Wall clock time and date at job start Tue Mar 31 2020 18:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00370 * 2 1 4 4 C 1.34784 * 119.99296 * 179.97438 * 2 1 3 5 5 O 1.21277 * 120.00054 * 0.02562 * 4 2 1 6 6 C 1.50701 * 119.99655 * 179.97438 * 4 2 1 7 7 H 1.09000 * 115.55340 * 308.89280 * 6 4 2 8 8 C 1.53005 * 117.49790 * 163.22124 * 6 4 2 9 9 C 1.53004 * 117.49550 * 94.56469 * 6 4 2 10 10 H 1.09007 * 117.49596 * 215.02425 * 9 6 4 11 11 C 1.50694 * 117.50081 * 0.02562 * 9 6 4 12 12 O 1.21280 * 120.00370 * 87.26783 * 11 9 6 13 13 N 1.34784 * 120.00011 * 267.27156 * 11 9 6 14 14 C 1.46505 * 119.99715 * 179.97438 * 13 11 9 15 15 C 1.54320 * 111.69258 * 298.98169 * 14 13 11 16 16 C 1.55050 * 103.93905 * 262.78944 * 15 14 13 17 17 C 1.55049 * 102.11042 * 319.94742 * 16 15 14 18 18 C 1.54326 * 103.93943 * 40.05768 * 17 16 15 19 19 H 1.08998 * 111.01885 * 96.80845 * 18 17 16 20 20 C 1.53780 * 109.79079 * 221.69513 * 18 17 16 21 21 N 1.47209 * 106.38430 * 95.21212 * 20 18 17 22 22 C 1.36937 * 126.70296 * 211.28734 * 21 20 18 23 23 H 1.08001 * 119.99351 * 179.97438 * 22 21 20 24 24 C 1.38808 * 119.99961 * 359.96891 * 22 21 20 25 25 N 1.31613 * 120.00247 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99725 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47170 * 60.00257 * 26 24 22 28 28 H 1.48500 * 109.47011 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47029 * 300.00185 * 26 24 22 30 30 C 1.48669 * 107.09180 * 30.74097 * 21 20 18 31 31 H 1.08997 * 109.47608 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47073 * 300.00616 * 1 2 3 33 33 H 1.09003 * 109.47072 * 59.99640 * 1 2 3 34 34 H 1.09006 * 109.47128 * 269.99839 * 3 2 1 35 35 H 1.09002 * 109.47424 * 30.00378 * 3 2 1 36 36 H 1.09005 * 109.47048 * 150.00035 * 3 2 1 37 37 H 1.08998 * 117.49400 * 359.97438 * 8 6 4 38 38 H 1.08995 * 117.49480 * 145.00236 * 8 6 4 39 39 H 0.96992 * 119.99984 * 359.97438 * 13 11 9 40 40 H 1.09003 * 110.53163 * 21.40607 * 15 14 13 41 41 H 1.09003 * 110.53045 * 144.17118 * 15 14 13 42 42 H 1.09003 * 110.90042 * 78.15056 * 16 15 14 43 43 H 1.08995 * 110.90209 * 201.74539 * 16 15 14 44 44 H 1.09005 * 110.53651 * 158.67213 * 17 16 15 45 45 H 1.09007 * 110.53658 * 281.30191 * 17 16 15 46 46 H 1.08997 * 110.07156 * 214.44360 * 20 18 17 47 47 H 1.09001 * 110.07231 * 335.97967 * 20 18 17 48 48 H 0.97001 * 120.00145 * 179.97438 * 25 24 22 49 49 H 1.09007 * 110.91470 * 210.52613 * 30 21 20 50 50 H 1.09004 * 109.94868 * 88.51947 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1387 -1.1673 0.0005 5 8 1.5322 -2.2176 0.0005 6 6 3.6458 -1.1674 -0.0001 7 1 4.1157 -0.5505 -0.7660 8 6 4.3523 -2.4666 0.3923 9 6 4.3527 -1.2746 1.3526 10 1 5.2875 -0.7278 1.4767 11 6 3.4887 -1.3725 2.5834 12 8 3.1003 -2.4555 2.9672 13 7 3.1475 -0.2566 3.2579 14 6 2.3071 -0.3518 4.4541 15 6 0.9266 -0.9628 4.1342 16 6 0.0020 0.2705 3.9669 17 6 0.4971 1.2045 5.1011 18 6 2.0313 1.0401 5.0749 19 1 2.5004 1.8391 4.5009 20 6 2.5707 0.9573 6.5127 21 7 2.6854 -0.4754 6.8312 22 6 2.5369 -1.0543 8.0633 23 1 2.6445 -2.1232 8.1741 24 6 2.2482 -0.2672 9.1697 25 7 2.1167 1.0353 9.0345 26 14 2.0463 -1.0570 10.8505 27 1 3.3032 -1.7538 11.2241 28 1 1.7433 -0.0080 11.8570 29 1 0.9313 -2.0368 10.8063 30 6 2.9810 -1.1838 5.5580 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.3792 1.5832 -1.0277 35 1 1.6085 2.0283 0.5139 36 1 3.1500 1.1382 0.5139 37 1 3.7270 -3.3211 0.6513 38 1 5.2869 -2.7043 -0.1155 39 1 3.4583 0.6095 2.9512 40 1 0.9682 -1.5380 3.2092 41 1 0.5848 -1.5880 4.9592 42 1 0.1451 0.7342 2.9908 43 1 -1.0424 -0.0033 4.1166 44 1 0.2197 2.2381 4.8937 45 1 0.0926 0.8867 6.0621 46 1 3.5492 1.4335 6.5731 47 1 1.8764 1.4392 7.2010 48 1 1.9146 1.5852 9.8076 49 1 2.5695 -2.1931 5.5697 50 1 4.0581 -1.2203 5.3941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099031509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:43 Heat of formation + Delta-G solvation = -7.196734 kcal Electronic energy + Delta-G solvation = -31670.671868 eV Core-core repulsion = 27699.739155 eV Total energy + Delta-G solvation = -3970.932713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.80213 -39.72319 -38.23999 -36.03735 -35.59120 -34.34221 -33.33557 -31.36633 -29.43008 -28.64509 -27.87077 -26.77829 -24.99398 -24.62800 -23.85329 -23.15458 -20.92367 -20.53987 -19.75042 -18.87095 -18.76875 -17.74604 -17.03678 -16.43507 -16.27767 -15.78524 -15.56864 -15.09943 -14.73083 -14.49954 -14.13913 -13.74764 -13.49874 -13.44458 -13.24125 -13.16154 -13.02528 -12.79128 -12.73466 -12.51959 -12.25056 -12.01363 -11.84152 -11.29067 -11.02047 -10.92845 -10.84588 -10.81037 -10.63010 -10.53467 -10.30028 -10.23104 -10.04954 -9.98291 -9.94268 -9.91674 -9.66346 -9.36702 -8.88412 -8.72125 -8.56971 -6.83921 -5.62086 -3.05779 2.27073 2.72294 2.77090 3.26071 3.42979 3.46712 3.48438 3.65441 4.23027 4.47403 4.50482 4.58790 4.74135 4.83271 4.92004 5.04250 5.09626 5.15348 5.16441 5.33088 5.37123 5.40944 5.42364 5.51458 5.55635 5.63426 5.69274 5.86445 5.90791 6.00564 6.01617 6.12448 6.14271 6.23156 6.28413 6.36508 6.42060 6.57775 6.67200 6.81059 6.87044 6.96061 7.10922 7.15965 7.42541 7.63327 7.77867 7.85887 8.01068 8.40408 8.51831 9.23927 9.83046 10.50515 11.39255 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.003637 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.741046 B = 7697.827120 C = 8328.637733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.615 5.615 3 C 0.080 3.920 4 C 0.540 3.460 5 O -0.524 6.524 6 C -0.172 4.172 7 H 0.133 0.867 8 C -0.114 4.114 9 C -0.166 4.166 10 H 0.135 0.865 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.705 5.705 14 C 0.161 3.839 15 C -0.110 4.110 16 C -0.122 4.122 17 C -0.108 4.108 18 C -0.111 4.111 19 H 0.067 0.933 20 C 0.143 3.857 21 N -0.594 5.594 22 C -0.214 4.214 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.924 5.924 26 Si 0.915 3.085 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.138 3.862 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.392 0.608 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.003 0.997 47 H 0.129 0.871 48 H 0.252 0.748 49 H 0.052 0.948 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 4.839 -21.168 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.350 5.350 3 C -0.063 4.063 4 C 0.327 3.673 5 O -0.399 6.399 6 C -0.193 4.193 7 H 0.151 0.849 8 C -0.151 4.151 9 C -0.188 4.188 10 H 0.153 0.847 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.355 5.355 14 C 0.075 3.925 15 C -0.149 4.149 16 C -0.160 4.160 17 C -0.146 4.146 18 C -0.131 4.131 19 H 0.085 0.915 20 C 0.017 3.983 21 N -0.319 5.319 22 C -0.342 4.342 23 H 0.095 0.905 24 C -0.207 4.207 25 N -0.574 5.574 26 Si 0.745 3.255 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.011 3.989 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.021 0.979 47 H 0.146 0.854 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.785 3.531 -20.606 20.921 hybrid contribution 0.327 0.398 0.564 0.764 sum 1.111 3.929 -20.042 20.453 Atomic orbital electron populations 1.21708 0.78978 1.04310 1.01239 1.47532 1.07090 1.06145 1.74186 1.21778 0.97461 0.85374 1.01706 1.19635 0.88406 0.83400 0.75844 1.90724 1.69580 1.31033 1.48557 1.22272 0.92328 1.05671 0.99067 0.84921 1.23021 1.01856 0.92006 0.98230 1.22433 1.01028 1.06334 0.88981 0.84724 1.19438 0.80363 0.84697 0.83708 1.90742 1.53411 1.27452 1.67577 1.45993 1.52547 1.08445 1.28558 1.21822 0.90074 0.96956 0.83684 1.22624 0.93400 0.97012 1.01860 1.22582 0.98731 0.96665 0.97996 1.22433 0.94709 0.98100 0.99334 1.23007 0.96513 0.93542 1.00060 0.91509 1.21969 0.99302 0.86409 0.90588 1.44784 1.82498 1.02341 1.02245 1.19087 1.39978 0.92061 0.83086 0.90472 1.24727 1.02494 0.95566 0.97921 1.69567 1.56074 1.03182 1.28540 0.86137 0.77994 0.77849 0.83475 1.21274 1.21588 1.21175 1.21822 0.96125 0.95232 0.85682 0.89586 0.91875 0.92418 0.92579 0.90705 0.90964 0.86305 0.87006 0.77393 0.91778 0.90587 0.92758 0.92289 0.92662 0.90210 0.97935 0.85351 0.93692 0.92928 0.96629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.68 59.84 0.64 1.41 16 2 N -0.62 -6.18 3.27 -189.52 -0.62 -6.80 16 3 C 0.08 0.50 10.24 59.84 0.61 1.12 16 4 C 0.54 6.91 6.42 -10.98 -0.07 6.84 16 5 O -0.52 -9.03 15.72 5.56 0.09 -8.94 16 6 C -0.17 -1.65 4.37 -91.77 -0.40 -2.05 16 7 H 0.13 0.81 8.04 -51.93 -0.42 0.39 16 8 C -0.11 -1.21 9.55 -26.69 -0.25 -1.46 16 9 C -0.17 -1.77 6.10 -91.73 -0.56 -2.33 16 10 H 0.14 1.02 8.14 -51.92 -0.42 0.60 16 11 C 0.53 8.23 5.86 -10.98 -0.06 8.16 16 12 O -0.52 -10.36 14.34 5.56 0.08 -10.28 16 13 N -0.71 -10.27 5.19 -45.67 -0.24 -10.51 16 14 C 0.16 2.92 0.93 -129.73 -0.12 2.80 16 15 C -0.11 -2.03 5.50 -24.96 -0.14 -2.17 16 16 C -0.12 -1.88 6.92 -24.56 -0.17 -2.05 16 17 C -0.11 -1.83 6.25 -24.95 -0.16 -1.99 16 18 C -0.11 -2.00 3.63 -88.53 -0.32 -2.32 16 19 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 20 C 0.14 3.37 5.62 -3.25 -0.02 3.35 16 21 N -0.59 -15.32 3.42 -169.94 -0.58 -15.91 16 22 C -0.21 -6.02 10.33 -15.06 -0.16 -6.18 16 23 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 24 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 25 N -0.92 -26.39 10.08 55.49 0.56 -25.83 16 26 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 C 0.14 3.14 5.36 -2.44 -0.01 3.13 16 31 H 0.09 1.03 6.90 -51.93 -0.36 0.67 16 32 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 36 H 0.07 0.40 6.80 -51.93 -0.35 0.05 16 37 H 0.12 1.67 7.43 -51.93 -0.39 1.29 16 38 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.39 4.48 8.29 -40.82 -0.34 4.14 16 40 H 0.06 1.25 6.65 -51.93 -0.35 0.91 16 41 H 0.08 1.59 7.57 -51.93 -0.39 1.19 16 42 H 0.05 0.73 7.29 -51.93 -0.38 0.35 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.62 7.62 -51.93 -0.40 1.22 16 46 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 47 H 0.13 3.38 4.93 -51.93 -0.26 3.12 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.05 1.28 7.52 -51.93 -0.39 0.89 16 50 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -35.00 389.45 -9.29 -44.29 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.13 Total: 5.10 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.29 Total: 5.82 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.88 Total: -59.05 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.17 Total: -19.23 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.00 -9.29 -44.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099031509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.089 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds