Wall clock time and date at job start Tue Mar 31 2020 18:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 110.99914 * 2 1 4 4 C 1.46907 * 110.99551 * 123.94997 * 2 1 3 5 5 C 1.53001 * 109.46650 * 169.99798 * 4 2 1 6 6 C 1.50707 * 109.46742 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00308 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99577 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99869 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47072 * 180.02562 * 9 8 6 11 11 N 1.46896 * 109.47008 * 180.02562 * 10 9 8 12 12 C 1.46896 * 111.00173 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47411 * 179.97438 * 12 11 10 14 14 C 1.38299 * 119.92643 * 269.72526 * 13 12 11 15 15 C 1.38109 * 120.06519 * 179.72276 * 14 13 12 16 16 C 1.38880 * 119.92869 * 0.56641 * 15 14 13 17 17 O 1.35746 * 120.06809 * 179.68071 * 16 15 14 18 18 C 1.34831 * 116.99929 * 174.49287 * 17 16 15 19 19 H 1.07990 * 120.00367 * 5.05416 * 18 17 16 20 20 C 1.38657 * 119.99564 * 185.05913 * 18 17 16 21 21 N 1.31554 * 120.00347 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99778 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47123 * 89.99653 * 22 20 18 24 24 H 1.48495 * 109.47041 * 210.00114 * 22 20 18 25 25 H 1.48504 * 109.46986 * 329.99673 * 22 20 18 26 26 C 1.38880 * 119.86229 * 359.71062 * 16 15 14 27 27 C 1.38094 * 119.93221 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.47371 * 296.05062 * 1 2 3 29 29 H 1.09002 * 109.47186 * 56.04749 * 1 2 3 30 30 H 1.09002 * 109.47468 * 176.05060 * 1 2 3 31 31 H 1.09005 * 109.46874 * 183.95403 * 3 2 1 32 32 H 1.09004 * 109.46961 * 303.94874 * 3 2 1 33 33 H 1.09000 * 109.47644 * 63.94895 * 3 2 1 34 34 H 1.09000 * 109.46967 * 50.00088 * 4 2 1 35 35 H 1.09003 * 109.47175 * 289.99801 * 4 2 1 36 36 H 1.09000 * 109.47199 * 60.00432 * 5 4 2 37 37 H 1.08991 * 109.47442 * 300.00245 * 5 4 2 38 38 H 0.97000 * 120.00513 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.46774 * 60.00187 * 9 8 6 40 40 H 1.09003 * 109.46983 * 300.00136 * 9 8 6 41 41 H 1.08991 * 109.47502 * 60.00002 * 10 9 8 42 42 H 1.09003 * 109.46864 * 299.99641 * 10 9 8 43 43 H 1.00900 * 111.00166 * 56.03938 * 11 10 9 44 44 H 1.08999 * 109.47001 * 299.99726 * 12 11 10 45 45 H 1.08995 * 109.47623 * 59.99616 * 12 11 10 46 46 H 1.07996 * 119.97034 * 359.97438 * 14 13 12 47 47 H 1.08001 * 120.03309 * 180.27484 * 15 14 13 48 48 H 0.97005 * 119.99919 * 179.97438 * 21 20 18 49 49 H 1.08000 * 120.03494 * 179.97438 * 26 16 15 50 50 H 1.08002 * 119.96924 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9554 0.9704 6 6 4.0445 -1.7406 2.1379 7 8 3.2961 -2.1125 3.0168 8 7 5.3590 -2.0304 2.2046 9 6 5.8840 -2.7942 3.3392 10 6 7.3930 -2.9836 3.1721 11 7 7.9193 -3.7499 4.3094 12 6 9.3687 -3.9522 4.1824 13 6 9.8717 -4.7397 5.3647 14 6 10.3020 -4.0792 6.5010 15 6 10.7581 -4.7983 7.5884 16 6 10.7953 -6.1856 7.5354 17 8 11.2491 -6.8949 8.6002 18 6 11.1523 -8.2378 8.5272 19 1 10.8047 -8.7055 7.6180 20 6 11.4989 -9.0181 9.6197 21 7 11.9227 -8.4484 10.7271 22 14 11.3641 -10.8786 9.5189 23 1 12.6460 -11.4417 9.0240 24 1 11.0701 -11.4273 10.8671 25 1 10.2690 -11.2457 8.5855 26 6 10.3678 -6.8456 6.3907 27 6 9.9067 -6.1212 5.3092 28 1 -0.3634 0.4513 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3431 -0.0709 32 1 1.5898 1.9162 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 1.5088 -1.7406 1.1758 35 1 1.7974 -0.2246 2.0629 36 1 3.9909 0.0193 0.9324 37 1 3.7023 -1.4966 0.0453 38 1 5.9575 -1.7333 1.5015 39 1 5.3972 -3.7687 3.3775 40 1 5.6864 -2.2527 4.2644 41 1 7.8795 -2.0090 3.1340 42 1 7.5909 -3.5249 2.2469 43 1 7.4384 -4.6318 4.4047 44 1 9.5800 -4.5000 3.2641 45 1 9.8693 -2.9845 4.1514 46 1 10.2776 -3.0002 6.5397 47 1 11.0899 -4.2821 8.4772 48 1 12.1648 -8.9943 11.4915 49 1 10.3959 -7.9243 6.3464 50 1 9.5738 -6.6339 4.4189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133294486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:43 Heat of formation + Delta-G solvation = -62.833285 kcal Electronic energy + Delta-G solvation = -26694.596921 eV Core-core repulsion = 22721.251626 eV Total energy + Delta-G solvation = -3973.345295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87517 -40.76284 -38.77072 -38.34589 -37.25174 -35.38167 -34.27270 -32.65762 -31.79169 -31.53625 -29.04889 -28.48101 -27.43877 -26.13399 -24.94805 -23.60866 -23.10242 -22.34779 -21.89974 -21.16489 -19.83822 -18.87014 -18.25833 -17.24988 -17.15078 -16.83408 -16.44566 -16.32521 -16.13797 -15.91220 -15.71842 -15.67797 -15.49536 -15.17422 -14.99569 -14.86654 -14.35001 -14.23013 -14.04392 -13.87683 -13.69076 -13.38106 -13.28810 -12.97302 -12.78203 -12.63699 -12.60463 -12.46528 -12.43434 -12.29830 -12.22251 -12.14276 -11.98602 -11.90960 -11.16272 -10.97997 -10.79231 -10.12245 -9.75926 -9.39219 -9.36583 -8.89618 -8.47040 -6.15369 0.62482 0.68572 1.34674 1.43959 1.52291 1.62732 2.06363 2.17724 2.80516 3.02465 3.15498 3.54173 3.59171 3.80395 3.89141 3.99597 4.05204 4.08993 4.15387 4.20336 4.25304 4.29193 4.48397 4.50242 4.54608 4.59936 4.63433 4.65611 4.70585 4.77127 4.83240 4.90358 4.95120 4.97826 4.99511 5.00481 5.07991 5.11289 5.16111 5.33074 5.41136 5.59119 5.72985 5.82254 5.97322 6.03431 6.04111 6.06744 6.26733 6.41726 6.55019 6.97754 7.26045 7.79281 8.76334 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.001349 C = 0.001314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.222004 B =20750.134432 C =21300.687464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.555 5.555 3 C 0.015 3.985 4 C 0.070 3.930 5 C -0.125 4.125 6 C 0.510 3.490 7 O -0.592 6.592 8 N -0.714 5.714 9 C 0.124 3.876 10 C 0.059 3.941 11 N -0.697 5.697 12 C 0.126 3.874 13 C -0.160 4.160 14 C -0.047 4.047 15 C -0.208 4.208 16 C 0.113 3.887 17 O -0.235 6.235 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.253 1.253 26 C -0.244 4.244 27 C -0.061 4.061 28 H 0.022 0.978 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.419 0.581 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.343 0.657 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.145 0.855 47 H 0.110 0.890 48 H 0.272 0.728 49 H 0.117 0.883 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.821 17.468 -27.376 36.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.279 5.279 3 C -0.133 4.133 4 C -0.058 4.058 5 C -0.164 4.164 6 C 0.297 3.703 7 O -0.472 6.472 8 N -0.368 5.368 9 C -0.001 4.001 10 C -0.070 4.070 11 N -0.330 5.330 12 C -0.002 4.002 13 C -0.161 4.161 14 C -0.066 4.066 15 C -0.228 4.228 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.264 4.264 27 C -0.080 4.080 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.257 0.743 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.161 0.839 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.163 0.837 47 H 0.128 0.872 48 H 0.081 0.919 49 H 0.135 0.865 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.951 17.563 -26.387 35.485 hybrid contribution 0.099 -1.186 0.706 1.384 sum -15.852 16.377 -25.681 34.337 Atomic orbital electron populations 1.22433 0.86548 1.02711 1.00960 1.62033 1.08749 1.14824 1.42295 1.22567 1.01877 0.87961 1.00882 1.21755 0.94590 0.98380 0.91094 1.21585 0.95842 1.02198 0.96818 1.21201 0.82010 0.79405 0.87678 1.90724 1.58671 1.55303 1.42531 1.45772 1.08649 1.56406 1.25937 1.21108 0.93991 0.95781 0.89178 1.22022 0.92584 0.99990 0.92413 1.60362 1.04149 1.25142 1.43307 1.20606 0.87255 0.99179 0.93167 1.19662 1.06095 0.93055 0.97328 1.20874 0.94811 0.99885 0.91014 1.20485 1.10201 0.90659 1.01409 1.19974 0.92969 0.92733 0.88100 1.83940 1.72368 1.20487 1.37360 1.21826 1.46857 0.78685 1.01677 0.88101 1.26587 0.95768 1.06069 0.93579 1.70188 1.43324 1.38406 1.04041 0.84594 0.79632 0.73474 0.78554 1.18683 1.19635 1.17693 1.21237 1.09605 1.00483 0.95046 1.20970 0.96231 0.93822 0.96936 0.95937 0.89886 0.91297 0.89781 0.90241 0.96013 0.91482 0.95709 0.86438 0.85938 0.74347 0.92892 0.92655 0.89064 0.92831 0.83874 0.93085 0.89240 0.83734 0.87216 0.91865 0.86522 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 127.69 1.22 1.44 16 2 N -0.56 -6.43 5.02 -948.82 -4.76 -11.19 16 3 C 0.01 0.12 9.32 127.69 1.19 1.31 16 4 C 0.07 1.00 4.25 86.30 0.37 1.36 16 5 C -0.12 -1.18 5.62 29.85 0.17 -1.01 16 6 C 0.51 8.45 7.83 87.66 0.69 9.14 16 7 O -0.59 -16.17 15.98 -3.02 -0.05 -16.21 16 8 N -0.71 -8.29 5.56 -463.04 -2.57 -10.86 16 9 C 0.12 1.98 5.93 86.38 0.51 2.49 16 10 C 0.06 0.73 5.80 86.30 0.50 1.23 16 11 N -0.70 -13.15 6.49 -517.96 -3.36 -16.51 16 12 C 0.13 2.47 5.81 85.56 0.50 2.97 16 13 C -0.16 -4.69 5.40 -19.83 -0.11 -4.80 16 14 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 15 C -0.21 -8.98 9.99 22.39 0.22 -8.75 16 16 C 0.11 5.67 6.65 22.58 0.15 5.82 16 17 O -0.23 -14.38 9.76 -22.71 -0.22 -14.60 16 18 C -0.41 -24.43 9.49 67.92 0.64 -23.78 16 19 H 0.10 5.44 5.20 -2.92 -0.02 5.43 16 20 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 21 N -0.92 -57.22 13.67 21.61 0.30 -56.92 16 22 Si 1.02 43.21 29.55 68.60 2.03 45.23 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 26 C -0.24 -10.57 9.17 22.39 0.21 -10.36 16 27 C -0.06 -2.00 9.69 22.25 0.22 -1.79 16 28 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 31 H 0.08 0.42 6.47 -2.38 -0.02 0.41 16 32 H 0.08 0.47 8.12 -2.38 -0.02 0.45 16 33 H 0.02 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.07 1.15 8.02 -2.39 -0.02 1.13 16 35 H 0.02 0.44 8.08 -2.39 -0.02 0.42 16 36 H 0.12 0.58 6.55 -2.39 -0.02 0.56 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.42 1.72 8.47 -92.71 -0.79 0.93 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.34 6.84 8.72 -89.69 -0.78 6.06 16 44 H 0.05 0.84 8.08 -2.39 -0.02 0.82 16 45 H 0.09 1.53 8.08 -2.39 -0.02 1.52 16 46 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 47 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 48 H 0.27 15.48 8.31 -92.70 -0.77 14.70 16 49 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 50 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -79.77 414.22 -2.11 -81.88 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.62 Total: 26.11 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 7.16 Total: -26.93 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -10.40 Total: -95.49 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.27 Total: -30.81 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -79.77 -2.11 -81.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133294486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.049 kcal (2) G-P(sol) polarization free energy of solvation -79.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds