01 2.52 16 41 H 0.07 1.72 5.97 -2.39 -0.01 1.70 16 42 H 0.08 1.33 7.73 -2.39 -0.02 1.31 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 44 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.25 6.08 -2.38 -0.01 1.24 16 46 H 0.11 1.67 7.85 -2.39 -0.02 1.65 16 47 H 0.12 1.60 7.85 -2.39 -0.02 1.58 16 48 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 50 H 0.08 2.79 5.29 -2.39 -0.01 2.78 16 Total: -1.00 -67.96 362.20 -1.35 -69.31 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.91 Total: 26.65 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 6.12 Total: 24.62 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -8.92 Total: -128.58 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.19 Total: -38.42 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.72 Total: 46.42 kcal Total: -67.96 -1.35 -69.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085731454.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.615 kcal (2) G-P(sol) polarization free energy of solvation -67.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds