Wall clock time and date at job start Tue Mar 31 2020 18:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99355 * 2 1 4 4 C 1.46891 * 111.00420 * 123.95560 * 2 1 3 5 5 C 1.50700 * 109.47259 * 165.21352 * 4 2 1 6 6 C 1.40361 * 126.64147 * 103.83702 * 5 4 2 7 7 C 1.35138 * 107.11180 * 180.02562 * 6 5 4 8 8 O 1.33928 * 108.76695 * 0.02562 * 7 6 5 9 9 C 1.34917 * 109.38559 * 359.72891 * 8 7 6 10 10 C 1.46660 * 125.99046 * 180.30987 * 9 8 7 11 11 O 1.21691 * 119.99616 * 174.88093 * 10 9 8 12 12 N 1.34776 * 119.99783 * 354.88568 * 10 9 8 13 13 C 1.46501 * 119.99879 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47343 * 180.02562 * 13 12 10 15 15 H 1.09004 * 110.43041 * 307.54087 * 14 13 12 16 16 C 1.54895 * 110.48498 * 70.22087 * 14 13 12 17 17 C 1.54898 * 102.74409 * 156.62288 * 16 14 13 18 18 C 1.54268 * 104.19765 * 322.05706 * 17 16 14 19 19 H 1.08996 * 110.07228 * 142.91561 * 18 17 16 20 20 N 1.46496 * 110.03467 * 264.32759 * 18 17 16 21 21 C 1.36931 * 119.99765 * 272.16808 * 20 18 17 22 22 H 1.08001 * 120.00414 * 359.97438 * 21 20 18 23 23 C 1.38818 * 119.99785 * 179.97438 * 21 20 18 24 24 N 1.31616 * 120.00169 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99839 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46944 * 60.00473 * 25 23 21 27 27 H 1.48496 * 109.46895 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47085 * 300.00335 * 25 23 21 29 29 C 1.53880 * 106.59451 * 23.61055 * 18 17 16 30 30 H 1.08992 * 109.47575 * 56.04696 * 1 2 3 31 31 H 1.09000 * 109.46799 * 296.04148 * 1 2 3 32 32 H 1.09002 * 109.46307 * 176.04804 * 1 2 3 33 33 H 1.08997 * 109.47019 * 65.13320 * 3 2 1 34 34 H 1.09002 * 109.46888 * 185.13212 * 3 2 1 35 35 H 1.09001 * 109.47713 * 305.13052 * 3 2 1 36 36 H 1.09004 * 109.47401 * 285.21409 * 4 2 1 37 37 H 1.09006 * 109.47275 * 45.21010 * 4 2 1 38 38 H 1.07994 * 126.45125 * 0.02562 * 6 5 4 39 39 H 1.08002 * 125.61731 * 180.02562 * 7 6 5 40 40 H 0.96995 * 119.99930 * 0.02562 * 12 10 9 41 41 H 1.09002 * 109.47069 * 300.00120 * 13 12 10 42 42 H 1.08992 * 109.47202 * 59.99512 * 13 12 10 43 43 H 1.08997 * 110.75890 * 274.93657 * 16 14 13 44 44 H 1.08995 * 110.75329 * 38.31174 * 16 14 13 45 45 H 1.08997 * 110.48127 * 203.38281 * 17 16 14 46 46 H 1.08996 * 110.60056 * 80.79529 * 17 16 14 47 47 H 0.96998 * 119.99926 * 92.16581 * 20 18 17 48 48 H 0.96999 * 119.99946 * 180.02562 * 24 23 21 49 49 H 1.08998 * 110.03059 * 240.71310 * 29 18 17 50 50 H 1.09011 * 110.02720 * 119.28591 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 3.4581 -1.0536 0.9155 6 6 4.5416 -0.4114 1.5350 7 6 5.6692 -0.9760 1.0490 8 8 5.3302 -1.9257 0.1676 9 6 3.9858 -1.9925 0.0762 10 6 3.2246 -2.9109 -0.7770 11 8 2.0102 -2.9420 -0.7059 12 7 3.8701 -3.7205 -1.6398 13 6 3.1097 -4.6375 -2.4925 14 6 4.0750 -5.4364 -3.3705 15 1 4.7491 -4.7654 -3.9029 16 6 4.8769 -6.4473 -2.5135 17 6 5.2951 -7.5186 -3.5511 18 6 4.0703 -7.6434 -4.4808 19 1 4.3957 -7.7974 -5.5096 20 7 3.2248 -8.7595 -4.0498 21 6 3.4673 -10.0229 -4.5189 22 1 4.2815 -10.1966 -5.2068 23 6 2.6664 -11.0805 -4.1101 24 7 1.6738 -10.8688 -3.2721 25 14 2.9967 -12.8040 -4.7505 26 1 4.3680 -13.2217 -4.3629 27 1 2.0083 -13.7465 -4.1676 28 1 2.8760 -12.8137 -6.2305 29 6 3.2946 -6.3195 -4.3658 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 0.4512 0.9233 32 1 -0.3632 -1.0253 -0.0708 33 1 1.7221 1.8655 0.9324 34 1 3.0812 1.3439 -0.0919 35 1 1.5735 1.9226 -0.8404 36 1 1.8741 -0.1869 2.0529 37 1 1.4499 -1.7054 1.2267 38 1 4.4850 0.3841 2.2631 39 1 6.6776 -0.7057 1.3257 40 1 4.8381 -3.6959 -1.6962 41 1 2.5355 -5.3222 -1.8683 42 1 2.4305 -4.0663 -3.1252 43 1 5.7539 -5.9715 -2.0747 44 1 4.2455 -6.8843 -1.7401 45 1 5.4977 -8.4690 -3.0575 46 1 6.1685 -7.1879 -4.1131 47 1 2.4933 -8.6034 -3.4322 48 1 1.1145 -11.6079 -2.9863 49 1 2.2891 -6.5074 -3.9894 50 1 3.2443 -5.8306 -5.3388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086788511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:21 Heat of formation + Delta-G solvation = -9.875705 kcal Electronic energy + Delta-G solvation = -28890.397149 eV Core-core repulsion = 24919.348267 eV Total energy + Delta-G solvation = -3971.048882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.96017 -39.52462 -38.08567 -37.59832 -34.91736 -33.57824 -33.17418 -30.97288 -30.28527 -28.93489 -27.75466 -27.66938 -27.00439 -24.55153 -23.22065 -22.86140 -22.31074 -21.27544 -20.26611 -19.60733 -19.13401 -18.18401 -17.06950 -16.67397 -16.37304 -16.15581 -15.42185 -15.38668 -15.19152 -14.89847 -14.76471 -14.57403 -14.22584 -13.70119 -13.41985 -13.27686 -13.19986 -13.15243 -12.70619 -12.60186 -12.44859 -12.15095 -11.97037 -11.84435 -11.70249 -11.37359 -11.16435 -10.79080 -10.70287 -10.55423 -10.45378 -10.24594 -10.19374 -10.14599 -10.05967 -9.86325 -9.58419 -9.13033 -8.84250 -8.78038 -8.51743 -6.89693 -5.72415 -3.00556 0.88583 2.04977 2.50064 3.12113 3.21491 3.46265 3.50725 3.51774 3.88674 4.41839 4.45884 4.62524 4.69166 4.92360 4.95789 5.01153 5.03020 5.12839 5.14904 5.17978 5.31342 5.36775 5.48037 5.58921 5.62178 5.62982 5.65860 5.72559 5.76906 5.80564 5.81216 5.95996 6.03651 6.05863 6.13060 6.17082 6.26248 6.39690 6.40486 6.51746 6.60044 6.70159 6.80437 6.81361 6.86328 6.95866 7.14711 7.46736 7.74238 8.11345 8.46957 9.57362 10.17402 10.51372 11.50177 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.002123 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.533029 B =13186.193780 C =13862.647073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.533 5.533 3 C 0.024 3.976 4 C 0.121 3.879 5 C -0.091 4.091 6 C -0.220 4.220 7 C -0.011 4.011 8 O -0.164 6.164 9 C -0.053 4.053 10 C 0.600 3.400 11 O -0.504 6.504 12 N -0.717 5.717 13 C 0.128 3.872 14 C -0.103 4.103 15 H 0.075 0.925 16 C -0.113 4.113 17 C -0.146 4.146 18 C 0.174 3.826 19 H 0.048 0.952 20 N -0.721 5.721 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 C -0.121 4.121 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.075 0.925 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.209 0.791 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.073 0.927 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.487 26.829 9.398 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.256 5.256 3 C -0.124 4.124 4 C -0.006 4.006 5 C -0.094 4.094 6 C -0.240 4.240 7 C -0.080 4.080 8 O -0.059 6.059 9 C -0.106 4.106 10 C 0.385 3.615 11 O -0.380 6.380 12 N -0.368 5.368 13 C 0.005 3.995 14 C -0.122 4.122 15 H 0.093 0.907 16 C -0.150 4.150 17 C -0.187 4.187 18 C 0.064 3.936 19 H 0.066 0.934 20 N -0.362 5.362 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.160 4.160 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.116 0.884 38 H 0.170 0.830 39 H 0.225 0.775 40 H 0.237 0.763 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.091 0.909 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.947 26.185 8.722 28.233 hybrid contribution 0.303 -0.280 0.827 0.925 sum 6.250 25.904 9.550 28.307 Atomic orbital electron populations 1.22356 0.86610 1.02965 0.99935 1.61813 1.08091 1.13074 1.42642 1.22419 1.00959 0.88986 1.00062 1.20509 0.89584 0.99424 0.91096 1.20364 0.96548 0.95661 0.96878 1.21701 0.91596 1.04903 1.05782 1.24282 1.00450 0.90709 0.92594 1.84081 1.22989 1.47923 1.50885 1.22047 0.80057 1.03513 1.04956 1.16468 0.86404 0.79233 0.79424 1.90876 1.11788 1.67658 1.67685 1.45949 1.10890 1.39912 1.40077 1.21578 0.94117 0.91343 0.92471 1.22238 0.96999 0.96551 0.96445 0.90705 1.22502 0.98558 0.96017 0.97959 1.23118 0.98860 0.98734 0.97958 1.20800 0.89974 0.86994 0.95840 0.93401 1.42536 1.35562 1.03201 1.54863 1.19213 1.11378 0.84997 1.21393 0.91301 1.24739 0.98236 0.97974 1.00090 1.69650 1.20559 1.31002 1.36932 0.86291 0.77136 0.84655 0.78242 1.21357 1.21762 1.21334 1.22464 0.99972 0.95832 0.97700 0.91451 0.96034 0.90601 0.95932 0.91551 0.91552 0.94023 0.88422 0.83012 0.77491 0.76330 0.90721 0.91281 0.92984 0.91283 0.90999 0.93351 0.78252 0.93503 0.90852 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.54 60.07 0.57 0.85 16 2 N -0.53 -5.73 4.97 -252.72 -1.26 -6.98 16 3 C 0.02 0.21 9.39 60.06 0.56 0.77 16 4 C 0.12 1.29 4.58 -4.98 -0.02 1.26 16 5 C -0.09 -0.98 4.89 -104.44 -0.51 -1.49 16 6 C -0.22 -1.76 10.56 -39.89 -0.42 -2.18 16 7 C -0.01 -0.08 12.08 29.63 0.36 0.28 16 8 O -0.16 -1.65 10.41 4.99 0.05 -1.60 16 9 C -0.05 -0.63 7.13 -36.80 -0.26 -0.89 16 10 C 0.60 8.27 7.78 -12.86 -0.10 8.17 16 11 O -0.50 -8.24 15.06 5.20 0.08 -8.16 16 12 N -0.72 -8.78 5.44 -61.63 -0.34 -9.12 16 13 C 0.13 1.71 4.96 -4.04 -0.02 1.69 16 14 C -0.10 -1.37 2.89 -88.96 -0.26 -1.63 16 15 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 16 C -0.11 -1.66 6.19 -24.73 -0.15 -1.81 16 17 C -0.15 -2.53 6.54 -25.07 -0.16 -2.70 16 18 C 0.17 3.40 3.55 -66.81 -0.24 3.16 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -17.92 5.08 -52.34 -0.27 -18.19 16 21 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 C -0.12 -1.93 6.14 -25.61 -0.16 -2.09 16 30 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 31 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.02 0.17 8.10 -51.93 -0.42 -0.25 16 34 H 0.07 0.58 7.26 -51.93 -0.38 0.20 16 35 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.04 0.37 8.04 -51.93 -0.42 -0.04 16 37 H 0.10 1.19 6.95 -51.93 -0.36 0.83 16 38 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.21 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.40 4.18 8.20 -40.82 -0.33 3.84 16 41 H 0.07 1.14 8.02 -51.93 -0.42 0.72 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 45 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.38 10.19 7.52 -40.82 -0.31 9.88 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 50 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 407.43 15.07 6.14 6.14 Total: -1.00 -32.67 407.43 -9.40 -42.06 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -8.45 Total: 9.86 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.06 Total: -3.88 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -1.13 Total: -61.93 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.13 Total: -9.76 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.67 -9.40 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086788511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.188 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds