Wall clock time and date at job start Tue Mar 31 2020 18:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00392 * 2 1 4 4 C 1.34783 * 119.99518 * 179.97438 * 2 1 3 5 5 O 1.21278 * 120.00401 * 359.97438 * 4 2 1 6 6 C 1.50707 * 119.99647 * 180.02562 * 4 2 1 7 7 H 1.08992 * 115.56010 * 306.07809 * 6 4 2 8 8 C 1.52995 * 117.49651 * 160.38653 * 6 4 2 9 9 C 1.52993 * 60.00232 * 252.51409 * 8 6 4 10 10 H 1.09006 * 117.49523 * 252.49161 * 9 8 6 11 11 C 1.50699 * 117.50247 * 107.49074 * 9 8 6 12 12 O 1.21280 * 119.99581 * 340.33241 * 11 9 8 13 13 N 1.34776 * 120.00000 * 160.32504 * 11 9 8 14 14 C 1.47649 * 125.72998 * 180.02562 * 13 11 9 15 15 C 1.55908 * 104.41640 * 154.97994 * 14 13 11 16 16 H 1.09002 * 112.88671 * 158.83562 * 15 14 13 17 17 C 1.53071 * 106.17605 * 283.25504 * 15 14 13 18 18 C 1.52284 * 110.88477 * 163.28461 * 17 15 14 19 19 N 1.47207 * 108.07028 * 302.49753 * 18 17 15 20 20 C 1.36941 * 121.32084 * 237.92988 * 19 18 17 21 21 H 1.07998 * 119.99714 * 28.67842 * 20 19 18 22 22 C 1.38806 * 119.99808 * 208.67290 * 20 19 18 23 23 N 1.31623 * 120.00173 * 21.67398 * 22 20 19 24 24 Si 1.86806 * 119.99989 * 201.67074 * 22 20 19 25 25 H 1.48501 * 109.47048 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.46837 * 300.00409 * 24 22 20 27 27 H 1.48503 * 109.46829 * 60.00326 * 24 22 20 28 28 C 1.46719 * 117.34848 * 57.66645 * 19 18 17 29 29 C 1.50973 * 111.05907 * 307.94545 * 28 19 18 30 30 H 1.09002 * 108.99001 * 167.68807 * 29 28 19 31 31 C 1.47455 * 125.73520 * 359.95158 * 13 11 9 32 32 H 1.09000 * 109.46990 * 270.00239 * 1 2 3 33 33 H 1.08999 * 109.46695 * 30.00161 * 1 2 3 34 34 H 1.09000 * 109.47045 * 150.00067 * 1 2 3 35 35 H 1.08998 * 109.47558 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46862 * 299.99670 * 3 2 1 37 37 H 1.08996 * 109.47569 * 59.99783 * 3 2 1 38 38 H 1.09004 * 117.49725 * 145.02153 * 8 6 4 39 39 H 1.09003 * 117.51978 * 359.97438 * 8 6 4 40 40 H 1.09000 * 110.44430 * 36.24732 * 14 13 11 41 41 H 1.08997 * 110.44301 * 273.71455 * 14 13 11 42 42 H 1.09001 * 109.21081 * 283.75606 * 17 15 14 43 43 H 1.09002 * 109.20560 * 43.07063 * 17 15 14 44 44 H 1.08995 * 109.68241 * 182.82434 * 18 17 15 45 45 H 1.09004 * 109.63785 * 62.14237 * 18 17 15 46 46 H 0.96996 * 119.99957 * 179.97438 * 23 22 20 47 47 H 1.09003 * 109.16271 * 68.35907 * 28 19 18 48 48 H 1.09007 * 109.15722 * 187.54499 * 28 19 18 49 49 H 1.08999 * 110.06226 * 61.35633 * 31 13 11 50 50 H 1.09002 * 110.05615 * 299.85423 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0015 6 6 3.6459 -1.1673 0.0011 7 1 4.1165 -0.5885 -0.7935 8 6 4.3521 -2.4456 0.4572 9 6 4.3517 -1.2089 1.3579 10 1 5.2870 -0.6576 1.4561 11 6 3.4868 -1.2466 2.5914 12 8 2.5740 -2.0414 2.6678 13 7 3.7278 -0.3972 3.6097 14 6 2.9643 -0.3249 4.8713 15 6 3.9686 0.2806 5.8987 16 1 3.4744 0.7328 6.7586 17 6 4.9217 -0.8539 6.2827 18 6 6.1772 -0.3062 6.9483 19 7 6.8122 0.6400 6.0165 20 6 8.1009 0.4615 5.5888 21 1 8.5156 -0.5336 5.5249 22 6 8.8738 1.5596 5.2374 23 7 8.5660 2.7547 5.6950 24 14 10.3510 1.3412 4.1150 25 1 11.0039 2.6566 3.8944 26 1 11.3187 0.4084 4.7463 27 1 9.9049 0.7848 2.8124 28 6 6.0076 1.7787 5.5596 29 6 4.6795 1.3182 5.0088 30 1 4.0278 2.1831 4.8850 31 6 4.7993 0.6150 3.6516 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5138 35 1 3.2692 1.0695 -0.0005 36 1 1.9343 1.8401 -0.8900 37 1 1.9343 1.8403 0.8899 38 1 5.2874 -2.7078 -0.0374 39 1 3.7270 -3.2867 0.7574 40 1 2.6526 -1.3211 5.1853 41 1 2.0985 0.3271 4.7555 42 1 4.4152 -1.5302 6.9714 43 1 5.2052 -1.4034 5.3851 44 1 6.8630 -1.1245 7.1679 45 1 5.9081 0.2085 7.8707 46 1 9.1064 3.5219 5.4497 47 1 5.8329 2.4527 6.3982 48 1 6.5525 2.3120 4.7805 49 1 4.6652 1.3351 2.8444 50 1 5.7729 0.1325 3.5649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088107548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:39 Heat of formation + Delta-G solvation = -25.359587 kcal Electronic energy + Delta-G solvation = -31110.288429 eV Core-core repulsion = 27138.568115 eV Total energy + Delta-G solvation = -3971.720314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90296 -40.96336 -39.55086 -37.16626 -36.68408 -36.52512 -34.32323 -32.36776 -32.24825 -29.43031 -29.10895 -27.53982 -27.29435 -26.16960 -24.49370 -24.04916 -23.14576 -22.54714 -20.70679 -20.11872 -19.52819 -18.91764 -18.50112 -17.49876 -17.27228 -17.07605 -16.85433 -16.50583 -15.94964 -15.69765 -15.62758 -15.28587 -15.13305 -14.83033 -14.50875 -14.29878 -14.06589 -13.89432 -13.72560 -13.47653 -13.44687 -13.33665 -13.20434 -13.04742 -12.87226 -12.80110 -12.73885 -12.46297 -12.30648 -12.07176 -12.01442 -11.74149 -11.69874 -11.59048 -11.08745 -11.02434 -10.99633 -10.81223 -10.47075 -9.72407 -9.62444 -8.61503 -7.84212 -5.25934 1.16135 1.51876 1.54045 1.60508 1.66359 1.86213 2.04458 2.56343 2.80402 3.24854 3.33406 3.49123 3.64489 3.66488 3.69798 3.74549 3.82823 3.92759 4.14260 4.27549 4.29979 4.36068 4.41375 4.44017 4.53386 4.59292 4.66956 4.67394 4.71038 4.74175 4.77558 4.83440 4.88031 4.90158 4.96158 5.02064 5.09421 5.14201 5.17787 5.19225 5.35424 5.42306 5.47836 5.55442 5.69767 5.76088 6.28874 6.42860 6.49514 7.10100 7.14336 7.20481 7.90056 8.46971 9.22311 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.003721 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.245208 B = 7522.638832 C = 8243.495755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.622 5.622 3 C 0.071 3.929 4 C 0.532 3.468 5 O -0.571 6.571 6 C -0.149 4.149 7 H 0.178 0.822 8 C -0.116 4.116 9 C -0.171 4.171 10 H 0.152 0.848 11 C 0.544 3.456 12 O -0.576 6.576 13 N -0.606 5.606 14 C 0.113 3.887 15 C -0.079 4.079 16 H 0.112 0.888 17 C -0.115 4.115 18 C 0.141 3.859 19 N -0.603 5.603 20 C -0.262 4.262 21 H 0.057 0.943 22 C -0.034 4.034 23 N -0.925 5.925 24 Si 0.953 3.047 25 H -0.295 1.295 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.193 3.807 29 C -0.106 4.106 30 H 0.088 0.912 31 C 0.120 3.880 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.045 0.955 45 H 0.021 0.979 46 H 0.251 0.749 47 H 0.003 0.997 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 0.609 -11.031 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.355 5.355 3 C -0.071 4.071 4 C 0.320 3.680 5 O -0.450 6.450 6 C -0.170 4.170 7 H 0.195 0.805 8 C -0.153 4.153 9 C -0.192 4.192 10 H 0.170 0.830 11 C 0.333 3.667 12 O -0.457 6.457 13 N -0.338 5.338 14 C -0.010 4.010 15 C -0.098 4.098 16 H 0.130 0.870 17 C -0.154 4.154 18 C 0.016 3.984 19 N -0.326 5.326 20 C -0.392 4.392 21 H 0.075 0.925 22 C -0.231 4.231 23 N -0.570 5.570 24 Si 0.781 3.219 25 H -0.221 1.221 26 H -0.210 1.210 27 H -0.198 1.198 28 C 0.067 3.933 29 C -0.127 4.127 30 H 0.106 0.894 31 C -0.002 4.002 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.167 0.833 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.060 0.940 47 H 0.021 0.979 48 H 0.073 0.927 49 H 0.103 0.897 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.277 -0.229 -11.068 16.531 hybrid contribution 0.912 0.049 0.000 0.913 sum -11.364 -0.180 -11.068 15.865 Atomic orbital electron populations 1.21645 0.78788 1.03658 1.01491 1.47799 1.07657 1.06847 1.73167 1.22087 0.97904 0.83777 1.03332 1.20085 0.89471 0.83266 0.75130 1.90658 1.70762 1.32965 1.50612 1.22364 0.90907 1.05596 0.98139 0.80527 1.23099 1.02889 0.90538 0.98805 1.22388 1.01453 1.07264 0.88108 0.83040 1.19700 0.83885 0.79213 0.83867 1.90750 1.33746 1.39778 1.81400 1.48577 1.32785 1.35573 1.16835 1.22555 0.94389 1.00855 0.83165 1.22315 0.94858 0.95391 0.97246 0.86996 1.21722 0.96367 0.97142 1.00146 1.20877 0.93369 0.92574 0.91629 1.44178 1.10150 1.27775 1.50494 1.19242 0.89557 0.91806 1.38621 0.92541 1.25591 0.99803 0.95818 1.01854 1.70199 1.42096 0.99597 1.45142 0.85577 0.79861 0.76278 0.80151 1.22100 1.21033 1.19772 1.19823 0.88542 0.88495 0.96467 1.21888 0.98638 0.98225 0.93926 0.89388 1.21928 0.89886 0.89889 0.98453 0.93947 0.87750 0.92377 0.89221 0.89272 0.91762 0.83350 0.89851 0.91904 0.90671 0.91201 0.93932 0.93589 0.96078 0.94010 0.97873 0.92726 0.89673 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.72 10.48 127.77 1.34 3.06 16 2 N -0.62 -13.68 3.27 -871.90 -2.85 -16.54 16 3 C 0.07 0.96 10.61 127.77 1.36 2.31 16 4 C 0.53 15.10 5.74 87.66 0.50 15.60 16 5 O -0.57 -21.75 15.59 2.21 0.03 -21.71 16 6 C -0.15 -3.18 4.36 -11.54 -0.05 -3.23 16 7 H 0.18 2.21 7.64 -2.39 -0.02 2.19 16 8 C -0.12 -2.71 9.55 30.59 0.29 -2.42 16 9 C -0.17 -4.18 5.78 -11.54 -0.07 -4.25 16 10 H 0.15 3.13 7.25 -2.38 -0.02 3.11 16 11 C 0.54 17.48 7.10 87.66 0.62 18.10 16 12 O -0.58 -23.33 15.18 2.20 0.03 -23.30 16 13 N -0.61 -17.89 2.85 -810.06 -2.31 -20.20 16 14 C 0.11 3.14 6.18 87.17 0.54 3.68 16 15 C -0.08 -2.23 3.72 -9.40 -0.03 -2.27 16 16 H 0.11 2.75 8.14 -2.39 -0.02 2.74 16 17 C -0.11 -3.70 4.95 30.38 0.15 -3.55 16 18 C 0.14 5.51 6.49 86.01 0.56 6.07 16 19 N -0.60 -27.55 2.87 -704.83 -2.03 -29.58 16 20 C -0.26 -13.44 9.61 84.03 0.81 -12.63 16 21 H 0.06 2.92 7.92 -2.91 -0.02 2.90 16 22 C -0.03 -1.75 4.79 84.86 0.41 -1.34 16 23 N -0.93 -50.68 11.64 21.65 0.25 -50.43 16 24 Si 0.95 41.53 29.61 68.60 2.03 43.56 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 C 0.19 8.00 4.68 85.68 0.40 8.40 16 29 C -0.11 -3.26 2.70 -10.98 -0.03 -3.29 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 C 0.12 3.48 5.09 86.31 0.44 3.92 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.06 1.35 7.42 -2.39 -0.02 1.34 16 35 H 0.09 1.06 5.89 -2.39 -0.01 1.05 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.15 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.08 2.58 7.48 -2.39 -0.02 2.56 16 40 H 0.06 1.91 7.87 -2.39 -0.02 1.89 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.54 7.13 -2.39 -0.02 1.52 16 44 H 0.05 1.83 7.96 -2.39 -0.02 1.82 16 45 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 47 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.05 2.54 6.35 -2.38 -0.02 2.53 16 49 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.06 2.10 7.77 -2.39 -0.02 2.08 16 Total: -1.00 -74.37 390.80 3.31 -71.06 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.92 Total: 18.97 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 7.23 Total: 28.16 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.94 Total: -116.74 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: 0.07 Total: -45.01 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -74.37 3.31 -71.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088107548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.696 kcal (2) G-P(sol) polarization free energy of solvation -74.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds