Wall clock time and date at job start Tue Mar 31 2020 18:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36093 * 117.00110 * 2 1 4 4 C 1.38467 * 120.02403 * 359.96961 * 3 2 1 5 5 C 1.38271 * 120.07158 * 180.02562 * 4 3 2 6 6 C 1.38700 * 120.12374 * 0.04734 * 5 4 3 7 7 O 1.35974 * 119.97789 * 179.97438 * 6 5 4 8 8 C 1.42898 * 117.00125 * 359.97438 * 7 6 5 9 9 C 1.38645 * 120.04904 * 359.70394 * 6 5 4 10 10 C 1.50702 * 120.03695 * 180.29613 * 9 6 5 11 11 N 1.46895 * 109.47281 * 270.22588 * 10 9 6 12 12 C 1.46953 * 111.00447 * 293.80307 * 11 10 9 13 13 C 1.53049 * 109.36879 * 176.80858 * 12 11 10 14 14 N 1.46957 * 109.36264 * 58.39986 * 13 12 11 15 15 C 1.46903 * 110.99969 * 176.81613 * 14 13 12 16 16 C 1.50691 * 109.47378 * 58.99019 * 15 14 13 17 17 H 1.08001 * 119.99915 * 4.99251 * 16 15 14 18 18 C 1.37879 * 120.00316 * 184.98775 * 16 15 14 19 19 N 1.31507 * 120.00431 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99639 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47282 * 89.99905 * 20 18 16 22 22 H 1.48497 * 109.47027 * 209.99815 * 20 18 16 23 23 H 1.48501 * 109.47366 * 329.99613 * 20 18 16 24 24 C 1.46962 * 110.88220 * 300.68236 * 14 13 12 25 25 C 1.46957 * 111.00029 * 170.00032 * 11 10 9 26 26 C 1.38702 * 119.92559 * 0.52751 * 9 6 5 27 27 N 1.39954 * 120.05875 * 179.77329 * 26 9 6 28 28 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46844 * 300.00403 * 1 2 3 30 30 H 1.09001 * 109.47016 * 60.00341 * 1 2 3 31 31 H 1.08003 * 119.96970 * 0.03317 * 4 3 2 32 32 H 1.08003 * 119.94155 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.46706 * 60.00301 * 8 7 6 34 34 H 1.08997 * 109.47538 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47343 * 300.00430 * 8 7 6 36 36 H 1.08997 * 109.47387 * 30.23318 * 10 9 6 37 37 H 1.09007 * 109.46922 * 150.22724 * 10 9 6 38 38 H 1.09002 * 109.48729 * 296.77843 * 12 11 10 39 39 H 1.09003 * 109.48707 * 56.84408 * 12 11 10 40 40 H 1.09001 * 109.48787 * 298.43605 * 13 12 11 41 41 H 1.09000 * 109.51120 * 178.37824 * 13 12 11 42 42 H 1.09002 * 109.46852 * 178.99121 * 15 14 13 43 43 H 1.08996 * 109.46770 * 298.98922 * 15 14 13 44 44 H 0.96997 * 120.00460 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.48726 * 299.35148 * 24 14 13 46 46 H 1.08997 * 109.49001 * 179.29166 * 24 14 13 47 47 H 1.09000 * 109.48586 * 303.15739 * 25 11 10 48 48 H 1.09001 * 109.48760 * 63.22619 * 25 11 10 49 49 H 0.97005 * 119.99713 * 179.72181 * 27 26 9 50 50 H 0.96999 * 120.00261 * 359.44616 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2932 2.3742 -0.0006 5 6 1.9200 3.6067 -0.0012 6 6 3.3049 3.6834 -0.0021 7 8 3.9181 4.8970 -0.0031 8 6 3.0743 6.0503 -0.0038 9 6 4.0644 2.5235 0.0038 10 6 5.5691 2.6072 0.0095 11 7 6.0632 2.6365 -1.3735 12 6 5.7896 1.3650 -2.0576 13 6 6.2467 1.4641 -3.5149 14 7 7.6808 1.7825 -3.5552 15 6 8.1749 1.8120 -4.9383 16 6 7.4079 2.8441 -5.7239 17 1 6.6877 3.4764 -5.2259 18 6 7.6256 2.9815 -7.0785 19 7 6.9566 3.8826 -7.7640 20 14 8.8708 1.8875 -7.9399 21 1 8.1964 0.6565 -8.4250 22 1 9.4573 2.6174 -9.0924 23 1 9.9486 1.5187 -6.9872 24 6 7.9544 3.0541 -2.8710 25 6 7.4973 2.9549 -1.4138 26 6 3.4379 1.2861 -0.0005 27 7 4.2019 0.1135 0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2147 2.3176 -0.0006 32 1 1.3301 4.5114 -0.0012 33 1 2.4453 6.0407 0.8864 34 1 3.6891 6.9503 -0.0051 35 1 2.4448 6.0394 -0.8936 36 1 5.8806 3.5151 0.5260 37 1 5.9794 1.7380 0.5236 38 1 6.3316 0.5606 -1.5604 39 1 4.7200 1.1576 -2.0253 40 1 5.6853 2.2505 -4.0194 41 1 6.0712 0.5127 -4.0170 42 1 9.2345 2.0674 -4.9402 43 1 8.0366 0.8317 -5.3943 44 1 7.1095 3.9789 -8.7170 45 1 7.4124 3.8585 -3.3683 46 1 9.0240 3.2616 -2.9034 47 1 7.6727 3.9066 -0.9121 48 1 8.0587 2.1685 -0.9092 49 1 3.7628 -0.7515 0.0016 50 1 5.1705 0.1657 -0.0038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139273092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:00 Heat of formation + Delta-G solvation = -18.627532 kcal Electronic energy + Delta-G solvation = -30413.009128 eV Core-core repulsion = 26441.580738 eV Total energy + Delta-G solvation = -3971.428390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70048 -38.95338 -38.64906 -36.91943 -35.04757 -34.00397 -32.34817 -30.95480 -30.21541 -28.71048 -28.40454 -27.26276 -26.84967 -25.77779 -23.70863 -22.93140 -21.73935 -21.38789 -20.68734 -19.03113 -18.16279 -17.58499 -17.48003 -16.71208 -16.06158 -15.73271 -15.59571 -15.46934 -15.31312 -14.75078 -14.53754 -14.28529 -14.25458 -14.14198 -13.81018 -13.18040 -13.15493 -12.88860 -12.74744 -12.45781 -12.26322 -12.09001 -11.88816 -11.75421 -11.62560 -11.54504 -11.15745 -10.97962 -10.82889 -10.73425 -10.54683 -10.40640 -10.19087 -10.10087 -9.99145 -9.80358 -9.41358 -8.54068 -8.10983 -7.83935 -7.21388 -7.11808 -6.04570 -4.03803 1.36095 1.63968 3.21732 3.30091 3.30799 3.38278 3.42485 3.73341 3.99084 4.44169 4.45369 4.70078 4.87465 4.97704 5.02337 5.04845 5.07523 5.17806 5.20556 5.28633 5.32243 5.32895 5.39600 5.48139 5.52171 5.60531 5.69613 5.77605 5.91856 5.97391 6.03446 6.10477 6.22327 6.29985 6.30744 6.38752 6.58590 6.65303 6.87818 6.96071 6.99901 7.09844 7.11631 7.43849 7.45803 7.51270 7.62430 7.64182 7.78106 8.13183 8.17641 8.51624 9.00548 9.58334 11.08466 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.003192 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.083529 B = 8769.049204 C = 9235.511595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.323 6.323 3 C 0.011 3.989 4 C -0.122 4.122 5 C -0.234 4.234 6 C 0.166 3.834 7 O -0.304 6.304 8 C 0.030 3.970 9 C -0.157 4.157 10 C 0.115 3.885 11 N -0.526 5.526 12 C 0.058 3.942 13 C 0.064 3.936 14 N -0.537 5.537 15 C 0.155 3.845 16 C -0.548 4.548 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.063 3.937 25 C 0.061 3.939 26 C 0.243 3.757 27 N -0.868 5.868 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.030 0.970 38 H 0.027 0.973 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.031 0.969 49 H 0.403 0.597 50 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.375 -3.508 20.540 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C -0.036 4.036 4 C -0.142 4.142 5 C -0.255 4.255 6 C 0.119 3.881 7 O -0.217 6.217 8 C -0.066 4.066 9 C -0.164 4.164 10 C -0.012 4.012 11 N -0.251 5.251 12 C -0.070 4.070 13 C -0.065 4.065 14 N -0.261 5.261 15 C 0.028 3.972 16 C -0.587 4.587 17 H 0.095 0.905 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.066 4.066 25 C -0.067 4.067 26 C 0.136 3.864 27 N -0.410 5.410 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.049 0.951 49 H 0.232 0.768 50 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.094 -3.548 20.363 23.458 hybrid contribution 0.101 -0.469 -0.811 0.942 sum -10.992 -4.017 19.552 22.787 Atomic orbital electron populations 1.22917 0.78968 1.03333 1.00928 1.85942 1.20727 1.26494 1.90644 1.18174 0.90118 0.84814 1.10538 1.20686 0.99265 0.91287 1.02949 1.20715 0.93038 0.98072 1.13695 1.18303 0.90118 0.84847 0.94815 1.86126 1.35198 1.12038 1.88292 1.23010 0.95769 0.86817 1.00966 1.18193 0.95313 0.88577 1.14289 1.20574 0.89713 1.00817 0.90122 1.62133 1.16133 1.32930 1.13855 1.22383 1.00218 0.88959 0.95415 1.21936 0.89873 1.01018 0.93660 1.62629 1.14887 1.30619 1.17942 1.20137 0.95769 0.96449 0.84851 1.21723 1.23881 1.19354 0.93712 0.90479 1.24973 0.95582 0.95053 0.97479 1.69932 1.41577 1.34283 1.07983 0.86809 0.82356 0.80845 0.79432 1.20284 1.21389 1.18936 1.21948 0.99835 0.92894 0.91939 1.22200 0.86901 0.99632 0.97945 1.16539 0.87062 0.86954 0.95795 1.42647 1.08594 1.05333 1.84425 0.88743 0.93215 0.92987 0.85594 0.85670 0.93148 0.88467 0.92679 0.89609 0.95242 0.95520 0.90503 0.92672 0.91712 0.95591 0.95835 0.92784 0.92859 0.91525 0.91101 0.95072 0.76840 0.76937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -3.68 9.74 -20.04 -0.20 -3.87 16 3 C 0.01 0.14 6.70 -39.10 -0.26 -0.12 16 4 C -0.12 -1.42 9.03 -39.48 -0.36 -1.78 16 5 C -0.23 -2.86 9.03 -39.40 -0.36 -3.22 16 6 C 0.17 2.33 6.66 -39.26 -0.26 2.06 16 7 O -0.30 -4.19 9.54 -19.66 -0.19 -4.37 16 8 C 0.03 0.29 9.81 101.05 0.99 1.28 16 9 C -0.16 -2.23 4.92 -104.30 -0.51 -2.74 16 10 C 0.12 1.62 4.67 -4.98 -0.02 1.59 16 11 N -0.53 -8.70 4.70 -235.91 -1.11 -9.81 16 12 C 0.06 0.98 4.22 -3.77 -0.02 0.97 16 13 C 0.06 1.32 5.24 -3.77 -0.02 1.30 16 14 N -0.54 -11.59 4.92 -235.91 -1.16 -12.75 16 15 C 0.15 3.82 4.21 -4.98 -0.02 3.80 16 16 C -0.55 -15.62 8.21 -34.44 -0.28 -15.90 16 17 H 0.08 2.42 6.07 -52.49 -0.32 2.10 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 20 Si 0.88 21.80 27.37 -169.99 -4.65 17.14 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.26 -6.33 6.69 56.52 0.38 -5.95 16 24 C 0.06 1.26 5.32 -3.76 -0.02 1.24 16 25 C 0.06 1.01 5.61 -3.77 -0.02 0.98 16 26 C 0.24 3.22 5.55 -83.58 -0.46 2.75 16 27 N -0.87 -9.75 7.81 32.50 0.25 -9.49 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.13 1.14 6.29 -52.48 -0.33 0.81 16 32 H 0.13 1.25 6.28 -52.48 -0.33 0.92 16 33 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 36 H 0.09 1.19 7.42 -51.93 -0.39 0.81 16 37 H 0.03 0.37 6.53 -51.93 -0.34 0.04 16 38 H 0.03 0.42 7.18 -51.93 -0.37 0.05 16 39 H 0.08 1.29 5.54 -51.93 -0.29 1.00 16 40 H 0.06 1.34 6.62 -51.93 -0.34 0.99 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.03 0.65 7.52 -51.93 -0.39 0.26 16 43 H 0.02 0.58 7.29 -51.93 -0.38 0.21 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.05 1.24 6.78 -51.93 -0.35 0.89 16 46 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 47 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.40 4.03 8.19 -40.82 -0.33 3.70 16 50 H 0.40 4.37 5.04 -40.82 -0.21 4.17 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -32.99 377.83 -8.96 -41.95 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.65 Total: 7.15 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.73 Total: -4.54 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -1.24 Total: -59.16 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.38 Total: -8.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.65 Total: 17.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.99 -8.96 -41.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139273092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.325 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds