Wall clock time and date at job start Tue Mar 31 2020 18:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99476 * 2 1 4 4 C 1.53007 * 109.47291 * 275.71578 * 3 2 1 5 5 H 1.09002 * 112.96085 * 64.56730 * 4 3 2 6 6 C 1.53943 * 113.77034 * 292.88868 * 4 3 2 7 7 C 1.53948 * 86.28487 * 222.08871 * 6 4 3 8 8 N 1.47573 * 113.76870 * 196.38735 * 4 3 2 9 9 C 1.36938 * 134.49835 * 318.94551 * 8 4 3 10 10 H 1.08004 * 119.99441 * 5.96298 * 9 8 4 11 11 C 1.38810 * 120.00201 * 185.96262 * 9 8 4 12 12 N 1.31617 * 120.00232 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00033 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47330 * 89.99714 * 13 11 9 15 15 H 1.48499 * 109.47297 * 210.00363 * 13 11 9 16 16 H 1.48503 * 109.46863 * 330.00101 * 13 11 9 17 17 C 1.34772 * 120.00440 * 180.02562 * 2 1 3 18 18 O 1.21284 * 120.00186 * 179.72338 * 17 2 1 19 19 C 1.50700 * 119.99938 * 359.97438 * 17 2 1 20 20 H 1.09001 * 110.32463 * 32.64966 * 19 17 2 21 21 C 1.54911 * 110.36920 * 270.41434 * 19 17 2 22 22 C 1.55154 * 101.58071 * 204.14928 * 21 19 17 23 23 C 1.54325 * 102.94355 * 35.50348 * 22 21 19 24 24 N 1.47024 * 107.26904 * 337.80589 * 23 22 21 25 25 C 1.34778 * 125.64696 * 178.97699 * 24 23 22 26 26 O 1.21280 * 119.99991 * 185.48223 * 25 24 23 27 27 C 1.50697 * 120.00274 * 5.48841 * 25 24 23 28 28 C 1.52998 * 117.49788 * 248.74542 * 27 25 24 29 29 C 1.52995 * 117.50284 * 180.08686 * 27 25 24 30 30 H 1.08996 * 109.47314 * 272.24281 * 1 2 3 31 31 H 1.08994 * 109.47624 * 32.24627 * 1 2 3 32 32 H 1.09005 * 109.46715 * 152.24295 * 1 2 3 33 33 H 1.08993 * 109.47249 * 35.71742 * 3 2 1 34 34 H 1.09003 * 109.46927 * 155.72019 * 3 2 1 35 35 H 1.09003 * 113.73933 * 336.43397 * 6 4 3 36 36 H 1.09000 * 113.74288 * 107.74521 * 6 4 3 37 37 H 1.09008 * 113.76309 * 137.90863 * 7 6 4 38 38 H 1.09000 * 113.76868 * 269.30181 * 7 6 4 39 39 H 0.96995 * 120.00298 * 180.02562 * 12 11 9 40 40 H 1.08993 * 111.00102 * 322.22323 * 21 19 17 41 41 H 1.09003 * 111.00292 * 86.04105 * 21 19 17 42 42 H 1.09003 * 110.71903 * 153.86274 * 22 21 19 43 43 H 1.08998 * 110.72442 * 277.14048 * 22 21 19 44 44 H 1.09001 * 109.88450 * 97.22031 * 23 22 21 45 45 H 1.08997 * 109.88444 * 218.38877 * 23 22 21 46 46 H 1.09004 * 115.54713 * 34.41018 * 27 25 24 47 47 H 1.09001 * 117.50101 * 0.02562 * 28 27 25 48 48 H 1.09005 * 117.49983 * 145.01716 * 28 27 25 49 49 H 1.08994 * 117.50455 * 214.97993 * 29 27 25 50 50 H 1.09011 * 117.49582 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3280 1.7824 -1.4354 5 1 1.3676 2.0312 -1.8870 6 6 3.2254 0.9067 -2.3285 7 6 3.8003 2.2268 -2.8732 8 7 3.3550 2.8290 -1.6015 9 6 3.7402 3.9204 -0.8698 10 1 3.3054 4.0995 0.1025 11 6 4.6895 4.7967 -1.3776 12 7 5.2199 4.5782 -2.5622 13 14 5.2155 6.2852 -0.3790 14 1 6.3716 5.9221 0.4793 15 1 5.6068 7.3844 -1.2976 16 1 4.0860 6.7324 0.4752 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0056 19 6 1.3855 -2.4723 -0.0005 20 1 0.4507 -2.3698 -0.5516 21 6 1.1074 -2.9343 1.4517 22 6 0.9429 -4.4658 1.2652 23 6 1.9610 -4.7898 0.1516 24 7 2.2136 -3.5427 -0.5851 25 6 3.0613 -3.4017 -1.6234 26 8 3.2665 -2.3029 -2.0939 27 6 3.7542 -4.6095 -2.1998 28 6 5.2659 -4.7226 -1.9926 29 6 4.7060 -4.3835 -3.3762 30 1 -0.3634 0.0402 1.0268 31 1 -0.3634 0.8691 -0.5483 32 1 -0.3633 -0.9095 -0.4786 33 1 1.6565 2.0006 0.5999 34 1 3.1904 1.1151 0.4226 35 1 3.9482 0.3093 -1.7728 36 1 2.6752 0.3283 -3.0707 37 1 4.8831 2.2157 -2.9986 38 1 3.2734 2.6077 -3.7480 39 1 5.8835 5.1903 -2.9169 40 1 1.9524 -2.7085 2.1020 41 1 0.1909 -2.4862 1.8355 42 1 1.1948 -4.9955 2.1839 43 1 -0.0701 -4.7086 0.9441 44 1 2.8888 -5.1545 0.5922 45 1 1.5476 -5.5407 -0.5217 46 1 3.1746 -5.5326 -2.1914 47 1 5.7592 -3.9237 -1.4389 48 1 5.6809 -5.7202 -1.8483 49 1 4.7528 -5.1580 -4.1417 50 1 4.8306 -3.3612 -3.7336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085860158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:23 Heat of formation + Delta-G solvation = 9.940642 kcal Electronic energy + Delta-G solvation = -30964.769567 eV Core-core repulsion = 26994.579986 eV Total energy + Delta-G solvation = -3970.189581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82438 -40.42872 -39.42515 -38.28540 -36.88098 -36.34722 -34.26637 -32.63483 -31.29750 -29.87785 -29.35369 -27.34043 -26.18492 -25.32603 -24.64718 -23.39590 -23.22596 -22.36505 -21.01360 -20.64677 -19.38836 -18.79169 -18.47615 -18.32324 -17.25326 -16.91829 -16.77853 -16.37010 -15.96763 -15.78897 -15.63855 -15.34907 -15.16427 -14.62375 -14.41435 -14.22787 -14.12559 -13.92162 -13.69129 -13.51381 -13.39132 -13.27953 -12.96338 -12.88194 -12.66414 -12.55001 -12.52109 -12.47580 -12.26445 -12.17199 -11.84903 -11.67898 -11.61383 -11.49058 -11.42365 -11.26869 -10.88812 -10.76471 -10.63607 -9.57113 -9.54377 -8.91411 -7.91461 -5.25868 1.40544 1.45293 1.52989 1.55550 1.64930 2.00466 2.16111 2.47998 2.95873 3.26081 3.33591 3.44658 3.59120 3.76761 3.80120 3.88859 3.92524 3.96720 3.99374 4.16089 4.19994 4.26038 4.30052 4.39692 4.44971 4.50666 4.65368 4.70915 4.77602 4.80479 4.82040 4.85747 4.87165 4.92907 4.96566 5.03030 5.04358 5.07350 5.13323 5.19137 5.21557 5.29698 5.40825 5.45464 5.56378 5.73496 5.89936 6.49458 6.59481 6.87814 7.27554 7.43555 7.58656 8.56945 9.27181 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.003502 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.951618 B = 7994.330949 C = 9222.795972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.612 5.612 3 C 0.137 3.863 4 C 0.137 3.863 5 H 0.054 0.946 6 C -0.110 4.110 7 C 0.161 3.839 8 N -0.626 5.626 9 C -0.232 4.232 10 H 0.089 0.911 11 C -0.074 4.074 12 N -0.959 5.959 13 Si 0.983 3.017 14 H -0.288 1.288 15 H -0.293 1.293 16 H -0.261 1.261 17 C 0.503 3.497 18 O -0.561 6.561 19 C 0.115 3.885 20 H 0.117 0.883 21 C -0.116 4.116 22 C -0.115 4.115 23 C 0.095 3.905 24 N -0.611 5.611 25 C 0.535 3.465 26 O -0.555 6.555 27 C -0.180 4.180 28 C -0.147 4.147 29 C -0.155 4.155 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.247 0.753 40 H 0.058 0.942 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.159 0.841 47 H 0.065 0.935 48 H 0.139 0.861 49 H 0.134 0.866 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.447 -27.668 8.039 32.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.346 5.346 3 C 0.012 3.988 4 C 0.030 3.970 5 H 0.072 0.928 6 C -0.149 4.149 7 C 0.035 3.965 8 N -0.352 5.352 9 C -0.360 4.360 10 H 0.107 0.893 11 C -0.266 4.266 12 N -0.609 5.609 13 Si 0.811 3.189 14 H -0.216 1.216 15 H -0.219 1.219 16 H -0.185 1.185 17 C 0.291 3.709 18 O -0.437 6.437 19 C 0.008 3.992 20 H 0.134 0.866 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.027 4.027 24 N -0.347 5.347 25 C 0.325 3.675 26 O -0.432 6.432 27 C -0.201 4.201 28 C -0.184 4.184 29 C -0.193 4.193 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.176 0.824 47 H 0.084 0.916 48 H 0.157 0.843 49 H 0.152 0.848 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.493 -26.795 7.797 31.445 hybrid contribution 0.965 1.696 -0.162 1.958 sum -13.527 -25.099 7.635 29.517 Atomic orbital electron populations 1.22163 0.76926 1.04383 1.03735 1.47812 1.08424 1.04696 1.73675 1.21216 0.96535 0.84792 0.96230 1.22629 0.92312 0.87000 0.95051 0.92818 1.23252 0.98604 0.94813 0.98190 1.22011 0.96943 0.89043 0.88485 1.46260 1.37333 1.29051 1.22593 1.19463 1.18556 0.99351 0.98587 0.89342 1.25766 1.00513 1.02225 0.98111 1.70076 1.32152 1.39279 1.19351 0.85009 0.78312 0.78328 0.77268 1.21561 1.21942 1.18545 1.21173 0.87979 0.86250 0.75475 1.90702 1.16288 1.87373 1.49370 1.22156 0.93670 0.84943 0.98429 0.86593 1.22784 1.03716 0.98020 0.90906 1.22683 1.00313 0.93446 0.98828 1.22358 1.00286 0.85334 0.94688 1.48353 1.42930 1.11310 1.32098 1.20068 0.78289 0.89967 0.79215 1.90821 1.62425 1.28623 1.61344 1.22228 0.94089 0.98283 1.05495 1.22945 0.92036 1.04040 0.99379 1.22972 1.01214 1.03122 0.91964 0.89687 0.90924 0.88945 0.90001 0.93430 0.92113 0.93103 0.95702 0.96425 0.94391 0.92325 0.86167 0.87638 0.87460 0.91309 0.88403 0.82367 0.91626 0.84309 0.84792 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 10.33 127.77 1.32 2.60 16 2 N -0.61 -19.08 2.81 -846.75 -2.38 -21.46 16 3 C 0.14 5.56 5.39 86.38 0.47 6.03 16 4 C 0.14 6.44 4.57 45.10 0.21 6.64 16 5 H 0.05 2.38 8.14 -2.39 -0.02 2.37 16 6 C -0.11 -5.60 7.30 31.25 0.23 -5.38 16 7 C 0.16 9.36 7.38 86.48 0.64 10.00 16 8 N -0.63 -36.46 3.57 -694.08 -2.48 -38.94 16 9 C -0.23 -14.10 10.51 84.03 0.88 -13.22 16 10 H 0.09 5.03 7.83 -2.91 -0.02 5.01 16 11 C -0.07 -4.57 5.50 84.86 0.47 -4.10 16 12 N -0.96 -63.63 11.55 21.65 0.25 -63.38 16 13 Si 0.98 48.98 29.55 68.60 2.03 51.01 16 14 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 16 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 17 C 0.50 16.97 5.40 87.66 0.47 17.44 16 18 O -0.56 -25.54 12.35 19.34 0.24 -25.31 16 19 C 0.11 2.48 2.91 44.72 0.13 2.61 16 20 H 0.12 1.96 5.99 -2.39 -0.01 1.94 16 21 C -0.12 -1.49 6.49 31.99 0.21 -1.29 16 22 C -0.12 -0.70 6.95 31.78 0.22 -0.48 16 23 C 0.09 1.06 6.36 86.73 0.55 1.61 16 24 N -0.61 -13.81 3.12 -792.26 -2.47 -16.28 16 25 C 0.54 16.05 7.05 87.66 0.62 16.66 16 26 O -0.56 -23.19 13.67 19.35 0.26 -22.92 16 27 C -0.18 -3.74 5.50 -11.54 -0.06 -3.81 16 28 C -0.15 -3.02 10.24 30.62 0.31 -2.71 16 29 C -0.16 -3.44 10.05 30.61 0.31 -3.13 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.09 1.22 5.74 -2.38 -0.01 1.21 16 33 H 0.08 2.98 8.11 -2.39 -0.02 2.96 16 34 H 0.05 2.34 7.26 -2.39 -0.02 2.32 16 35 H 0.06 3.47 6.69 -2.39 -0.02 3.45 16 36 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.02 1.60 7.44 -2.38 -0.02 1.58 16 38 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.06 1.07 8.05 -2.39 -0.02 1.05 16 41 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 45 H 0.10 0.58 7.96 -2.39 -0.02 0.56 16 46 H 0.16 1.92 7.74 -2.39 -0.02 1.90 16 47 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.14 1.77 8.14 -2.38 -0.02 1.75 16 49 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.07 2.14 7.67 -2.38 -0.02 2.12 16 Total: -1.00 -94.86 396.32 3.34 -91.52 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.92 Total: 16.29 kcal Atomic # 6 Polarization: 22.51 SS G_CDS: 6.97 Total: 29.48 kcal Atomic # 7 Polarization: -132.99 SS G_CDS: -7.08 Total: -140.07 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: 0.50 Total: -48.23 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.01 kcal Total: -94.86 3.34 -91.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085860158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.463 kcal (2) G-P(sol) polarization free energy of solvation -94.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds