Wall clock time and date at job start Tue Mar 31 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99476 * 2 1 4 4 C 1.53007 * 109.47291 * 275.71578 * 3 2 1 5 5 H 1.09002 * 112.96085 * 64.56730 * 4 3 2 6 6 C 1.53943 * 113.77034 * 292.88868 * 4 3 2 7 7 C 1.53948 * 86.28487 * 222.08871 * 6 4 3 8 8 N 1.47573 * 113.76870 * 196.38735 * 4 3 2 9 9 C 1.36938 * 134.49835 * 318.94551 * 8 4 3 10 10 H 1.08004 * 119.99441 * 5.96298 * 9 8 4 11 11 C 1.38810 * 120.00201 * 185.96262 * 9 8 4 12 12 N 1.31617 * 120.00232 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00033 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47330 * 89.99714 * 13 11 9 15 15 H 1.48499 * 109.47297 * 210.00363 * 13 11 9 16 16 H 1.48503 * 109.46863 * 330.00101 * 13 11 9 17 17 C 1.34772 * 120.00440 * 180.02562 * 2 1 3 18 18 O 1.21284 * 120.00186 * 179.72338 * 17 2 1 19 19 C 1.50700 * 119.99938 * 359.97438 * 17 2 1 20 20 H 1.09001 * 110.32463 * 32.64966 * 19 17 2 21 21 C 1.54911 * 110.36920 * 270.41434 * 19 17 2 22 22 C 1.55154 * 101.58071 * 204.14928 * 21 19 17 23 23 C 1.54325 * 102.94355 * 35.50348 * 22 21 19 24 24 N 1.47024 * 107.26904 * 337.80589 * 23 22 21 25 25 C 1.34778 * 125.64696 * 178.97699 * 24 23 22 26 26 O 1.21280 * 119.99991 * 185.48223 * 25 24 23 27 27 C 1.50697 * 120.00274 * 5.48841 * 25 24 23 28 28 C 1.52998 * 117.49788 * 248.74542 * 27 25 24 29 29 C 1.52995 * 117.50284 * 180.08686 * 27 25 24 30 30 H 1.08996 * 109.47314 * 272.24281 * 1 2 3 31 31 H 1.08994 * 109.47624 * 32.24627 * 1 2 3 32 32 H 1.09005 * 109.46715 * 152.24295 * 1 2 3 33 33 H 1.08993 * 109.47249 * 35.71742 * 3 2 1 34 34 H 1.09003 * 109.46927 * 155.72019 * 3 2 1 35 35 H 1.09003 * 113.73933 * 336.43397 * 6 4 3 36 36 H 1.09000 * 113.74288 * 107.74521 * 6 4 3 37 37 H 1.09008 * 113.76309 * 137.90863 * 7 6 4 38 38 H 1.09000 * 113.76868 * 269.30181 * 7 6 4 39 39 H 0.96995 * 120.00298 * 180.02562 * 12 11 9 40 40 H 1.08993 * 111.00102 * 322.22323 * 21 19 17 41 41 H 1.09003 * 111.00292 * 86.04105 * 21 19 17 42 42 H 1.09003 * 110.71903 * 153.86274 * 22 21 19 43 43 H 1.08998 * 110.72442 * 277.14048 * 22 21 19 44 44 H 1.09001 * 109.88450 * 97.22031 * 23 22 21 45 45 H 1.08997 * 109.88444 * 218.38877 * 23 22 21 46 46 H 1.09004 * 115.54713 * 34.41018 * 27 25 24 47 47 H 1.09001 * 117.50101 * 0.02562 * 28 27 25 48 48 H 1.09005 * 117.49983 * 145.01716 * 28 27 25 49 49 H 1.08994 * 117.50455 * 214.97993 * 29 27 25 50 50 H 1.09011 * 117.49582 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3280 1.7824 -1.4354 5 1 1.3676 2.0312 -1.8870 6 6 3.2254 0.9067 -2.3285 7 6 3.8003 2.2268 -2.8732 8 7 3.3550 2.8290 -1.6015 9 6 3.7402 3.9204 -0.8698 10 1 3.3054 4.0995 0.1025 11 6 4.6895 4.7967 -1.3776 12 7 5.2199 4.5782 -2.5622 13 14 5.2155 6.2852 -0.3790 14 1 6.3716 5.9221 0.4793 15 1 5.6068 7.3844 -1.2976 16 1 4.0860 6.7324 0.4752 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0056 19 6 1.3855 -2.4723 -0.0005 20 1 0.4507 -2.3698 -0.5516 21 6 1.1074 -2.9343 1.4517 22 6 0.9429 -4.4658 1.2652 23 6 1.9610 -4.7898 0.1516 24 7 2.2136 -3.5427 -0.5851 25 6 3.0613 -3.4017 -1.6234 26 8 3.2665 -2.3029 -2.0939 27 6 3.7542 -4.6095 -2.1998 28 6 5.2659 -4.7226 -1.9926 29 6 4.7060 -4.3835 -3.3762 30 1 -0.3634 0.0402 1.0268 31 1 -0.3634 0.8691 -0.5483 32 1 -0.3633 -0.9095 -0.4786 33 1 1.6565 2.0006 0.5999 34 1 3.1904 1.1151 0.4226 35 1 3.9482 0.3093 -1.7728 36 1 2.6752 0.3283 -3.0707 37 1 4.8831 2.2157 -2.9986 38 1 3.2734 2.6077 -3.7480 39 1 5.8835 5.1903 -2.9169 40 1 1.9524 -2.7085 2.1020 41 1 0.1909 -2.4862 1.8355 42 1 1.1948 -4.9955 2.1839 43 1 -0.0701 -4.7086 0.9441 44 1 2.8888 -5.1545 0.5922 45 1 1.5476 -5.5407 -0.5217 46 1 3.1746 -5.5326 -2.1914 47 1 5.7592 -3.9237 -1.4389 48 1 5.6809 -5.7202 -1.8483 49 1 4.7528 -5.1580 -4.1417 50 1 4.8306 -3.3612 -3.7336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085860158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:24 Heat of formation + Delta-G solvation = 35.662088 kcal Electronic energy + Delta-G solvation = -30963.654202 eV Core-core repulsion = 26994.579986 eV Total energy + Delta-G solvation = -3969.074215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78109 -39.09623 -37.88153 -37.07324 -35.88504 -34.98525 -32.02934 -31.80367 -30.25334 -28.06927 -27.61019 -26.21184 -25.30532 -23.34314 -22.99371 -22.49979 -22.20395 -21.43677 -19.78693 -18.73157 -18.33609 -17.53805 -17.41988 -16.49618 -15.90774 -15.69383 -15.40346 -14.91547 -14.67979 -14.54548 -14.43991 -13.88716 -13.65056 -13.45739 -13.42272 -13.24341 -12.72781 -12.66435 -12.53653 -12.24616 -12.10531 -11.83705 -11.79563 -11.64587 -11.57317 -11.22340 -11.12228 -10.85878 -10.68665 -10.67078 -10.56132 -10.52926 -10.21917 -9.70686 -9.63613 -9.47034 -9.43066 -9.25186 -8.62561 -8.58537 -8.12390 -6.66991 -5.60604 -2.91610 2.59546 2.65560 3.08978 3.35264 3.48100 3.52050 3.54202 3.83590 4.11370 4.25656 4.52548 4.58716 4.61596 4.70890 4.74475 4.80696 4.83034 4.99293 5.07168 5.21539 5.32512 5.37890 5.38065 5.47268 5.49638 5.50972 5.56363 5.61802 5.63128 5.72165 5.79162 5.82656 5.90275 6.09176 6.12270 6.16112 6.21354 6.32819 6.67293 6.81651 6.94738 7.00262 7.17205 7.46007 7.48319 7.71230 7.79481 7.83761 8.16279 8.33097 8.63837 9.20839 9.87388 10.81842 11.57195 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.003502 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.951618 B = 7994.330949 C = 9222.795972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.127 3.873 5 H 0.036 0.964 6 C -0.141 4.141 7 C 0.163 3.837 8 N -0.601 5.601 9 C -0.220 4.220 10 H 0.077 0.923 11 C -0.009 4.009 12 N -0.919 5.919 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.514 3.486 18 O -0.502 6.502 19 C 0.117 3.883 20 H 0.093 0.907 21 C -0.121 4.121 22 C -0.129 4.129 23 C 0.106 3.894 24 N -0.609 5.609 25 C 0.552 3.448 26 O -0.491 6.491 27 C -0.188 4.188 28 C -0.152 4.152 29 C -0.148 4.148 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.252 0.748 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.986 -25.023 6.021 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.345 5.345 3 C -0.002 4.002 4 C 0.019 3.981 5 H 0.053 0.947 6 C -0.179 4.179 7 C 0.037 3.963 8 N -0.327 5.327 9 C -0.347 4.347 10 H 0.094 0.906 11 C -0.205 4.205 12 N -0.567 5.567 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.299 3.701 18 O -0.375 6.375 19 C 0.010 3.990 20 H 0.111 0.889 21 C -0.159 4.159 22 C -0.167 4.167 23 C -0.018 4.018 24 N -0.346 5.346 25 C 0.340 3.660 26 O -0.363 6.363 27 C -0.209 4.209 28 C -0.190 4.190 29 C -0.185 4.185 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.933 -24.083 5.719 27.060 hybrid contribution -0.096 0.932 0.460 1.044 sum -11.030 -23.151 6.178 26.378 Atomic orbital electron populations 1.21807 0.80577 1.02997 1.01277 1.47717 1.06310 1.06409 1.74082 1.21739 0.97475 0.82262 0.98747 1.22515 0.93000 0.89487 0.93118 0.94678 1.23669 0.99203 0.96635 0.98441 1.22127 0.99132 0.86871 0.88123 1.45974 1.35623 1.28470 1.22614 1.18986 1.18644 0.99202 0.97914 0.90568 1.24784 1.00168 0.98812 0.96744 1.69855 1.31374 1.38145 1.17302 0.86186 0.78447 0.82673 0.78863 1.21658 1.21764 1.20806 1.20142 0.88246 0.84571 0.77141 1.90724 1.13412 1.86431 1.46909 1.21913 0.94015 0.87653 0.95462 0.88914 1.22723 1.03370 0.95686 0.94131 1.22635 0.99499 0.95854 0.98748 1.21976 0.99247 0.86793 0.93742 1.48138 1.43997 1.09548 1.32940 1.19306 0.78136 0.89678 0.78848 1.90854 1.60195 1.26146 1.59114 1.22108 0.93973 0.98421 1.06372 1.22938 0.92225 1.03402 1.00425 1.22975 1.00324 1.04316 0.90870 0.92882 0.90880 0.91575 0.91847 0.89201 0.89355 0.94114 0.91950 0.96014 0.93830 0.89874 0.89176 0.89591 0.90205 0.91257 0.91308 0.86456 0.87958 0.88128 0.88146 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.33 59.85 0.62 1.45 16 2 N -0.61 -9.71 2.81 -181.57 -0.51 -10.22 16 3 C 0.12 2.41 5.39 -4.04 -0.02 2.39 16 4 C 0.13 2.92 4.57 -66.87 -0.31 2.61 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 6 C -0.14 -3.38 7.30 -25.81 -0.19 -3.57 16 7 C 0.16 4.44 7.38 -2.97 -0.02 4.42 16 8 N -0.60 -16.84 3.57 -170.73 -0.61 -17.45 16 9 C -0.22 -6.53 10.51 -15.06 -0.16 -6.69 16 10 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 12 N -0.92 -29.21 11.55 55.49 0.64 -28.57 16 13 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 C 0.51 8.57 5.40 -10.99 -0.06 8.51 16 18 O -0.50 -10.71 12.35 -17.85 -0.22 -10.93 16 19 C 0.12 1.37 2.91 -67.57 -0.20 1.18 16 20 H 0.09 0.95 5.99 -51.93 -0.31 0.64 16 21 C -0.12 -0.98 6.49 -24.58 -0.16 -1.14 16 22 C -0.13 -0.71 6.95 -24.90 -0.17 -0.88 16 23 C 0.11 0.78 6.36 -3.06 -0.02 0.76 16 24 N -0.61 -7.31 3.12 -164.35 -0.51 -7.83 16 25 C 0.55 8.15 7.05 -10.99 -0.08 8.07 16 26 O -0.49 -9.59 13.67 -17.84 -0.24 -9.83 16 27 C -0.19 -2.04 5.50 -91.78 -0.51 -2.54 16 28 C -0.15 -1.58 10.24 -26.70 -0.27 -1.85 16 29 C -0.15 -1.61 10.05 -26.70 -0.27 -1.88 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.07 0.58 5.74 -51.93 -0.30 0.28 16 33 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.09 2.09 7.26 -51.93 -0.38 1.71 16 35 H 0.09 2.32 6.69 -51.93 -0.35 1.98 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.86 7.44 -51.92 -0.39 1.47 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.38 7.96 -51.93 -0.41 -0.03 16 46 H 0.12 0.93 7.74 -51.93 -0.40 0.53 16 47 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.11 1.51 7.67 -51.92 -0.40 1.12 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -38.90 396.32 -10.80 -49.70 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.39 Total: 0.39 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.91 Total: 10.49 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.99 Total: -64.07 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.46 Total: -20.77 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.90 -10.80 -49.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085860158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.362 kcal (2) G-P(sol) polarization free energy of solvation -38.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds