Wall clock time and date at job start Tue Mar 31 2020 18:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00094 * 2 1 4 4 C 1.34777 * 119.99908 * 179.97438 * 2 1 3 5 5 O 1.21279 * 120.00049 * 0.02562 * 4 2 1 6 6 C 1.50702 * 119.99708 * 180.02562 * 4 2 1 7 7 H 1.09004 * 115.54925 * 295.67375 * 6 4 2 8 8 C 1.53072 * 117.53294 * 149.96611 * 6 4 2 9 9 C 1.53002 * 117.49868 * 81.34968 * 6 4 2 10 10 H 1.09003 * 117.49357 * 215.02157 * 9 6 4 11 11 C 1.50693 * 117.49949 * 0.02562 * 9 6 4 12 12 O 1.21285 * 119.99555 * 88.65411 * 11 9 6 13 13 N 1.34777 * 120.00497 * 268.64958 * 11 9 6 14 14 C 1.46497 * 119.99953 * 179.72704 * 13 11 9 15 15 C 1.53002 * 109.46759 * 180.27604 * 14 13 11 16 16 C 1.50704 * 109.46746 * 179.97438 * 15 14 13 17 17 C 1.29454 * 117.69554 * 94.74110 * 16 15 14 18 18 C 1.50309 * 123.65688 * 180.58309 * 17 16 15 19 19 N 1.47007 * 109.20451 * 349.50192 * 18 17 16 20 20 C 1.36938 * 121.37714 * 222.76532 * 19 18 17 21 21 H 1.07999 * 120.00369 * 152.98381 * 20 19 18 22 22 C 1.38813 * 119.99642 * 332.98163 * 20 19 18 23 23 N 1.31623 * 120.00060 * 157.48967 * 22 20 19 24 24 Si 1.86801 * 120.00222 * 337.48139 * 22 20 19 25 25 H 1.48504 * 109.46907 * 91.63530 * 24 22 20 26 26 H 1.48498 * 109.47393 * 211.63514 * 24 22 20 27 27 H 1.48497 * 109.46943 * 331.64034 * 24 22 20 28 28 C 1.47334 * 117.24879 * 42.73323 * 19 18 17 29 29 C 1.49973 * 117.69268 * 274.99623 * 16 15 14 30 30 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47448 * 300.00085 * 1 2 3 32 32 H 1.08996 * 109.46966 * 60.00495 * 1 2 3 33 33 H 1.08999 * 109.46653 * 270.00144 * 3 2 1 34 34 H 1.09009 * 109.47154 * 29.99645 * 3 2 1 35 35 H 1.08999 * 109.47339 * 149.99284 * 3 2 1 36 36 H 1.09000 * 117.49948 * 145.04391 * 8 6 4 37 37 H 1.09001 * 117.51076 * 0.02562 * 8 6 4 38 38 H 0.97002 * 119.99777 * 0.02562 * 13 11 9 39 39 H 1.09001 * 109.47293 * 300.27516 * 14 13 11 40 40 H 1.08995 * 109.47496 * 60.27818 * 14 13 11 41 41 H 1.08993 * 109.47234 * 299.99770 * 15 14 13 42 42 H 1.08996 * 109.47460 * 59.99965 * 15 14 13 43 43 H 1.08004 * 118.17060 * 0.86142 * 17 16 15 44 44 H 1.09004 * 109.67585 * 229.47910 * 18 17 16 45 45 H 1.09006 * 109.33536 * 109.31443 * 18 17 16 46 46 H 0.96999 * 119.99981 * 180.02562 * 23 22 20 47 47 H 1.09008 * 109.77936 * 178.62145 * 28 19 18 48 48 H 1.09007 * 109.77767 * 57.81420 * 28 19 18 49 49 H 1.09000 * 109.31464 * 281.29231 * 29 16 15 50 50 H 1.08991 * 109.31534 * 40.91312 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 0.0011 7 1 4.1163 -0.7413 -0.8852 8 6 4.3533 -2.3421 0.6810 9 6 4.3518 -0.9627 1.3431 10 1 5.2865 -0.4019 1.3397 11 6 3.4870 -0.7774 2.5631 12 8 3.1192 -1.7432 3.1980 13 7 3.1222 0.4614 2.9489 14 6 2.2765 0.6410 4.1315 15 6 2.0065 2.1320 4.3436 16 6 1.1360 2.3168 5.5598 17 6 1.7223 2.5599 6.6881 18 6 0.9866 2.7537 7.9844 19 7 -0.4527 2.8736 7.7104 20 6 -1.2235 3.8111 8.3445 21 1 -2.1147 4.1904 7.8667 22 6 -0.8595 4.2739 9.6016 23 7 -1.2961 5.4412 10.0251 24 14 0.2500 3.2401 10.6923 25 1 1.6669 3.6161 10.4550 26 1 -0.0938 3.4797 12.1169 27 1 0.0590 1.8028 10.3719 28 6 -1.0315 1.9440 6.7248 29 6 -0.3482 2.2002 5.3788 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 2.3791 1.5833 -1.0277 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 5.2888 -2.6887 0.2419 37 1 3.7286 -3.1156 1.1277 38 1 3.4162 1.2338 2.4409 39 1 1.3315 0.1178 3.9853 40 1 2.7846 0.2358 5.0065 41 1 2.9514 2.6552 4.4898 42 1 1.4984 2.5374 3.4686 43 1 2.7999 2.6317 6.6976 44 1 1.3407 3.6602 8.4754 45 1 1.1638 1.8948 8.6319 46 1 -1.0414 5.7647 10.9033 47 1 -2.1030 2.1224 6.6343 48 1 -0.8533 0.9155 7.0389 49 1 -0.7328 3.1254 4.9496 50 1 -0.5652 1.3722 4.7041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161225757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:06 Heat of formation + Delta-G solvation = 1.498933 kcal Electronic energy + Delta-G solvation = -29588.023428 eV Core-core repulsion = 25617.467787 eV Total energy + Delta-G solvation = -3970.555641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03031 -39.46199 -38.25893 -36.60608 -35.87771 -35.51593 -33.67808 -31.63694 -30.37609 -29.28575 -28.78190 -27.05179 -25.96202 -24.38348 -23.53523 -23.37183 -22.37359 -21.12079 -20.59197 -19.55630 -18.10902 -17.80533 -16.72931 -16.70632 -16.50198 -16.02538 -15.72165 -15.57336 -15.42180 -15.04740 -14.39186 -14.25912 -14.01158 -13.72619 -13.66774 -13.44167 -13.32749 -12.99260 -12.92280 -12.77695 -12.46166 -12.41331 -12.31632 -12.28671 -11.87267 -11.71542 -11.47157 -11.27482 -11.16264 -11.08686 -10.75068 -10.36175 -10.28810 -10.25908 -10.09563 -9.80898 -9.53578 -9.29002 -9.08973 -8.62755 -8.30732 -6.98950 -5.96941 -3.31092 2.04098 2.29950 2.49692 2.56359 2.88532 3.28282 3.32454 3.48619 3.52489 3.96847 4.16354 4.25818 4.43393 4.53265 4.61850 4.70036 4.86659 4.90430 4.92505 4.98282 5.03141 5.10450 5.15721 5.19263 5.23298 5.30290 5.37123 5.44708 5.54841 5.57988 5.71093 5.79059 5.86680 5.96312 5.99843 6.01573 6.15602 6.19758 6.23962 6.42067 6.51532 6.60406 6.77527 6.89293 7.06685 7.19920 7.43350 7.77068 7.92935 7.95335 8.31608 8.91310 9.70633 10.11451 11.19204 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.002465 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.912162 B =11355.616243 C =11960.314869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.078 3.922 4 C 0.538 3.462 5 O -0.526 6.526 6 C -0.167 4.167 7 H 0.139 0.861 8 C -0.112 4.112 9 C -0.174 4.174 10 H 0.138 0.862 11 C 0.534 3.466 12 O -0.524 6.524 13 N -0.724 5.724 14 C 0.125 3.875 15 C -0.092 4.092 16 C -0.124 4.124 17 C -0.148 4.148 18 C 0.151 3.849 19 N -0.606 5.606 20 C -0.256 4.256 21 H 0.086 0.914 22 C 0.024 3.976 23 N -0.906 5.906 24 Si 0.877 3.123 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.272 1.272 28 C 0.144 3.856 29 C -0.094 4.094 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.397 0.603 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.263 0.737 47 H 0.066 0.934 48 H 0.027 0.973 49 H 0.069 0.931 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.160 -7.999 -24.411 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.348 5.348 3 C -0.066 4.066 4 C 0.325 3.675 5 O -0.402 6.402 6 C -0.188 4.188 7 H 0.157 0.843 8 C -0.150 4.150 9 C -0.196 4.196 10 H 0.156 0.844 11 C 0.319 3.681 12 O -0.399 6.399 13 N -0.377 5.377 14 C 0.002 3.998 15 C -0.130 4.130 16 C -0.125 4.125 17 C -0.168 4.168 18 C 0.026 3.974 19 N -0.330 5.330 20 C -0.384 4.384 21 H 0.103 0.897 22 C -0.175 4.175 23 N -0.549 5.549 24 Si 0.707 3.293 25 H -0.215 1.215 26 H -0.230 1.230 27 H -0.197 1.197 28 C 0.018 3.982 29 C -0.133 4.133 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.232 0.768 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.088 0.912 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.487 -9.121 -23.774 28.360 hybrid contribution 0.981 0.263 0.451 1.111 sum 13.468 -8.858 -23.323 28.351 Atomic orbital electron populations 1.21729 0.78622 1.04406 1.01586 1.47580 1.07305 1.06107 1.73844 1.21854 0.97187 0.85432 1.02097 1.19658 0.88374 0.83480 0.75942 1.90724 1.69593 1.31085 1.48750 1.22304 0.92331 1.07293 0.96919 0.84310 1.23048 1.02131 0.90811 0.98963 1.22415 1.01210 1.04885 0.91042 0.84385 1.19567 0.80258 0.83257 0.85043 1.90762 1.54508 1.39611 1.55031 1.46077 1.53116 1.07815 1.30657 1.21431 0.94628 0.96722 0.87047 1.20913 0.99562 0.94361 0.98124 1.20296 0.95380 1.03307 0.93487 1.22650 0.98868 0.99303 0.95977 1.20212 0.84603 0.99746 0.92839 1.44427 1.02553 1.38205 1.47828 1.18862 1.08285 1.13537 0.97733 0.89661 1.25267 0.98400 0.96798 0.96993 1.69861 1.47846 1.17093 1.20123 0.87011 0.80035 0.82073 0.80171 1.21458 1.22950 1.19687 1.21013 0.96834 0.92411 0.87898 1.20781 0.92084 1.00818 0.99631 0.89515 0.91765 0.92065 0.92191 0.90443 0.91292 0.86661 0.86488 0.76838 0.91263 0.91216 0.91239 0.91191 0.88450 0.90227 0.94852 0.92758 0.91540 0.95475 0.91242 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.69 59.85 0.64 1.28 16 2 N -0.61 -5.05 3.27 -189.51 -0.62 -5.68 16 3 C 0.08 0.35 10.06 59.85 0.60 0.95 16 4 C 0.54 5.77 6.35 -10.98 -0.07 5.70 16 5 O -0.53 -7.99 16.00 5.56 0.09 -7.90 16 6 C -0.17 -1.19 4.64 -91.73 -0.43 -1.61 16 7 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 8 C -0.11 -0.88 9.56 -26.69 -0.26 -1.14 16 9 C -0.17 -1.25 5.31 -91.77 -0.49 -1.73 16 10 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 11 C 0.53 5.97 6.48 -10.99 -0.07 5.90 16 12 O -0.52 -8.55 16.45 5.55 0.09 -8.45 16 13 N -0.72 -6.49 5.20 -60.30 -0.31 -6.80 16 14 C 0.12 1.42 5.66 -4.04 -0.02 1.40 16 15 C -0.09 -1.00 5.32 -27.88 -0.15 -1.15 16 16 C -0.12 -1.91 5.11 -100.99 -0.52 -2.42 16 17 C -0.15 -2.60 9.47 -35.79 -0.34 -2.93 16 18 C 0.15 3.32 4.43 -5.11 -0.02 3.29 16 19 N -0.61 -14.52 2.76 -173.67 -0.48 -15.00 16 20 C -0.26 -7.17 10.09 -15.06 -0.15 -7.32 16 21 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 22 C 0.02 0.71 5.20 -17.43 -0.09 0.62 16 23 N -0.91 -27.73 13.97 55.49 0.78 -26.95 16 24 Si 0.88 22.36 24.30 -169.99 -4.13 18.23 16 25 H -0.29 -7.01 6.70 56.52 0.38 -6.63 16 26 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.27 -6.88 6.70 56.52 0.38 -6.50 16 28 C 0.14 2.85 6.58 -3.53 -0.02 2.83 16 29 C -0.09 -1.52 5.95 -28.18 -0.17 -1.69 16 30 H 0.09 0.89 6.90 -51.93 -0.36 0.53 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.29 8.07 -51.92 -0.42 -0.12 16 35 H 0.07 0.23 4.29 -51.93 -0.22 0.01 16 36 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.12 1.32 7.65 -51.93 -0.40 0.93 16 38 H 0.40 2.26 6.84 -40.82 -0.28 1.98 16 39 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 42 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 43 H 0.10 1.46 7.74 -52.48 -0.41 1.05 16 44 H 0.08 1.89 5.60 -51.93 -0.29 1.60 16 45 H 0.03 0.76 6.42 -51.93 -0.33 0.42 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.07 1.29 7.96 -51.92 -0.41 0.88 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 LS Contribution 396.54 15.07 5.98 5.98 Total: -1.00 -37.31 396.54 -8.36 -45.67 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.19 Total: -1.06 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.55 Total: 1.96 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.64 Total: -54.43 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.18 Total: -16.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.13 Total: 18.23 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.31 -8.36 -45.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161225757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.166 kcal (2) G-P(sol) polarization free energy of solvation -37.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds