Wall clock time and date at job start Tue Mar 31 2020 18:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 3 8 8 C 1.53949 * 113.58227 * 252.72455 * 7 6 4 9 9 C 1.52914 * 86.78407 * 220.66840 * 8 7 6 10 10 C 1.52912 * 121.13702 * 150.61538 * 9 8 7 11 11 C 1.53952 * 86.78001 * 100.82103 * 10 9 8 12 12 N 1.46495 * 113.57755 * 139.33761 * 11 10 9 13 13 C 1.36938 * 120.00404 * 107.27693 * 12 11 10 14 14 H 1.07998 * 119.99715 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00171 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00188 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99865 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47053 * 59.99672 * 17 15 13 19 19 H 1.48495 * 109.46879 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46999 * 300.00091 * 17 15 13 21 21 C 1.52903 * 121.13453 * 259.17743 * 9 8 7 22 22 C 1.52912 * 88.04309 * 24.89429 * 9 8 7 23 23 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 24 24 O 1.21285 * 119.99996 * 179.97438 * 23 2 1 25 25 C 1.50698 * 120.00318 * 0.02562 * 23 2 1 26 26 C 1.52996 * 117.49731 * 248.74733 * 25 23 2 27 27 C 1.52995 * 117.50098 * 180.08721 * 25 23 2 28 28 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 30 30 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 32 32 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 33 33 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 34 34 H 1.09002 * 112.82855 * 23.92065 * 7 6 4 35 35 H 1.09002 * 113.65929 * 335.13719 * 8 7 6 36 36 H 1.08991 * 113.66551 * 106.19355 * 8 7 6 37 37 H 1.08999 * 113.65548 * 215.29263 * 10 9 8 38 38 H 1.09001 * 113.66063 * 346.34337 * 10 9 8 39 39 H 1.09004 * 113.57749 * 270.12408 * 11 10 9 40 40 H 0.97005 * 119.99881 * 287.27663 * 12 11 10 41 41 H 0.96999 * 120.00543 * 179.97438 * 16 15 13 42 42 H 1.09001 * 113.66604 * 13.64831 * 21 9 8 43 43 H 1.09000 * 113.66566 * 144.61010 * 21 9 8 44 44 H 1.08995 * 113.66076 * 220.63265 * 22 9 8 45 45 H 1.08998 * 113.74627 * 89.58413 * 22 9 8 46 46 H 1.09003 * 115.54878 * 34.41018 * 25 23 2 47 47 H 1.08999 * 117.49988 * 359.97438 * 26 25 23 48 48 H 1.09007 * 117.50350 * 145.01809 * 26 25 23 49 49 H 1.09006 * 117.49603 * 214.97518 * 27 25 23 50 50 H 1.08998 * 117.50095 * 359.97387 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0550 1.0209 2.3426 6 7 3.1115 2.8511 1.6671 7 6 3.3561 3.2737 3.0483 8 6 2.4900 4.4674 3.4898 9 6 3.7375 5.0012 4.1948 10 6 3.9577 6.5026 4.3832 11 6 3.4726 6.3040 5.8308 12 7 4.2397 7.0699 6.8161 13 6 3.6821 8.1682 7.4146 14 1 2.6766 8.4695 7.1603 15 6 4.4088 8.8936 8.3486 16 7 5.6339 8.5262 8.6588 17 14 3.6478 10.3914 9.1654 18 1 2.4229 9.9857 9.9003 19 1 4.6220 10.9854 10.1158 20 1 3.2938 11.3942 8.1288 21 6 3.9238 4.8376 5.7036 22 6 4.5783 4.1971 3.2025 23 6 2.1389 -1.1672 -0.0005 24 8 3.3517 -1.1672 -0.0010 25 6 1.3855 -2.4723 -0.0017 26 6 1.4579 -3.3309 1.2626 27 6 2.2076 -3.7626 -0.0002 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0284 -0.5138 32 1 3.1498 1.1384 -0.5139 33 1 3.4266 3.3970 0.9299 34 1 3.3464 2.4421 3.7530 35 1 2.1533 5.0929 2.6631 36 1 1.6848 4.1950 4.1720 37 1 5.0026 6.8040 4.3095 38 1 3.2932 7.1213 3.7800 39 1 2.3952 6.4200 5.9493 40 1 5.1426 6.7991 7.0448 41 1 6.1419 9.0333 9.3112 42 1 3.2323 4.1264 6.1553 43 1 4.9589 4.6696 6.0009 44 1 5.4412 3.7088 3.6554 45 1 4.8295 4.7454 2.2947 46 1 0.4480 -2.4734 -0.5578 47 1 2.0508 -2.9520 2.0950 48 1 0.5682 -3.8973 1.5381 49 1 1.8107 -4.6128 -0.5550 50 1 3.2934 -3.6676 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121189019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:39 Heat of formation + Delta-G solvation = -7.712656 kcal Electronic energy + Delta-G solvation = -28321.291793 eV Core-core repulsion = 24350.336707 eV Total energy + Delta-G solvation = -3970.955085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78941 -41.26163 -40.02632 -37.42626 -37.06977 -36.41636 -35.25711 -33.68201 -31.53188 -30.00558 -27.57668 -26.78614 -26.67392 -26.08872 -25.04713 -23.50783 -23.31861 -21.69413 -21.47594 -20.01713 -19.46100 -18.70318 -18.56925 -18.27102 -17.63915 -16.94051 -16.80324 -16.38865 -16.14764 -16.00676 -15.79120 -15.43232 -15.33475 -15.00890 -14.69391 -14.38016 -13.84037 -13.69352 -13.63485 -13.57216 -13.53240 -13.27703 -13.11303 -12.97009 -12.86915 -12.79902 -12.47087 -12.35212 -12.28679 -12.10496 -11.90556 -11.55748 -11.46750 -11.43365 -11.14386 -11.07334 -10.97023 -10.80986 -10.75140 -10.01483 -9.74269 -8.97596 -7.94473 -5.22894 1.33209 1.46755 1.49975 1.56127 1.57886 1.79457 2.36070 2.56567 2.90872 3.36426 3.48242 3.49683 3.52038 3.65450 3.77417 3.83537 3.84977 3.94693 3.99467 4.10652 4.22041 4.26938 4.27698 4.33014 4.36537 4.47693 4.60273 4.70997 4.73095 4.78614 4.80969 4.86051 4.91656 4.94140 4.98888 4.99805 5.03614 5.07085 5.12666 5.18965 5.25901 5.34483 5.43637 5.55072 5.62039 5.70247 6.24334 6.27553 6.55461 7.05828 7.25098 7.33088 8.10974 8.34000 9.28718 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031095 B = 0.001694 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.241691 B =16522.817074 C =16613.495098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.095 3.905 4 C 0.491 3.509 5 O -0.581 6.581 6 N -0.704 5.704 7 C 0.130 3.870 8 C -0.113 4.113 9 C -0.090 4.090 10 C -0.136 4.136 11 C 0.147 3.853 12 N -0.729 5.729 13 C -0.245 4.245 14 H 0.076 0.924 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.974 3.026 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.276 1.276 21 C -0.126 4.126 22 C -0.120 4.120 23 C 0.536 3.464 24 O -0.588 6.588 25 C -0.195 4.195 26 C -0.150 4.150 27 C -0.149 4.149 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.113 0.887 33 H 0.418 0.582 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.372 0.628 41 H 0.251 0.749 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.159 0.841 47 H 0.071 0.929 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 -20.840 -26.338 36.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.329 5.329 3 C -0.031 4.031 4 C 0.278 3.722 5 O -0.460 6.460 6 N -0.356 5.356 7 C 0.024 3.976 8 C -0.152 4.152 9 C -0.091 4.091 10 C -0.177 4.177 11 C 0.038 3.962 12 N -0.367 5.367 13 C -0.377 4.377 14 H 0.094 0.906 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.803 3.197 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.202 1.202 21 C -0.164 4.164 22 C -0.158 4.158 23 C 0.326 3.674 24 O -0.468 6.468 25 C -0.215 4.215 26 C -0.187 4.187 27 C -0.186 4.186 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.171 0.829 32 H 0.131 0.869 33 H 0.256 0.744 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.128 0.872 46 H 0.176 0.824 47 H 0.089 0.911 48 H 0.152 0.848 49 H 0.151 0.849 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.936 -21.172 -25.633 35.675 hybrid contribution 0.654 1.235 0.979 1.706 sum -12.282 -19.937 -24.654 34.003 Atomic orbital electron populations 1.22076 0.76442 1.04400 1.03636 1.47473 1.08686 1.04367 1.72370 1.21510 1.01362 0.87730 0.92500 1.21832 0.77007 0.80477 0.92923 1.90690 1.52556 1.54986 1.47792 1.45881 1.57280 1.23694 1.08754 1.22285 0.96679 0.95097 0.83508 1.23131 0.95668 0.96366 0.99994 1.21896 0.98148 0.95363 0.93710 1.23383 1.00803 0.94672 0.98794 1.21915 0.94976 0.90663 0.88659 1.42604 1.15726 1.30857 1.47498 1.19688 0.98324 1.03349 1.16371 0.90559 1.25590 0.97047 1.02984 1.01369 1.69813 1.11472 1.43059 1.37813 0.85200 0.77058 0.79447 0.77996 1.20465 1.22242 1.20248 1.23091 1.01064 0.97511 0.94776 1.23164 0.96257 0.96391 0.99947 1.20371 0.86987 0.85980 0.74038 1.90663 1.16125 1.88015 1.52021 1.22312 1.03560 0.88997 1.06662 1.22984 1.03963 1.01201 0.90591 1.23028 0.98791 0.96013 1.00745 0.89206 0.90042 0.90746 0.82879 0.86885 0.74400 0.89684 0.87566 0.91912 0.91653 0.91541 0.91119 0.79564 0.94074 0.91849 0.91004 0.91335 0.87210 0.82356 0.91050 0.84821 0.84891 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.01 127.77 1.28 1.88 16 2 N -0.60 -9.36 2.36 -851.14 -2.01 -11.37 16 3 C 0.10 1.29 5.89 85.63 0.50 1.80 16 4 C 0.49 10.38 7.90 87.66 0.69 11.08 16 5 O -0.58 -18.07 16.03 -3.03 -0.05 -18.12 16 6 N -0.70 -12.00 5.35 -439.51 -2.35 -14.35 16 7 C 0.13 2.88 4.24 45.63 0.19 3.08 16 8 C -0.11 -2.53 7.64 30.89 0.24 -2.30 16 9 C -0.09 -2.41 1.11 -52.31 -0.06 -2.47 16 10 C -0.14 -4.47 7.64 30.89 0.24 -4.23 16 11 C 0.15 5.89 4.48 45.63 0.20 6.10 16 12 N -0.73 -37.66 5.40 -319.93 -1.73 -39.39 16 13 C -0.25 -13.86 9.97 84.03 0.84 -13.02 16 14 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 15 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 16 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 17 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C -0.13 -4.24 7.59 30.88 0.23 -4.01 16 22 C -0.12 -2.59 7.59 30.89 0.23 -2.35 16 23 C 0.54 11.31 7.46 87.66 0.65 11.96 16 24 O -0.59 -17.57 15.84 -3.05 -0.05 -17.62 16 25 C -0.19 -2.65 4.79 -11.54 -0.06 -2.70 16 26 C -0.15 -2.06 10.24 30.62 0.31 -1.75 16 27 C -0.15 -1.98 10.05 30.62 0.31 -1.67 16 28 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.08 0.59 6.65 -2.39 -0.02 0.57 16 30 H 0.07 0.61 8.07 -2.39 -0.02 0.59 16 31 H 0.15 0.67 8.07 -2.39 -0.02 0.65 16 32 H 0.11 1.61 7.42 -2.39 -0.02 1.59 16 33 H 0.42 4.05 8.72 -92.71 -0.81 3.24 16 34 H 0.09 2.42 7.47 -2.39 -0.02 2.41 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.84 8.10 -2.38 -0.02 2.82 16 40 H 0.37 20.70 7.92 -92.70 -0.73 19.97 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.11 1.86 8.12 -2.39 -0.02 1.84 16 46 H 0.16 0.99 7.27 -2.39 -0.02 0.97 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.08 1.53 7.67 -2.39 -0.02 1.51 16 Total: -1.00 -82.41 412.15 1.81 -80.60 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.59 Total: 34.41 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.28 Total: -2.68 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -5.81 Total: -125.18 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.10 Total: -35.74 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -82.41 1.81 -80.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121189019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.890 kcal (2) G-P(sol) polarization free energy of solvation -82.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds