Wall clock time and date at job start Tue Mar 31 2020 18:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 3 8 8 C 1.53949 * 113.58227 * 252.72455 * 7 6 4 9 9 C 1.52914 * 86.78407 * 220.66840 * 8 7 6 10 10 C 1.52912 * 121.13702 * 150.61538 * 9 8 7 11 11 C 1.53952 * 86.78001 * 100.82103 * 10 9 8 12 12 N 1.46495 * 113.57755 * 139.33761 * 11 10 9 13 13 C 1.36938 * 120.00404 * 107.27693 * 12 11 10 14 14 H 1.07998 * 119.99715 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00171 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00188 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99865 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47053 * 59.99672 * 17 15 13 19 19 H 1.48495 * 109.46879 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46999 * 300.00091 * 17 15 13 21 21 C 1.52903 * 121.13453 * 259.17743 * 9 8 7 22 22 C 1.52912 * 88.04309 * 24.89429 * 9 8 7 23 23 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 24 24 O 1.21285 * 119.99996 * 179.97438 * 23 2 1 25 25 C 1.50698 * 120.00318 * 0.02562 * 23 2 1 26 26 C 1.52996 * 117.49731 * 248.74733 * 25 23 2 27 27 C 1.52995 * 117.50098 * 180.08721 * 25 23 2 28 28 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 30 30 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 32 32 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 33 33 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 34 34 H 1.09002 * 112.82855 * 23.92065 * 7 6 4 35 35 H 1.09002 * 113.65929 * 335.13719 * 8 7 6 36 36 H 1.08991 * 113.66551 * 106.19355 * 8 7 6 37 37 H 1.08999 * 113.65548 * 215.29263 * 10 9 8 38 38 H 1.09001 * 113.66063 * 346.34337 * 10 9 8 39 39 H 1.09004 * 113.57749 * 270.12408 * 11 10 9 40 40 H 0.97005 * 119.99881 * 287.27663 * 12 11 10 41 41 H 0.96999 * 120.00543 * 179.97438 * 16 15 13 42 42 H 1.09001 * 113.66604 * 13.64831 * 21 9 8 43 43 H 1.09000 * 113.66566 * 144.61010 * 21 9 8 44 44 H 1.08995 * 113.66076 * 220.63265 * 22 9 8 45 45 H 1.08998 * 113.74627 * 89.58413 * 22 9 8 46 46 H 1.09003 * 115.54878 * 34.41018 * 25 23 2 47 47 H 1.08999 * 117.49988 * 359.97438 * 26 25 23 48 48 H 1.09007 * 117.50350 * 145.01809 * 26 25 23 49 49 H 1.09006 * 117.49603 * 214.97518 * 27 25 23 50 50 H 1.08998 * 117.50095 * 359.97387 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0550 1.0209 2.3426 6 7 3.1115 2.8511 1.6671 7 6 3.3561 3.2737 3.0483 8 6 2.4900 4.4674 3.4898 9 6 3.7375 5.0012 4.1948 10 6 3.9577 6.5026 4.3832 11 6 3.4726 6.3040 5.8308 12 7 4.2397 7.0699 6.8161 13 6 3.6821 8.1682 7.4146 14 1 2.6766 8.4695 7.1603 15 6 4.4088 8.8936 8.3486 16 7 5.6339 8.5262 8.6588 17 14 3.6478 10.3914 9.1654 18 1 2.4229 9.9857 9.9003 19 1 4.6220 10.9854 10.1158 20 1 3.2938 11.3942 8.1288 21 6 3.9238 4.8376 5.7036 22 6 4.5783 4.1971 3.2025 23 6 2.1389 -1.1672 -0.0005 24 8 3.3517 -1.1672 -0.0010 25 6 1.3855 -2.4723 -0.0017 26 6 1.4579 -3.3309 1.2626 27 6 2.2076 -3.7626 -0.0002 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0284 -0.5138 32 1 3.1498 1.1384 -0.5139 33 1 3.4266 3.3970 0.9299 34 1 3.3464 2.4421 3.7530 35 1 2.1533 5.0929 2.6631 36 1 1.6848 4.1950 4.1720 37 1 5.0026 6.8040 4.3095 38 1 3.2932 7.1213 3.7800 39 1 2.3952 6.4200 5.9493 40 1 5.1426 6.7991 7.0448 41 1 6.1419 9.0333 9.3112 42 1 3.2323 4.1264 6.1553 43 1 4.9589 4.6696 6.0009 44 1 5.4412 3.7088 3.6554 45 1 4.8295 4.7454 2.2947 46 1 0.4480 -2.4734 -0.5578 47 1 2.0508 -2.9520 2.0950 48 1 0.5682 -3.8973 1.5381 49 1 1.8107 -4.6128 -0.5550 50 1 3.2934 -3.6676 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121189019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:40 Heat of formation + Delta-G solvation = 16.658308 kcal Electronic energy + Delta-G solvation = -28320.234988 eV Core-core repulsion = 24350.336707 eV Total energy + Delta-G solvation = -3969.898281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85829 -40.30561 -39.04372 -36.65787 -35.95981 -35.56608 -33.66618 -32.26213 -29.84872 -29.13239 -27.01556 -25.76966 -25.24047 -24.57904 -23.87112 -22.81819 -22.32165 -20.78157 -20.07866 -19.31815 -17.96523 -17.89294 -17.44045 -16.97654 -16.83493 -15.97653 -15.69135 -15.30187 -15.16591 -14.80319 -14.67645 -14.41245 -14.10670 -13.80229 -13.42148 -13.32828 -13.02191 -12.86832 -12.74508 -12.58112 -12.40445 -12.30069 -12.04031 -11.92471 -11.65562 -11.31446 -11.00461 -10.98184 -10.91272 -10.87533 -10.68983 -10.43076 -10.26259 -10.17344 -10.04944 -9.78332 -9.70841 -9.38446 -9.08555 -9.02452 -8.83743 -6.93465 -5.76270 -3.04733 2.08012 2.39646 2.43097 3.13711 3.44317 3.48278 3.48661 3.49795 4.05375 4.37701 4.45772 4.49912 4.57764 4.60283 4.61747 4.67988 4.70210 4.73943 4.80314 4.89404 4.92960 5.07650 5.22843 5.28378 5.33492 5.41343 5.46163 5.56052 5.57685 5.72374 5.74416 5.80974 5.90626 5.93043 5.95986 5.99363 6.11672 6.20725 6.24439 6.38518 6.44447 6.51891 6.65524 6.88837 6.94837 7.15608 7.33554 7.70683 7.78713 8.05195 8.42552 9.53366 10.12422 10.46815 11.46144 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031095 B = 0.001694 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.241691 B =16522.817074 C =16613.495098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.598 5.598 3 C 0.095 3.905 4 C 0.496 3.504 5 O -0.531 6.531 6 N -0.718 5.718 7 C 0.124 3.876 8 C -0.123 4.123 9 C -0.102 4.102 10 C -0.148 4.148 11 C 0.169 3.831 12 N -0.713 5.713 13 C -0.243 4.243 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.129 4.129 22 C -0.130 4.130 23 C 0.551 3.449 24 O -0.537 6.537 25 C -0.194 4.194 26 C -0.149 4.149 27 C -0.149 4.149 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.400 0.600 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.124 0.876 47 H 0.101 0.899 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 -20.759 -23.576 33.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C -0.032 4.032 4 C 0.280 3.720 5 O -0.407 6.407 6 N -0.369 5.369 7 C 0.019 3.981 8 C -0.162 4.162 9 C -0.103 4.103 10 C -0.189 4.189 11 C 0.057 3.943 12 N -0.351 5.351 13 C -0.374 4.374 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.168 4.168 22 C -0.169 4.169 23 C 0.340 3.660 24 O -0.413 6.413 25 C -0.215 4.215 26 C -0.186 4.186 27 C -0.186 4.186 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.234 0.766 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.142 0.858 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.496 -21.105 -22.797 32.791 hybrid contribution -0.048 1.248 0.139 1.257 sum -10.544 -19.857 -22.658 31.919 Atomic orbital electron populations 1.21828 0.78549 1.04088 1.01578 1.47260 1.07261 1.04668 1.73815 1.21330 1.00308 0.86861 0.94699 1.21171 0.77948 0.80903 0.91966 1.90706 1.50420 1.53524 1.46048 1.46047 1.57964 1.23788 1.09109 1.22625 0.96717 0.96058 0.82653 1.23129 0.96835 0.96365 0.99838 1.22071 0.95716 0.97454 0.95032 1.23638 1.01598 0.92335 1.01357 1.21534 0.95508 0.89233 0.88063 1.42411 1.15842 1.30661 1.46211 1.19269 0.98200 1.03000 1.16976 0.91183 1.24758 0.96413 0.99721 1.00059 1.69647 1.10004 1.41641 1.36833 0.86266 0.77994 0.82848 0.79068 1.21265 1.21697 1.21280 1.23213 1.01709 0.99712 0.92167 1.23177 0.96771 0.97056 0.99851 1.19707 0.87241 0.84348 0.74753 1.90698 1.13950 1.87162 1.49508 1.22158 1.02624 0.90518 1.06248 1.22966 1.03247 1.00930 0.91476 1.22983 1.00102 0.95043 1.00479 0.92288 0.90446 0.90817 0.87334 0.86850 0.76622 0.87019 0.89887 0.91056 0.90299 0.92748 0.90833 0.78113 0.93447 0.92129 0.90029 0.90883 0.89843 0.85766 0.88017 0.87654 0.87848 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 10.01 59.85 0.60 1.04 16 2 N -0.60 -5.19 2.36 -182.96 -0.43 -5.62 16 3 C 0.09 0.75 5.89 -5.19 -0.03 0.72 16 4 C 0.50 5.56 7.90 -10.98 -0.09 5.47 16 5 O -0.53 -8.25 16.03 5.56 0.09 -8.16 16 6 N -0.72 -6.91 5.35 -52.85 -0.28 -7.19 16 7 C 0.12 1.47 4.24 -66.95 -0.28 1.18 16 8 C -0.12 -1.51 7.64 -26.28 -0.20 -1.71 16 9 C -0.10 -1.43 1.11 -154.71 -0.17 -1.60 16 10 C -0.15 -2.52 7.64 -26.28 -0.20 -2.72 16 11 C 0.17 3.36 4.48 -66.95 -0.30 3.06 16 12 N -0.71 -18.04 5.40 -52.48 -0.28 -18.33 16 13 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 17 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C -0.13 -2.16 7.59 -26.29 -0.20 -2.36 16 22 C -0.13 -1.54 7.59 -26.28 -0.20 -1.74 16 23 C 0.55 5.93 7.46 -10.99 -0.08 5.85 16 24 O -0.54 -7.77 15.84 5.55 0.09 -7.68 16 25 C -0.19 -1.46 4.79 -91.78 -0.44 -1.90 16 26 C -0.15 -1.07 10.24 -26.70 -0.27 -1.34 16 27 C -0.15 -1.05 10.05 -26.70 -0.27 -1.32 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 0.38 6.65 -51.93 -0.35 0.04 16 30 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.11 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.11 0.90 7.42 -51.93 -0.39 0.51 16 33 H 0.40 2.61 8.72 -40.82 -0.36 2.26 16 34 H 0.11 1.58 7.47 -51.93 -0.39 1.20 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 40 H 0.38 10.32 7.92 -40.82 -0.32 10.00 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.42 8.12 -51.93 -0.42 0.99 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 46 H 0.12 0.60 7.27 -51.93 -0.38 0.22 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 49 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.11 0.95 7.67 -51.93 -0.40 0.55 16 LS Contribution 412.15 15.07 6.21 6.21 Total: -1.00 -36.06 412.15 -9.74 -45.81 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.45 Total: 9.94 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.38 Total: -4.81 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.27 Total: -58.74 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.18 Total: -15.84 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.06 -9.74 -45.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121189019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.464 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds