Wall clock time and date at job start Tue Mar 31 2020 18:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00392 * 2 1 4 4 C 1.34783 * 119.99518 * 179.97438 * 2 1 3 5 5 O 1.21278 * 120.00401 * 359.97438 * 4 2 1 6 6 C 1.50707 * 119.99647 * 180.02562 * 4 2 1 7 7 H 1.08992 * 115.56010 * 306.07809 * 6 4 2 8 8 C 1.52995 * 117.49651 * 160.38653 * 6 4 2 9 9 C 1.52993 * 60.00232 * 252.51409 * 8 6 4 10 10 H 1.09006 * 117.49523 * 252.49161 * 9 8 6 11 11 C 1.50699 * 117.50247 * 107.49074 * 9 8 6 12 12 O 1.21280 * 119.99581 * 340.33241 * 11 9 8 13 13 N 1.34776 * 120.00000 * 160.32504 * 11 9 8 14 14 C 1.47649 * 125.72998 * 180.02562 * 13 11 9 15 15 C 1.55908 * 104.41640 * 154.97994 * 14 13 11 16 16 H 1.09002 * 112.88671 * 158.83562 * 15 14 13 17 17 C 1.53071 * 106.17605 * 283.25504 * 15 14 13 18 18 C 1.52284 * 110.88477 * 163.28461 * 17 15 14 19 19 N 1.47207 * 108.07028 * 302.49753 * 18 17 15 20 20 C 1.36941 * 121.32084 * 237.92988 * 19 18 17 21 21 H 1.07998 * 119.99714 * 28.67842 * 20 19 18 22 22 C 1.38806 * 119.99808 * 208.67290 * 20 19 18 23 23 N 1.31623 * 120.00173 * 21.67398 * 22 20 19 24 24 Si 1.86806 * 119.99989 * 201.67074 * 22 20 19 25 25 H 1.48501 * 109.47048 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.46837 * 300.00409 * 24 22 20 27 27 H 1.48503 * 109.46829 * 60.00326 * 24 22 20 28 28 C 1.46719 * 117.34848 * 57.66645 * 19 18 17 29 29 C 1.50973 * 111.05907 * 307.94545 * 28 19 18 30 30 H 1.09002 * 108.99001 * 167.68807 * 29 28 19 31 31 C 1.47455 * 125.73520 * 359.95158 * 13 11 9 32 32 H 1.09000 * 109.46990 * 270.00239 * 1 2 3 33 33 H 1.08999 * 109.46695 * 30.00161 * 1 2 3 34 34 H 1.09000 * 109.47045 * 150.00067 * 1 2 3 35 35 H 1.08998 * 109.47558 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46862 * 299.99670 * 3 2 1 37 37 H 1.08996 * 109.47569 * 59.99783 * 3 2 1 38 38 H 1.09004 * 117.49725 * 145.02153 * 8 6 4 39 39 H 1.09003 * 117.51978 * 359.97438 * 8 6 4 40 40 H 1.09000 * 110.44430 * 36.24732 * 14 13 11 41 41 H 1.08997 * 110.44301 * 273.71455 * 14 13 11 42 42 H 1.09001 * 109.21081 * 283.75606 * 17 15 14 43 43 H 1.09002 * 109.20560 * 43.07063 * 17 15 14 44 44 H 1.08995 * 109.68241 * 182.82434 * 18 17 15 45 45 H 1.09004 * 109.63785 * 62.14237 * 18 17 15 46 46 H 0.96996 * 119.99957 * 179.97438 * 23 22 20 47 47 H 1.09003 * 109.16271 * 68.35907 * 28 19 18 48 48 H 1.09007 * 109.15722 * 187.54499 * 28 19 18 49 49 H 1.08999 * 110.06226 * 61.35633 * 31 13 11 50 50 H 1.09002 * 110.05615 * 299.85423 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0015 6 6 3.6459 -1.1673 0.0011 7 1 4.1165 -0.5885 -0.7935 8 6 4.3521 -2.4456 0.4572 9 6 4.3517 -1.2089 1.3579 10 1 5.2870 -0.6576 1.4561 11 6 3.4868 -1.2466 2.5914 12 8 2.5740 -2.0414 2.6678 13 7 3.7278 -0.3972 3.6097 14 6 2.9643 -0.3249 4.8713 15 6 3.9686 0.2806 5.8987 16 1 3.4744 0.7328 6.7586 17 6 4.9217 -0.8539 6.2827 18 6 6.1772 -0.3062 6.9483 19 7 6.8122 0.6400 6.0165 20 6 8.1009 0.4615 5.5888 21 1 8.5156 -0.5336 5.5249 22 6 8.8738 1.5596 5.2374 23 7 8.5660 2.7547 5.6950 24 14 10.3510 1.3412 4.1150 25 1 11.0039 2.6566 3.8944 26 1 11.3187 0.4084 4.7463 27 1 9.9049 0.7848 2.8124 28 6 6.0076 1.7787 5.5596 29 6 4.6795 1.3182 5.0088 30 1 4.0278 2.1831 4.8850 31 6 4.7993 0.6150 3.6516 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5138 35 1 3.2692 1.0695 -0.0005 36 1 1.9343 1.8401 -0.8900 37 1 1.9343 1.8403 0.8899 38 1 5.2874 -2.7078 -0.0374 39 1 3.7270 -3.2867 0.7574 40 1 2.6526 -1.3211 5.1853 41 1 2.0985 0.3271 4.7555 42 1 4.4152 -1.5302 6.9714 43 1 5.2052 -1.4034 5.3851 44 1 6.8630 -1.1245 7.1679 45 1 5.9081 0.2085 7.8707 46 1 9.1064 3.5219 5.4497 47 1 5.8329 2.4527 6.3982 48 1 6.5525 2.3120 4.7805 49 1 4.6652 1.3351 2.8444 50 1 5.7729 0.1325 3.5649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088107548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:40 Heat of formation + Delta-G solvation = -5.748136 kcal Electronic energy + Delta-G solvation = -31109.438013 eV Core-core repulsion = 27138.568115 eV Total energy + Delta-G solvation = -3970.869897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.74315 -39.75666 -38.25451 -36.01860 -35.49505 -35.17850 -32.66674 -30.90661 -30.61353 -28.59727 -27.67860 -26.65974 -25.77403 -24.74035 -23.35595 -22.84473 -21.65156 -21.16851 -19.62036 -18.69832 -18.34788 -17.80357 -16.87850 -16.37355 -16.13714 -15.88338 -15.61649 -14.91800 -14.82808 -14.58421 -14.14705 -13.74221 -13.65294 -13.53760 -13.23860 -13.03614 -12.91964 -12.73675 -12.68542 -12.46175 -12.25681 -12.18834 -12.04326 -11.81819 -11.74902 -11.18886 -11.10463 -10.82298 -10.78966 -10.71642 -10.60725 -10.52418 -10.31032 -9.99057 -9.89602 -9.61726 -9.51175 -9.46988 -8.80852 -8.54755 -8.34155 -6.75001 -5.89216 -3.28861 2.28069 2.78028 2.83748 3.14543 3.31581 3.38659 3.39578 3.81212 4.30918 4.42361 4.50374 4.62910 4.73101 4.90246 4.95546 4.97542 5.10612 5.13378 5.14379 5.18479 5.28548 5.40890 5.43334 5.48588 5.51217 5.58827 5.61684 5.67629 5.73697 5.84748 5.89688 6.03142 6.03822 6.09662 6.25339 6.31646 6.37969 6.43096 6.51392 6.62984 6.65452 6.79633 6.95524 7.14200 7.20849 7.41885 7.73761 7.75491 8.14696 8.34732 8.36384 9.11564 9.75199 10.36688 11.19756 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.003721 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.245208 B = 7522.638832 C = 8243.495755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.622 5.622 3 C 0.078 3.922 4 C 0.546 3.454 5 O -0.518 6.518 6 C -0.164 4.164 7 H 0.135 0.865 8 C -0.112 4.112 9 C -0.166 4.166 10 H 0.133 0.867 11 C 0.550 3.450 12 O -0.535 6.535 13 N -0.608 5.608 14 C 0.109 3.891 15 C -0.086 4.086 16 H 0.091 0.909 17 C -0.126 4.126 18 C 0.143 3.857 19 N -0.587 5.587 20 C -0.255 4.255 21 H 0.064 0.936 22 C 0.009 3.991 23 N -0.896 5.896 24 Si 0.895 3.105 25 H -0.291 1.291 26 H -0.282 1.282 27 H -0.283 1.283 28 C 0.181 3.819 29 C -0.111 4.111 30 H 0.063 0.937 31 C 0.110 3.890 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.255 0.745 47 H 0.026 0.974 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 -0.591 -9.594 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.357 5.357 3 C -0.066 4.066 4 C 0.333 3.667 5 O -0.392 6.392 6 C -0.186 4.186 7 H 0.152 0.848 8 C -0.150 4.150 9 C -0.188 4.188 10 H 0.151 0.849 11 C 0.338 3.662 12 O -0.412 6.412 13 N -0.341 5.341 14 C -0.013 4.013 15 C -0.105 4.105 16 H 0.109 0.891 17 C -0.166 4.166 18 C 0.017 3.983 19 N -0.309 5.309 20 C -0.385 4.385 21 H 0.082 0.918 22 C -0.191 4.191 23 N -0.539 5.539 24 Si 0.725 3.275 25 H -0.216 1.216 26 H -0.208 1.208 27 H -0.210 1.210 28 C 0.054 3.946 29 C -0.132 4.132 30 H 0.081 0.919 31 C -0.012 4.012 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.140 -1.465 -9.639 15.571 hybrid contribution 0.901 0.429 -0.549 1.139 sum -11.239 -1.036 -10.189 15.205 Atomic orbital electron populations 1.21558 0.79155 1.02698 1.01877 1.47589 1.06999 1.06305 1.74783 1.21825 0.97674 0.85226 1.01830 1.19509 0.88209 0.83243 0.75712 1.90685 1.69570 1.30986 1.47956 1.22202 0.92493 1.05758 0.98139 0.84756 1.23033 1.01824 0.91480 0.98669 1.22384 1.01228 1.06114 0.89033 0.84915 1.19128 0.84126 0.80006 0.82969 1.90760 1.31777 1.38173 1.80478 1.48535 1.32989 1.35786 1.16776 1.22560 0.94087 1.01065 0.83585 1.22307 0.95290 0.96372 0.96579 0.89088 1.21882 0.97338 0.96465 1.00878 1.20795 0.92406 0.93363 0.91759 1.43952 1.10412 1.26962 1.49598 1.19043 0.88322 0.92059 1.39037 0.91808 1.24998 0.97379 0.96082 1.00612 1.70081 1.40901 0.99104 1.43830 0.86488 0.82772 0.76839 0.81442 1.21648 1.20826 1.20996 1.20034 0.87001 0.89458 0.98068 1.22074 1.00887 0.96851 0.93367 0.91898 1.22063 0.91127 0.89865 0.98113 0.92882 0.91421 0.90649 0.90100 0.92046 0.92040 0.86814 0.86452 0.90897 0.92391 0.93252 0.92071 0.92718 0.96185 0.93553 0.95644 0.90133 0.92334 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.48 59.85 0.63 1.57 16 2 N -0.62 -7.42 3.27 -189.52 -0.62 -8.04 16 3 C 0.08 0.66 10.61 59.84 0.63 1.30 16 4 C 0.55 7.99 5.74 -10.98 -0.06 7.92 16 5 O -0.52 -9.59 15.59 0.09 0.00 -9.59 16 6 C -0.16 -1.95 4.36 -91.77 -0.40 -2.35 16 7 H 0.13 1.14 7.64 -51.93 -0.40 0.75 16 8 C -0.11 -1.39 9.55 -26.74 -0.26 -1.65 16 9 C -0.17 -2.19 5.78 -91.78 -0.53 -2.72 16 10 H 0.13 1.57 7.25 -51.93 -0.38 1.20 16 11 C 0.55 9.09 7.10 -10.99 -0.08 9.01 16 12 O -0.53 -10.70 15.18 0.08 0.00 -10.70 16 13 N -0.61 -9.50 2.85 -169.97 -0.48 -9.98 16 14 C 0.11 1.64 6.18 -1.86 -0.01 1.63 16 15 C -0.09 -1.31 3.72 -88.47 -0.33 -1.64 16 16 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 17 C -0.13 -2.12 4.95 -27.06 -0.13 -2.25 16 18 C 0.14 2.82 6.49 -4.02 -0.03 2.79 16 19 N -0.59 -13.40 2.87 -174.13 -0.50 -13.90 16 20 C -0.26 -6.51 9.61 -15.06 -0.14 -6.65 16 21 H 0.06 1.63 7.92 -52.49 -0.42 1.22 16 22 C 0.01 0.23 4.79 -17.43 -0.08 0.15 16 23 N -0.90 -24.32 11.64 55.49 0.65 -23.68 16 24 Si 0.90 20.30 29.61 -169.99 -5.03 15.27 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.18 3.79 4.68 -4.94 -0.02 3.77 16 29 C -0.11 -1.81 2.70 -90.91 -0.25 -2.06 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 C 0.11 1.71 5.09 -3.35 -0.02 1.70 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.07 0.87 7.42 -51.93 -0.39 0.48 16 35 H 0.08 0.65 5.89 -51.93 -0.31 0.34 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.12 1.76 7.48 -51.93 -0.39 1.38 16 40 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.13 7.13 -51.93 -0.37 0.76 16 44 H 0.05 1.09 7.96 -51.93 -0.41 0.67 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.08 1.88 6.35 -51.93 -0.33 1.55 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.08 1.52 7.77 -51.93 -0.40 1.12 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -32.75 390.80 -9.58 -42.33 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.40 Total: 1.90 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.08 Total: 10.50 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.96 Total: -55.59 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.00 Total: -20.29 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.75 -9.58 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088107548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.579 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds