Wall clock time and date at job start Tue Mar 31 2020 18:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36093 * 117.00110 * 2 1 4 4 C 1.38467 * 120.02403 * 359.96961 * 3 2 1 5 5 C 1.38271 * 120.07158 * 180.02562 * 4 3 2 6 6 C 1.38700 * 120.12374 * 0.04734 * 5 4 3 7 7 O 1.35974 * 119.97789 * 179.97438 * 6 5 4 8 8 C 1.42898 * 117.00125 * 359.97438 * 7 6 5 9 9 C 1.38645 * 120.04904 * 359.70394 * 6 5 4 10 10 C 1.50702 * 120.03695 * 180.29613 * 9 6 5 11 11 N 1.46895 * 109.47281 * 270.22588 * 10 9 6 12 12 C 1.46953 * 111.00447 * 293.80307 * 11 10 9 13 13 C 1.53049 * 109.36879 * 176.80858 * 12 11 10 14 14 N 1.46957 * 109.36264 * 58.39986 * 13 12 11 15 15 C 1.46903 * 110.99969 * 176.81613 * 14 13 12 16 16 C 1.50691 * 109.47378 * 58.99019 * 15 14 13 17 17 H 1.08001 * 119.99915 * 4.99251 * 16 15 14 18 18 C 1.37879 * 120.00316 * 184.98775 * 16 15 14 19 19 N 1.31507 * 120.00431 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99639 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47282 * 89.99905 * 20 18 16 22 22 H 1.48497 * 109.47027 * 209.99815 * 20 18 16 23 23 H 1.48501 * 109.47366 * 329.99613 * 20 18 16 24 24 C 1.46962 * 110.88220 * 300.68236 * 14 13 12 25 25 C 1.46957 * 111.00029 * 170.00032 * 11 10 9 26 26 C 1.38702 * 119.92559 * 0.52751 * 9 6 5 27 27 N 1.39954 * 120.05875 * 179.77329 * 26 9 6 28 28 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46844 * 300.00403 * 1 2 3 30 30 H 1.09001 * 109.47016 * 60.00341 * 1 2 3 31 31 H 1.08003 * 119.96970 * 0.03317 * 4 3 2 32 32 H 1.08003 * 119.94155 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.46706 * 60.00301 * 8 7 6 34 34 H 1.08997 * 109.47538 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47343 * 300.00430 * 8 7 6 36 36 H 1.08997 * 109.47387 * 30.23318 * 10 9 6 37 37 H 1.09007 * 109.46922 * 150.22724 * 10 9 6 38 38 H 1.09002 * 109.48729 * 296.77843 * 12 11 10 39 39 H 1.09003 * 109.48707 * 56.84408 * 12 11 10 40 40 H 1.09001 * 109.48787 * 298.43605 * 13 12 11 41 41 H 1.09000 * 109.51120 * 178.37824 * 13 12 11 42 42 H 1.09002 * 109.46852 * 178.99121 * 15 14 13 43 43 H 1.08996 * 109.46770 * 298.98922 * 15 14 13 44 44 H 0.96997 * 120.00460 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.48726 * 299.35148 * 24 14 13 46 46 H 1.08997 * 109.49001 * 179.29166 * 24 14 13 47 47 H 1.09000 * 109.48586 * 303.15739 * 25 11 10 48 48 H 1.09001 * 109.48760 * 63.22619 * 25 11 10 49 49 H 0.97005 * 119.99713 * 179.72181 * 27 26 9 50 50 H 0.96999 * 120.00261 * 359.44616 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2932 2.3742 -0.0006 5 6 1.9200 3.6067 -0.0012 6 6 3.3049 3.6834 -0.0021 7 8 3.9181 4.8970 -0.0031 8 6 3.0743 6.0503 -0.0038 9 6 4.0644 2.5235 0.0038 10 6 5.5691 2.6072 0.0095 11 7 6.0632 2.6365 -1.3735 12 6 5.7896 1.3650 -2.0576 13 6 6.2467 1.4641 -3.5149 14 7 7.6808 1.7825 -3.5552 15 6 8.1749 1.8120 -4.9383 16 6 7.4079 2.8441 -5.7239 17 1 6.6877 3.4764 -5.2259 18 6 7.6256 2.9815 -7.0785 19 7 6.9566 3.8826 -7.7640 20 14 8.8708 1.8875 -7.9399 21 1 8.1964 0.6565 -8.4250 22 1 9.4573 2.6174 -9.0924 23 1 9.9486 1.5187 -6.9872 24 6 7.9544 3.0541 -2.8710 25 6 7.4973 2.9549 -1.4138 26 6 3.4379 1.2861 -0.0005 27 7 4.2019 0.1135 0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2147 2.3176 -0.0006 32 1 1.3301 4.5114 -0.0012 33 1 2.4453 6.0407 0.8864 34 1 3.6891 6.9503 -0.0051 35 1 2.4448 6.0394 -0.8936 36 1 5.8806 3.5151 0.5260 37 1 5.9794 1.7380 0.5236 38 1 6.3316 0.5606 -1.5604 39 1 4.7200 1.1576 -2.0253 40 1 5.6853 2.2505 -4.0194 41 1 6.0712 0.5127 -4.0170 42 1 9.2345 2.0674 -4.9402 43 1 8.0366 0.8317 -5.3943 44 1 7.1095 3.9789 -8.7170 45 1 7.4124 3.8585 -3.3683 46 1 9.0240 3.2616 -2.9034 47 1 7.6727 3.9066 -0.9121 48 1 8.0587 2.1685 -0.9092 49 1 3.7628 -0.7515 0.0016 50 1 5.1705 0.1657 -0.0038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139273092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:59 Heat of formation + Delta-G solvation = -44.988874 kcal Electronic energy + Delta-G solvation = -30414.152241 eV Core-core repulsion = 26441.580738 eV Total energy + Delta-G solvation = -3972.571503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64788 -40.12653 -39.76615 -38.01279 -36.46331 -35.00451 -34.41771 -32.15837 -31.73551 -30.01713 -29.52049 -28.24506 -27.62592 -27.23219 -25.17958 -24.44743 -23.11573 -22.64928 -21.80944 -20.68171 -19.07557 -18.93341 -18.43535 -18.33650 -17.31901 -16.67999 -16.62887 -16.38683 -16.29953 -16.14696 -15.90200 -15.75580 -15.62254 -15.56163 -15.30165 -14.56398 -14.29728 -14.11152 -14.02439 -13.74649 -13.53747 -13.49097 -13.11451 -13.04214 -12.83172 -12.56220 -12.42006 -12.41614 -12.17544 -12.11022 -12.03732 -11.85085 -11.74332 -11.63992 -11.51530 -11.35918 -10.98801 -10.78734 -9.23280 -9.04805 -8.91349 -8.30777 -8.11540 -6.36247 0.40832 0.68744 1.35260 1.36641 1.49258 2.34021 2.42370 2.45843 2.73211 3.03836 3.10433 3.23609 3.32275 3.79556 3.97193 4.06964 4.23947 4.24775 4.25285 4.35745 4.36376 4.46397 4.47185 4.47698 4.48320 4.56301 4.59376 4.63740 4.70472 4.78602 4.80280 4.87914 4.90369 4.96798 5.03258 5.10306 5.14188 5.16360 5.23493 5.38283 5.39368 5.51253 5.65501 6.04372 6.15201 6.22818 6.28494 6.37149 6.40858 6.55072 6.71009 6.75213 6.95069 7.30160 8.85984 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.003192 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.083529 B = 8769.049204 C = 9235.511595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C 0.001 3.999 4 C -0.123 4.123 5 C -0.240 4.240 6 C 0.147 3.853 7 O -0.327 6.327 8 C 0.023 3.977 9 C -0.180 4.180 10 C 0.124 3.876 11 N -0.546 5.546 12 C 0.076 3.924 13 C 0.067 3.933 14 N -0.526 5.526 15 C 0.161 3.839 16 C -0.548 4.548 17 H 0.029 0.971 18 C 0.009 3.991 19 N -0.949 5.949 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.245 1.245 24 C 0.064 3.936 25 C 0.071 3.929 26 C 0.233 3.767 27 N -0.860 5.860 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.007 0.993 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.266 0.734 45 H 0.009 0.991 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.051 0.949 49 H 0.408 0.592 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 -5.307 22.039 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.250 6.250 3 C -0.047 4.047 4 C -0.142 4.142 5 C -0.261 4.261 6 C 0.100 3.900 7 O -0.241 6.241 8 C -0.072 4.072 9 C -0.186 4.186 10 C -0.003 4.003 11 N -0.272 5.272 12 C -0.052 4.052 13 C -0.062 4.062 14 N -0.250 5.250 15 C 0.033 3.967 16 C -0.587 4.587 17 H 0.047 0.953 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.776 3.224 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.168 1.168 24 C -0.065 4.065 25 C -0.057 4.057 26 C 0.126 3.874 27 N -0.403 5.403 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.025 0.975 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.069 0.931 49 H 0.239 0.761 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.813 -5.361 21.899 25.005 hybrid contribution -0.147 0.172 -1.235 1.256 sum -10.959 -5.189 20.664 23.959 Atomic orbital electron populations 1.23197 0.77119 1.05024 1.01658 1.85926 1.22666 1.25898 1.90542 1.18361 0.90257 0.85664 1.10440 1.21014 1.00600 0.90770 1.01851 1.20983 0.92666 0.99190 1.13245 1.18584 0.90991 0.85007 0.95427 1.86078 1.36744 1.12812 1.88439 1.23234 0.96078 0.86021 1.01846 1.18324 0.95389 0.89215 1.15700 1.20510 0.89908 1.01543 0.88348 1.62064 1.16278 1.32914 1.15915 1.22147 1.00311 0.89942 0.92770 1.21922 0.88782 0.99218 0.96273 1.62679 1.15177 1.31137 1.15977 1.20025 0.95390 0.95168 0.86094 1.21883 1.23147 1.19488 0.94205 0.95288 1.25970 0.97937 0.96679 0.98299 1.70094 1.43798 1.36533 1.08515 0.85625 0.79782 0.78677 0.78305 1.19185 1.20957 1.16792 1.21985 0.99882 0.90687 0.93929 1.22094 0.87138 1.01275 0.95155 1.16684 0.87731 0.87165 0.95831 1.42572 1.08549 1.05137 1.84040 0.86715 0.91922 0.92725 0.83107 0.83817 0.91092 0.87196 0.92871 0.89634 0.93457 0.93353 0.90451 0.97474 0.91527 0.95042 0.95213 0.92549 0.97271 0.90620 0.89491 0.93077 0.76147 0.76777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -7.09 9.74 -94.61 -0.92 -8.01 16 3 C 0.00 0.01 6.70 22.58 0.15 0.17 16 4 C -0.12 -2.69 9.03 22.33 0.20 -2.48 16 5 C -0.24 -5.64 9.03 22.39 0.20 -5.44 16 6 C 0.15 4.07 6.66 22.48 0.15 4.22 16 7 O -0.33 -9.02 9.54 -93.26 -0.89 -9.91 16 8 C 0.02 0.43 9.81 113.37 1.11 1.54 16 9 C -0.18 -5.00 4.92 -19.66 -0.10 -5.09 16 10 C 0.12 3.33 4.67 85.56 0.40 3.73 16 11 N -0.55 -17.86 4.70 -900.29 -4.23 -22.09 16 12 C 0.08 2.53 4.22 86.31 0.36 2.89 16 13 C 0.07 2.83 5.24 86.31 0.45 3.28 16 14 N -0.53 -22.73 4.92 -900.28 -4.43 -27.16 16 15 C 0.16 7.93 4.21 85.55 0.36 8.29 16 16 C -0.55 -32.44 8.21 25.60 0.21 -32.23 16 17 H 0.03 1.96 6.07 -2.91 -0.02 1.94 16 18 C 0.01 0.52 5.47 84.66 0.46 0.99 16 19 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 20 Si 0.95 44.89 27.37 68.60 1.88 46.76 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.24 -10.65 6.69 99.48 0.67 -9.99 16 24 C 0.06 2.59 5.32 86.31 0.46 3.05 16 25 C 0.07 2.26 5.61 86.31 0.48 2.75 16 26 C 0.23 5.95 5.55 38.21 0.21 6.16 16 27 N -0.86 -18.08 7.81 -51.09 -0.40 -18.48 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 30 H 0.05 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.15 2.39 6.29 -2.91 -0.02 2.37 16 32 H 0.14 2.67 6.28 -2.91 -0.02 2.66 16 33 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.00 7.66 -2.39 -0.02 0.98 16 36 H 0.09 2.30 7.42 -2.39 -0.02 2.28 16 37 H 0.05 1.10 6.53 -2.38 -0.02 1.08 16 38 H 0.05 1.41 7.18 -2.39 -0.02 1.39 16 39 H 0.08 2.58 5.54 -2.39 -0.01 2.56 16 40 H 0.01 0.36 6.62 -2.39 -0.02 0.34 16 41 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.03 1.52 7.52 -2.39 -0.02 1.51 16 43 H 0.03 1.44 7.29 -2.39 -0.02 1.42 16 44 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 45 H 0.01 0.44 6.78 -2.39 -0.02 0.43 16 46 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 47 H 0.09 2.49 8.07 -2.39 -0.02 2.47 16 48 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.41 7.57 8.19 -92.70 -0.76 6.81 16 50 H 0.40 8.00 5.04 -92.71 -0.47 7.53 16 Total: -1.00 -74.37 377.83 -2.75 -77.11 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.29 Total: 29.09 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 6.24 Total: -6.73 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -8.76 Total: -128.31 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -1.81 Total: -17.92 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.76 kcal Total: -74.37 -2.75 -77.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139273092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.125 kcal (2) G-P(sol) polarization free energy of solvation -74.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds