Wall clock time and date at job start Tue Mar 31 2020 18:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00370 * 2 1 4 4 C 1.34784 * 119.99296 * 179.97438 * 2 1 3 5 5 O 1.21277 * 120.00054 * 0.02562 * 4 2 1 6 6 C 1.50701 * 119.99655 * 179.97438 * 4 2 1 7 7 H 1.09000 * 115.55340 * 308.89280 * 6 4 2 8 8 C 1.53005 * 117.49790 * 163.22124 * 6 4 2 9 9 C 1.53004 * 117.49550 * 94.56469 * 6 4 2 10 10 H 1.09007 * 117.49596 * 215.02425 * 9 6 4 11 11 C 1.50694 * 117.50081 * 0.02562 * 9 6 4 12 12 O 1.21280 * 120.00370 * 87.26783 * 11 9 6 13 13 N 1.34784 * 120.00011 * 267.27156 * 11 9 6 14 14 C 1.46505 * 119.99715 * 179.97438 * 13 11 9 15 15 C 1.54320 * 111.69258 * 298.98169 * 14 13 11 16 16 C 1.55050 * 103.93905 * 262.78944 * 15 14 13 17 17 C 1.55049 * 102.11042 * 319.94742 * 16 15 14 18 18 C 1.54326 * 103.93943 * 40.05768 * 17 16 15 19 19 H 1.08998 * 111.01885 * 96.80845 * 18 17 16 20 20 C 1.53780 * 109.79079 * 221.69513 * 18 17 16 21 21 N 1.47209 * 106.38430 * 95.21212 * 20 18 17 22 22 C 1.36937 * 126.70296 * 211.28734 * 21 20 18 23 23 H 1.08001 * 119.99351 * 179.97438 * 22 21 20 24 24 C 1.38808 * 119.99961 * 359.96891 * 22 21 20 25 25 N 1.31613 * 120.00247 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99725 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47170 * 60.00257 * 26 24 22 28 28 H 1.48500 * 109.47011 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47029 * 300.00185 * 26 24 22 30 30 C 1.48669 * 107.09180 * 30.74097 * 21 20 18 31 31 H 1.08997 * 109.47608 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47073 * 300.00616 * 1 2 3 33 33 H 1.09003 * 109.47072 * 59.99640 * 1 2 3 34 34 H 1.09006 * 109.47128 * 269.99839 * 3 2 1 35 35 H 1.09002 * 109.47424 * 30.00378 * 3 2 1 36 36 H 1.09005 * 109.47048 * 150.00035 * 3 2 1 37 37 H 1.08998 * 117.49400 * 359.97438 * 8 6 4 38 38 H 1.08995 * 117.49480 * 145.00236 * 8 6 4 39 39 H 0.96992 * 119.99984 * 359.97438 * 13 11 9 40 40 H 1.09003 * 110.53163 * 21.40607 * 15 14 13 41 41 H 1.09003 * 110.53045 * 144.17118 * 15 14 13 42 42 H 1.09003 * 110.90042 * 78.15056 * 16 15 14 43 43 H 1.08995 * 110.90209 * 201.74539 * 16 15 14 44 44 H 1.09005 * 110.53651 * 158.67213 * 17 16 15 45 45 H 1.09007 * 110.53658 * 281.30191 * 17 16 15 46 46 H 1.08997 * 110.07156 * 214.44360 * 20 18 17 47 47 H 1.09001 * 110.07231 * 335.97967 * 20 18 17 48 48 H 0.97001 * 120.00145 * 179.97438 * 25 24 22 49 49 H 1.09007 * 110.91470 * 210.52613 * 30 21 20 50 50 H 1.09004 * 109.94868 * 88.51947 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1387 -1.1673 0.0005 5 8 1.5322 -2.2176 0.0005 6 6 3.6458 -1.1674 -0.0001 7 1 4.1157 -0.5505 -0.7660 8 6 4.3523 -2.4666 0.3923 9 6 4.3527 -1.2746 1.3526 10 1 5.2875 -0.7278 1.4767 11 6 3.4887 -1.3725 2.5834 12 8 3.1003 -2.4555 2.9672 13 7 3.1475 -0.2566 3.2579 14 6 2.3071 -0.3518 4.4541 15 6 0.9266 -0.9628 4.1342 16 6 0.0020 0.2705 3.9669 17 6 0.4971 1.2045 5.1011 18 6 2.0313 1.0401 5.0749 19 1 2.5004 1.8391 4.5009 20 6 2.5707 0.9573 6.5127 21 7 2.6854 -0.4754 6.8312 22 6 2.5369 -1.0543 8.0633 23 1 2.6445 -2.1232 8.1741 24 6 2.2482 -0.2672 9.1697 25 7 2.1167 1.0353 9.0345 26 14 2.0463 -1.0570 10.8505 27 1 3.3032 -1.7538 11.2241 28 1 1.7433 -0.0080 11.8570 29 1 0.9313 -2.0368 10.8063 30 6 2.9810 -1.1838 5.5580 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.3792 1.5832 -1.0277 35 1 1.6085 2.0283 0.5139 36 1 3.1500 1.1382 0.5139 37 1 3.7270 -3.3211 0.6513 38 1 5.2869 -2.7043 -0.1155 39 1 3.4583 0.6095 2.9512 40 1 0.9682 -1.5380 3.2092 41 1 0.5848 -1.5880 4.9592 42 1 0.1451 0.7342 2.9908 43 1 -1.0424 -0.0033 4.1166 44 1 0.2197 2.2381 4.8937 45 1 0.0926 0.8867 6.0621 46 1 3.5492 1.4335 6.5731 47 1 1.8764 1.4392 7.2010 48 1 1.9146 1.5852 9.8076 49 1 2.5695 -2.1931 5.5697 50 1 4.0581 -1.2203 5.3941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099031509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:42 Heat of formation + Delta-G solvation = -32.257085 kcal Electronic energy + Delta-G solvation = -31671.758567 eV Core-core repulsion = 27699.739155 eV Total energy + Delta-G solvation = -3972.019412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94035 -40.95305 -39.54907 -36.99102 -36.48929 -36.18688 -34.69527 -33.37757 -31.06371 -29.64430 -29.25876 -27.48576 -26.60959 -26.33654 -25.14758 -23.98963 -22.41104 -22.17002 -20.85871 -20.34274 -19.85837 -19.05332 -18.57011 -17.49150 -17.29907 -16.97754 -16.79341 -16.60797 -16.04661 -15.77243 -15.44910 -15.28364 -15.14751 -14.80736 -14.71488 -14.43809 -14.12545 -13.99762 -13.62166 -13.33191 -13.30130 -13.11207 -12.99445 -12.83600 -12.82098 -12.79209 -12.21425 -12.13872 -12.07197 -11.91585 -11.78326 -11.72438 -11.65828 -11.60578 -11.51673 -11.43089 -10.96523 -10.76772 -10.68553 -10.04669 -9.62830 -8.92296 -7.76826 -5.24060 1.33357 1.44489 1.47130 1.53594 1.65430 1.96766 2.13487 2.47793 2.78662 3.28891 3.40132 3.47981 3.62409 3.69405 3.75626 3.80207 3.86166 3.95127 4.29765 4.33752 4.37754 4.38780 4.43369 4.48810 4.56292 4.58351 4.69382 4.72838 4.75070 4.84401 4.85355 4.89658 4.93879 4.94676 5.00559 5.02576 5.07348 5.14906 5.19760 5.25510 5.40484 5.45240 5.54224 5.59164 5.72169 5.82713 6.35372 6.37786 6.63005 7.10167 7.15924 7.34323 7.72892 8.40193 9.21104 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.003637 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.741046 B = 7697.827120 C = 8328.637733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.069 3.931 4 C 0.523 3.477 5 O -0.586 6.586 6 C -0.149 4.149 7 H 0.184 0.816 8 C -0.127 4.127 9 C -0.160 4.160 10 H 0.181 0.819 11 C 0.526 3.474 12 O -0.573 6.573 13 N -0.691 5.691 14 C 0.177 3.823 15 C -0.105 4.105 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.097 4.097 19 H 0.112 0.888 20 C 0.144 3.856 21 N -0.613 5.613 22 C -0.242 4.242 23 H 0.067 0.933 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.977 3.023 27 H -0.282 1.282 28 H -0.285 1.285 29 H -0.282 1.282 30 C 0.141 3.859 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.151 0.849 39 H 0.415 0.585 40 H 0.049 0.951 41 H 0.035 0.965 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.038 0.962 46 H -0.015 1.015 47 H 0.103 0.897 48 H 0.251 0.749 49 H 0.020 0.980 50 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.515 8.072 -23.672 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.344 5.344 3 C -0.073 4.073 4 C 0.311 3.689 5 O -0.466 6.466 6 C -0.170 4.170 7 H 0.201 0.799 8 C -0.165 4.165 9 C -0.181 4.181 10 H 0.198 0.802 11 C 0.313 3.687 12 O -0.452 6.452 13 N -0.343 5.343 14 C 0.089 3.911 15 C -0.144 4.144 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.117 4.117 19 H 0.130 0.870 20 C 0.019 3.981 21 N -0.339 5.339 22 C -0.371 4.371 23 H 0.085 0.915 24 C -0.248 4.248 25 N -0.589 5.589 26 Si 0.805 3.195 27 H -0.208 1.208 28 H -0.210 1.210 29 H -0.208 1.208 30 C 0.015 3.985 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.169 0.831 39 H 0.252 0.748 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.057 0.943 46 H 0.003 0.997 47 H 0.121 0.879 48 H 0.061 0.939 49 H 0.039 0.961 50 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 1.858 6.851 -23.150 24.214 hybrid contribution -0.013 -0.655 1.366 1.515 sum 1.846 6.196 -21.784 22.723 Atomic orbital electron populations 1.21752 0.79231 1.02690 1.02929 1.47727 1.07346 1.06871 1.72412 1.22136 0.97823 0.83537 1.03794 1.20328 0.89934 0.83323 0.75286 1.90708 1.70965 1.33369 1.51541 1.22437 0.90265 1.05218 0.99075 0.79869 1.23083 1.03088 0.91105 0.99182 1.22461 1.01648 1.07260 0.86737 0.80179 1.20368 0.79914 0.83716 0.84735 1.90737 1.55481 1.29668 1.69296 1.45750 1.51812 1.09683 1.27009 1.21366 0.89811 0.96123 0.83801 1.22464 0.94595 0.97884 0.99445 1.22517 0.98227 0.94431 0.99050 1.22346 0.93481 1.00358 0.97864 1.22907 0.97534 0.94436 0.96791 0.87017 1.21847 0.97852 0.84742 0.93668 1.45003 1.82668 1.03709 1.02475 1.19311 1.40949 0.92028 0.84817 0.91549 1.25466 1.02161 0.96197 1.00967 1.69797 1.56029 1.03924 1.29100 0.85192 0.77900 0.77112 0.79341 1.20836 1.21004 1.20818 1.21815 0.95561 0.94550 0.86621 0.92899 0.91008 0.89772 0.90179 0.89323 0.89612 0.90941 0.83130 0.74769 0.93195 0.94576 0.89324 0.91560 0.89014 0.94327 0.99708 0.87922 0.93946 0.96144 0.97714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.68 127.77 1.37 2.69 16 2 N -0.61 -10.41 3.27 -871.89 -2.85 -13.27 16 3 C 0.07 0.49 10.24 127.77 1.31 1.80 16 4 C 0.52 12.56 6.42 87.66 0.56 13.13 16 5 O -0.59 -20.94 15.72 -3.02 -0.05 -20.99 16 6 C -0.15 -2.33 4.37 -11.54 -0.05 -2.38 16 7 H 0.18 1.03 8.04 -2.39 -0.02 1.01 16 8 C -0.13 -2.48 9.55 30.62 0.29 -2.19 16 9 C -0.16 -2.90 6.10 -11.52 -0.07 -2.97 16 10 H 0.18 1.69 8.14 -2.38 -0.02 1.67 16 11 C 0.53 15.80 5.86 87.65 0.51 16.31 16 12 O -0.57 -24.15 14.34 -3.03 -0.04 -24.19 16 13 N -0.69 -18.77 5.19 -416.80 -2.16 -20.94 16 14 C 0.18 6.41 0.93 4.96 0.00 6.41 16 15 C -0.11 -3.97 5.50 31.74 0.17 -3.79 16 16 C -0.10 -3.03 6.92 32.00 0.22 -2.81 16 17 C -0.10 -3.30 6.25 31.75 0.20 -3.10 16 18 C -0.10 -3.33 3.63 -9.44 -0.03 -3.36 16 19 H 0.11 2.90 7.71 -2.39 -0.02 2.88 16 20 C 0.14 6.89 5.62 86.51 0.49 7.38 16 21 N -0.61 -33.13 3.42 -691.56 -2.37 -35.49 16 22 C -0.24 -14.31 10.33 84.03 0.87 -13.44 16 23 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 24 C -0.05 -3.15 5.49 84.86 0.47 -2.69 16 25 N -0.94 -54.80 10.08 21.65 0.22 -54.58 16 26 Si 0.98 46.68 29.55 68.60 2.03 48.70 16 27 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 28 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 29 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 30 C 0.14 6.76 5.36 86.22 0.46 7.22 16 31 H 0.05 1.28 6.90 -2.39 -0.02 1.27 16 32 H 0.07 1.10 7.29 -2.38 -0.02 1.08 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 35 H 0.09 0.45 8.07 -2.39 -0.02 0.43 16 36 H 0.09 0.41 6.80 -2.38 -0.02 0.39 16 37 H 0.07 2.16 7.43 -2.39 -0.02 2.14 16 38 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.41 7.62 8.29 -92.71 -0.77 6.85 16 40 H 0.05 2.03 6.65 -2.39 -0.02 2.01 16 41 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 42 H 0.09 2.01 7.29 -2.39 -0.02 1.99 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.09 2.32 8.14 -2.38 -0.02 2.31 16 45 H 0.04 1.57 7.62 -2.38 -0.02 1.55 16 46 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 47 H 0.10 5.53 4.93 -2.39 -0.01 5.52 16 48 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 49 H 0.02 1.08 7.52 -2.38 -0.02 1.06 16 50 H 0.01 0.25 8.05 -2.39 -0.02 0.23 16 Total: -1.00 -86.73 389.45 1.72 -85.02 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.18 Total: 17.53 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 6.77 Total: 18.21 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -7.17 Total: -124.28 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.09 Total: -45.18 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -86.73 1.72 -85.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099031509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal (2) G-P(sol) polarization free energy of solvation -86.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds