Wall clock time and date at job start Tue Mar 31 2020 18:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99827 * 2 1 4 4 C 1.50695 * 109.47395 * 270.00393 * 3 2 1 5 5 O 1.21284 * 120.00084 * 359.97438 * 4 3 2 6 6 N 1.34784 * 120.00067 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99734 * 179.97438 * 6 4 3 8 8 C 1.53010 * 109.46950 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.46904 * 179.97438 * 8 7 6 10 10 C 1.29458 * 117.69367 * 95.00454 * 9 8 7 11 11 C 1.50320 * 123.65602 * 181.13583 * 10 9 8 12 12 N 1.47115 * 109.10396 * 348.53877 * 11 10 9 13 13 C 1.36936 * 121.51016 * 223.16054 * 12 11 10 14 14 H 1.08000 * 120.00184 * 156.31047 * 13 12 11 15 15 C 1.38809 * 120.00164 * 336.30464 * 13 12 11 16 16 N 1.31619 * 119.99792 * 344.28579 * 15 13 12 17 17 Si 1.86798 * 120.00198 * 164.29147 * 15 13 12 18 18 H 1.48497 * 109.47521 * 94.57233 * 17 15 13 19 19 H 1.48499 * 109.47129 * 214.57944 * 17 15 13 20 20 H 1.48502 * 109.46919 * 334.57033 * 17 15 13 21 21 C 1.47343 * 117.11206 * 43.34374 * 12 11 10 22 22 C 1.49968 * 117.69700 * 274.97856 * 9 8 7 23 23 C 1.34773 * 120.00125 * 180.02562 * 2 1 3 24 24 O 1.21282 * 119.99675 * 179.97438 * 23 2 1 25 25 C 1.50691 * 119.99855 * 359.97438 * 23 2 1 26 26 C 1.53000 * 117.49795 * 248.62087 * 25 23 2 27 27 C 1.53004 * 60.00296 * 252.51031 * 26 25 23 28 28 H 1.08999 * 109.46975 * 89.99435 * 1 2 3 29 29 H 1.09000 * 109.46568 * 209.99841 * 1 2 3 30 30 H 1.08997 * 109.47149 * 329.99481 * 1 2 3 31 31 H 1.08997 * 109.47107 * 149.99900 * 3 2 1 32 32 H 1.09006 * 109.47066 * 30.00592 * 3 2 1 33 33 H 0.97001 * 120.00019 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.47114 * 60.00827 * 7 6 4 35 35 H 1.09002 * 109.47818 * 299.99862 * 7 6 4 36 36 H 1.09000 * 109.46517 * 60.00485 * 8 7 6 37 37 H 1.08993 * 109.46999 * 300.00593 * 8 7 6 38 38 H 1.08005 * 118.16972 * 0.85690 * 10 9 8 39 39 H 1.08992 * 109.52154 * 108.64475 * 11 10 9 40 40 H 1.08998 * 109.52435 * 228.83966 * 11 10 9 41 41 H 0.97006 * 119.99832 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.77544 * 178.42646 * 21 12 11 43 43 H 1.09000 * 109.77364 * 57.62619 * 21 12 11 44 44 H 1.09002 * 109.31403 * 281.29267 * 22 9 8 45 45 H 1.08995 * 109.31485 * 40.72303 * 22 9 8 46 46 H 1.08996 * 115.55309 * 34.32974 * 25 23 2 47 47 H 1.09002 * 117.50172 * 0.02562 * 26 25 23 48 48 H 1.09000 * 117.49948 * 145.02599 * 26 25 23 49 49 H 1.08994 * 117.49995 * 252.50923 * 27 26 25 50 50 H 1.08999 * 117.51900 * 107.47678 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 8 2.0549 1.0212 -2.3427 6 7 3.1107 2.8518 -1.6670 7 6 3.3552 3.2745 -3.0481 8 6 4.1190 4.6003 -3.0481 9 6 4.3711 5.0347 -4.4689 10 6 3.5293 5.8599 -5.0041 11 6 3.6374 6.3606 -6.4173 12 7 4.9548 5.9926 -6.9591 13 6 5.6988 6.8766 -7.6940 14 1 6.7704 6.7586 -7.7573 15 6 5.0756 7.9243 -8.3578 16 7 3.7729 7.9028 -8.5450 17 14 6.0857 9.3648 -8.9857 18 1 6.4461 9.1343 -10.4077 19 1 5.2903 10.6137 -8.8727 20 1 7.3237 9.4916 -8.1755 21 6 5.4384 4.6290 -6.6803 22 6 5.5798 4.4812 -5.1630 23 6 2.1389 -1.1672 -0.0005 24 8 3.3518 -1.1671 -0.0010 25 6 1.3855 -2.4722 -0.0005 26 6 1.4612 -3.3316 1.2630 27 6 2.2076 -3.7626 -0.0011 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.1499 1.1385 0.5138 32 1 1.6084 2.0284 0.5140 33 1 3.4252 3.3980 -0.9297 34 1 2.4030 3.4043 -3.5624 35 1 3.9450 2.5151 -3.5616 36 1 5.0713 4.4709 -2.5337 37 1 3.5290 5.3594 -2.5348 38 1 2.7008 6.2044 -4.4030 39 1 2.8516 5.9109 -7.0242 40 1 3.5320 7.4454 -6.4286 41 1 3.3375 8.6348 -9.0092 42 1 6.4062 4.4761 -7.1577 43 1 4.7214 3.8993 -7.0567 44 1 6.4660 5.0210 -4.8293 45 1 5.6880 3.4261 -4.9121 46 1 0.4469 -2.4732 -0.5547 47 1 2.0557 -2.9529 2.0945 48 1 0.5723 -3.8982 1.5404 49 1 1.8097 -4.6126 -0.5554 50 1 3.2935 -3.6675 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160279253.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:46 Heat of formation + Delta-G solvation = -3.392282 kcal Electronic energy + Delta-G solvation = -28243.580597 eV Core-core repulsion = 24272.812857 eV Total energy + Delta-G solvation = -3970.767740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.71542 -39.44318 -37.89343 -36.64891 -35.79575 -35.27344 -33.55989 -31.47421 -30.12961 -29.62445 -28.27854 -26.97255 -25.37291 -24.04151 -22.94825 -22.82566 -22.39401 -21.01248 -20.66124 -19.32645 -17.92271 -17.64752 -17.47121 -16.82462 -16.01775 -15.81639 -15.44944 -15.35484 -15.05769 -14.88768 -14.39598 -14.11260 -13.93695 -13.67729 -13.51258 -13.34966 -13.24656 -13.02126 -12.73767 -12.63734 -12.31110 -12.11444 -11.97541 -11.94791 -11.54387 -11.39420 -11.03821 -10.98382 -10.90525 -10.89943 -10.70404 -10.37339 -10.28717 -10.19999 -10.13568 -9.78973 -9.54107 -9.13696 -9.02283 -8.63409 -7.90192 -6.70591 -5.76783 -3.14859 2.08163 2.45142 2.49730 2.87946 3.23039 3.39043 3.45838 3.47903 3.48439 4.05846 4.36357 4.46723 4.51624 4.54742 4.60920 4.71304 4.78970 4.97217 5.07864 5.13000 5.15498 5.20812 5.29481 5.34060 5.37425 5.41938 5.52262 5.58063 5.66866 5.72882 5.81837 5.93300 6.02853 6.07295 6.17665 6.24367 6.36196 6.43247 6.58065 6.81995 6.91564 6.93518 7.25179 7.32290 7.36858 7.43523 7.77222 7.81579 7.90330 8.09700 8.41149 9.22638 9.85691 10.44782 11.33726 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031904 B = 0.001720 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.413180 B =16273.555355 C =16497.149114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.097 3.903 4 C 0.493 3.507 5 O -0.530 6.530 6 N -0.729 5.729 7 C 0.125 3.875 8 C -0.091 4.091 9 C -0.142 4.142 10 C -0.147 4.147 11 C 0.196 3.804 12 N -0.595 5.595 13 C -0.244 4.244 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.910 5.910 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.142 3.858 22 C -0.091 4.091 23 C 0.551 3.449 24 O -0.536 6.536 25 C -0.193 4.193 26 C -0.153 4.153 27 C -0.147 4.147 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.399 0.601 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.091 0.909 41 H 0.253 0.747 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 -17.048 23.883 30.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.330 5.330 3 C -0.030 4.030 4 C 0.277 3.723 5 O -0.406 6.406 6 N -0.382 5.382 7 C 0.002 3.998 8 C -0.129 4.129 9 C -0.143 4.143 10 C -0.166 4.166 11 C 0.071 3.929 12 N -0.319 5.319 13 C -0.373 4.373 14 H 0.086 0.914 15 C -0.200 4.200 16 N -0.555 5.555 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.016 3.984 22 C -0.130 4.130 23 C 0.340 3.660 24 O -0.413 6.413 25 C -0.214 4.214 26 C -0.190 4.190 27 C -0.184 4.184 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.233 0.767 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.144 0.856 47 H 0.117 0.883 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.203 -17.407 23.102 30.067 hybrid contribution 0.353 1.287 -0.100 1.339 sum -7.851 -16.120 23.001 29.164 Atomic orbital electron populations 1.21881 0.78545 1.03240 1.02668 1.47260 1.07286 1.04683 1.73775 1.21328 1.00301 0.86768 0.94636 1.21149 0.78132 0.80962 0.92023 1.90721 1.50459 1.53344 1.46067 1.46080 1.58457 1.23980 1.09646 1.21429 1.00480 0.96320 0.81536 1.20905 0.99844 0.95480 0.96650 1.20233 0.98699 1.01216 0.94145 1.23110 0.97029 0.96772 0.99706 1.19721 0.87024 1.00387 0.85768 1.44167 1.18893 1.08457 1.60336 1.19187 0.90028 1.05349 1.22758 0.91394 1.24981 0.95904 1.00622 0.98540 1.70025 1.08288 1.32200 1.45013 0.86246 0.79353 0.82373 0.78635 1.21520 1.21604 1.20516 1.20957 0.97825 0.87818 0.91813 1.20759 0.95562 0.98366 0.98362 1.19674 0.87225 0.84321 0.74797 1.90698 1.13941 1.87155 1.49480 1.22183 1.02930 0.90570 1.05719 1.22948 1.03283 1.01448 0.91324 1.22975 1.00188 0.95262 1.00011 0.91905 0.90434 0.90875 0.86876 0.87343 0.76726 0.91365 0.91353 0.91442 0.91539 0.89113 0.94447 0.89123 0.93679 0.92538 0.95885 0.91921 0.92883 0.85617 0.88274 0.87703 0.87765 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.05 59.85 0.60 1.06 16 2 N -0.60 -5.50 2.36 -182.96 -0.43 -5.93 16 3 C 0.10 0.81 5.93 -5.20 -0.03 0.78 16 4 C 0.49 6.04 7.90 -10.98 -0.09 5.95 16 5 O -0.53 -8.95 16.43 5.55 0.09 -8.86 16 6 N -0.73 -7.75 5.56 -60.29 -0.33 -8.08 16 7 C 0.13 1.67 5.66 -4.04 -0.02 1.65 16 8 C -0.09 -1.19 5.32 -27.88 -0.15 -1.34 16 9 C -0.14 -2.49 5.11 -100.99 -0.52 -3.01 16 10 C -0.15 -2.87 9.47 -35.78 -0.34 -3.21 16 11 C 0.20 4.78 5.25 -5.04 -0.03 4.76 16 12 N -0.60 -15.32 3.01 -173.59 -0.52 -15.84 16 13 C -0.24 -6.81 9.71 -15.06 -0.15 -6.95 16 14 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 15 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 16 N -0.91 -26.61 11.07 55.49 0.61 -26.00 16 17 Si 0.90 21.93 29.58 -169.99 -5.03 16.90 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C 0.14 3.09 6.57 -3.53 -0.02 3.07 16 22 C -0.09 -1.67 5.95 -28.18 -0.17 -1.83 16 23 C 0.55 6.21 7.46 -10.99 -0.08 6.13 16 24 O -0.54 -8.03 15.84 5.56 0.09 -7.94 16 25 C -0.19 -1.53 4.80 -91.77 -0.44 -1.97 16 26 C -0.15 -0.88 10.23 -26.73 -0.27 -1.15 16 27 C -0.15 -1.09 10.04 -26.72 -0.27 -1.36 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.30 6.64 -51.93 -0.34 -0.05 16 30 H 0.07 0.27 7.89 -51.93 -0.41 -0.14 16 31 H 0.11 0.94 7.42 -51.93 -0.39 0.56 16 32 H 0.11 0.50 7.89 -51.93 -0.41 0.09 16 33 H 0.40 2.87 8.47 -40.82 -0.35 2.52 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 37 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 38 H 0.09 1.56 7.73 -52.48 -0.41 1.16 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 2.44 6.39 -51.93 -0.33 2.11 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 46 H 0.13 0.79 7.26 -51.93 -0.38 0.41 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.11 0.99 7.67 -51.93 -0.40 0.60 16 LS Contribution 408.36 15.07 6.15 6.15 Total: -1.00 -36.45 408.36 -9.85 -46.30 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.42 Total: 0.91 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.06 Total: 2.40 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.68 Total: -55.85 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.18 Total: -16.81 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.45 -9.85 -46.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160279253.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.904 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds